Commit Graph

81 Commits

Author SHA1 Message Date
Iaroslav Postovalov
d7a4228f5f Add out variance to StructureND and some related types, make some unrelated changes 2021-05-20 19:57:55 +07:00
97c4b81717 Introduce PerformancePitfall annotation 2021-05-13 11:02:20 +03:00
Iaroslav Postovalov
e9c31b7827
Merge branch 'master' into dev
# Conflicts:
#	README.md
#	build.gradle.kts
#	examples/src/main/kotlin/space/kscience/kmath/stat/DistributionBenchmark.kt
#	examples/src/main/kotlin/space/kscience/kmath/structures/ParallelRealNDField.kt
#	kmath-ast/README.md
#	kmath-ast/build.gradle.kts
#	kmath-ast/src/commonMain/kotlin/space/kscience/kmath/ast/MstExpression.kt
#	kmath-complex/README.md
#	kmath-complex/build.gradle.kts
#	kmath-complex/src/commonMain/kotlin/space/kscience/kmath/complex/ComplexNDField.kt
#	kmath-core/README.md
#	kmath-core/build.gradle.kts
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/expressions/MST.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/expressions/MstAlgebra.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/nd/RealNDField.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/structures/RealBufferField.kt
#	kmath-coroutines/build.gradle.kts
#	kmath-coroutines/src/commonMain/kotlin/space/kscience/kmath/chains/BlockingRealChain.kt
#	kmath-coroutines/src/jvmMain/kotlin/space/kscience/kmath/structures/LazyNDStructure.kt
#	kmath-dimensions/src/commonTest/kotlin/kscience/dimensions/DMatrixContextTest.kt
#	kmath-for-real/README.md
#	kmath-functions/README.md
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/interpolation/Interpolator.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/interpolation/LoessInterpolator.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/interpolation/XYPointSet.kt
#	kmath-geometry/build.gradle.kts
#	kmath-nd4j/README.md
#	kmath-nd4j/build.gradle.kts
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/distributions/FactorizedDistribution.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Distribution.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Fitting.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/OptimizationProblem.kt
#	kmath-stat/src/jvmMain/kotlin/space/kscience/kmath/stat/distributions.kt
#	kmath-viktor/src/main/kotlin/space/kscience/kmath/viktor/ViktorNDStructure.kt
2021-04-16 18:02:44 +07:00
Iaroslav Postovalov
41b7349a43
Setup copyright headers, add references to third-party files, update LICENSE 2021-04-16 00:15:00 +07:00
e2ceb64d36 Fix errors and migrations 2021-04-14 23:26:21 +03:00
c2bab5d138 Fix Samplers and distribution API 2021-04-01 18:18:54 +03:00
Iaroslav Postovalov
9574099f9b
Fix post-merge issues 2021-03-31 02:24:21 +07:00
Iaroslav Postovalov
f26cad6d18
Merge branch 'dev' into feature/mp-samplers
# Conflicts:
#	examples/src/main/kotlin/space/kscience/kmath/commons/fit/fitWithAutoDiff.kt
#	examples/src/main/kotlin/space/kscience/kmath/stat/DistributionBenchmark.kt
#	examples/src/main/kotlin/space/kscience/kmath/stat/DistributionDemo.kt
#	kmath-commons/src/test/kotlin/space/kscience/kmath/commons/optimization/OptimizeTest.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/structures/Buffer.kt
#	kmath-coroutines/src/commonMain/kotlin/kscience/kmath/chains/BlockingRealChain.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/SamplerAlgebra.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Distribution.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/RandomChain.kt
#	kmath-stat/src/jvmMain/kotlin/space/kscience/kmath/stat/distributions.kt
2021-03-31 01:48:26 +07:00
e216fd50f5 Merge remote-tracking branch 'origin/dev' into dev
# Conflicts:
#	build.gradle.kts
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/misc/XYPointSet.kt
#	kmath-ejml/src/main/kotlin/space/kscience/kmath/ejml/EjmlLinearSpace.kt
2021-03-24 13:33:08 +03:00
88d0c19a74 Refactor structure features. Basic curve fitting 2021-03-19 11:07:27 +03:00
Iaroslav Postovalov
c4367ac509
Merge branch 'dev' into commandertvis/issue226
# Conflicts:
#	kmath-histograms/src/commonMain/kotlin/space/kscience/kmath/histogram/Counter.kt
2021-03-17 23:57:50 +07:00
a3ca06a241 Remove StructureND identity #248 2021-03-16 21:43:29 +03:00
206e4cbcf6 Real -> Double 2021-03-16 21:17:26 +03:00
05f742452d Structure naming change 2021-03-16 20:56:20 +03:00
Iaroslav Postovalov
993bba3133
Fix #226 2021-03-12 19:03:56 +07:00
522f39cef3 replace Space by Group 2021-03-10 22:09:19 +03:00
8ae8ebe871 Fully refactor algebra split ScaleOperations from Space. 2021-03-08 21:03:48 +03:00
6581f3dd8a Cleanup 2021-02-19 13:38:32 +03:00
8485d28872 Change package name to space.kscience 2021-02-18 11:17:28 +03:00
Iaroslav Postovalov
9210bc9198
Merge branch 'dev' into feature/mp-samplers 2021-02-06 23:12:16 +07:00
Iaroslav Postovalov
624460c52d
Merge branch 'dev' into feature/mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/stat/DistributionBenchmark.kt
#	kmath-core/src/commonMain/kotlin/kscience/kmath/structures/Structure2D.kt
2021-01-24 01:55:32 +07:00
332c04b573 [WIP] Refactor NDStructures 2021-01-23 19:19:13 +03:00
061398b009 [WIP] Refactor NDStructures 2021-01-22 23:22:24 +03:00
1c7bd05c58 Add proper equality check for EJML matrices 2021-01-19 22:48:43 +03:00
Iaroslav Postovalov
5c54640e60
Merge branch 'dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/stat/DistributionDemo.kt
#	kmath-stat/src/jvmMain/kotlin/kscience/kmath/stat/distributions.kt
2020-12-12 17:11:09 +07:00
5b653f10d7 kmath-for-real refactoring 2020-11-29 13:32:20 +03:00
Iaroslav Postovalov
612f6f0082
Refactor, remove unused files, remove BasicSampler 2020-10-16 16:49:47 +07:00
Iaroslav Postovalov
26d81bddb5
Merge remote-tracking branch 'origin/dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionBenchmark.kt
2020-10-02 01:35:55 +07:00
Iaroslav Postovalov
53ebec2e01
Perform 1.4 and explicit API migrations, refactor blocking chain, make tests work 2020-09-27 15:16:12 +07:00
Iaroslav Postovalov
e35a364aa8
Merge remote-tracking branch 'origin/dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionBenchmark.kt
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionDemo.kt
#	kmath-coroutines/src/commonMain/kotlin/kscience/kmath/chains/Chain.kt
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/BlockingIntChain.kt
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/BlockingRealChain.kt
#	kmath-prob/build.gradle.kts
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/Distribution.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/AhrensDieterExponentialSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/AhrensDieterMarsagliaTsangGammaSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/AliasMethodDiscreteSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/BoxMullerNormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/GaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/InternalGamma.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/InternalUtils.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/KempSmallMeanPoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/LargeMeanPoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/MarsagliaNormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/NormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/PoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/SmallMeanPoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/ZigguratNormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/FactorizedDistribution.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/RandomChain.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/RandomGenerator.kt
#	kmath-prob/src/jvmMain/kotlin/kscience/kmath/prob/distributions.kt
#	kmath-prob/src/jvmMain/kotlin/scientifik/kmath/prob/RandomSourceGenerator.kt
2020-09-27 14:54:20 +07:00
Iaroslav
12b599fff2
Fix some packaging issues, add some KDoc comments, minor refactor 2020-09-23 21:15:54 +07:00
28190f9800 scientifik -> kscience 2020-09-20 22:39:27 +03:00
Iaroslav Postovalov
b5fa1ed6e8
Merge remote-tracking branch 'origin/dev' into mp-samplers
# Conflicts:
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/BlockingIntChain.kt
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/BlockingRealChain.kt
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/Chain.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/RandomChain.kt
2020-09-10 23:42:33 +07:00
Iaroslav Postovalov
fc5ec8fed7
Drop koma support, add more explicit visibility modifiers 2020-09-09 22:31:54 +07:00
Iaroslav Postovalov
8ae9a071ef
Add more explicit public modifiers 2020-09-09 21:12:18 +07:00
Iaroslav Postovalov
f567f73d19
Specify explicit API visbility, minor refactoring (error handling, etc.) 2020-09-09 11:28:54 +07:00
Iaroslav Postovalov
6b79e79d21
Update tools and Kotlin, specify public explicitly, minor contracts refactor 2020-09-09 09:55:26 +07:00
Iaroslav
5e4522bb06
Upgrade build tools plugin to dev version; file reformat; change dependencies' versions; specify visibility explicitly at certain places (core, especially), make some interfaces fun 2020-09-08 16:40:47 +07:00
Iaroslav Postovalov
40888f66d6
Replace opt-in annotations with useExperimentalAnnotation for modules 2020-08-22 16:49:21 +07:00
Iaroslav
1d18832aa6
Provide contracts for many functions, make inline several functions, replace <algebra>.run { and with(<algebra>> { with <algebra> {, add newlines at EOFs, specify operator modifier explicitly at many places, reformat files, replace if (...) error guards with require and check 2020-08-22 02:42:59 +07:00
Iaroslav
6114099e68
Edit doc files, update readmes, document coroutines API 2020-08-08 15:51:04 +07:00
Iaroslav
cb5234a334
Document AST and expressions API, implement ExtendedField over MST and Expression<T> 2020-08-08 04:57:20 +07:00
Iaroslav
551d4991fb
Merge remote-tracking branch 'origin/dev' into mp-samplers 2020-06-27 20:47:57 +07:00
4b067f7a97 DoubleBuffer -> RealBuffer. Number algebra refactoring. 2020-06-27 12:19:43 +03:00
Iaroslav
a03c82f758
Simplify BlockingIntChain and BlockingRealChain; add blocking extension function for RandomChain; copy general documentation to samplers created with Apache Commons RNG 2020-06-12 02:49:06 +07:00
Iaroslav
28062cb096
Minimal refactor of existing random API, move samplers implementations to samplers package, implement Sampler<T> by all the Samplers 2020-06-08 17:16:57 +07:00
8533a31677 Optimized blocking chains for primitive numbers generation. 2020-05-23 10:45:02 +03:00
048a1ceaed Moved probability distributions to commons-rng and to prob module 2020-05-22 21:24:20 +03:00
646207e140 Equlity half-fix for NDStructure 2020-05-06 10:50:08 +03:00
2e057c409b RealHistogram counts weights 2020-04-30 11:20:28 +03:00