Commit Graph

144 Commits

Author SHA1 Message Date
9a1f8a2266 remove unnecessary toInt 2021-11-10 11:51:20 +03:00
fa9ff4c978 Minor refactoring 2021-11-09 17:56:53 +03:00
d62bc66d4a Refactoring 2021-11-09 13:42:22 +03:00
f6b576071d Add non-boxing BufferView access 2021-11-09 12:25:17 +03:00
1315a8cd34 views cleanup 2021-11-08 19:57:22 +03:00
a1351aa942 Buffer views 2021-11-08 17:50:49 +03:00
bf504ae6c5 Basic series 2021-11-05 16:58:13 +03:00
688382eed6 Shapeless ND and Buffer algebras 2021-10-17 12:42:35 +03:00
d9f36365d9 Fix Mean bug 2021-10-04 22:31:06 +03:00
fd8a61c852 Fix Mean bug 2021-10-04 12:40:30 +03:00
abae29bbed DoubleBuffer algebra refactoring 2021-10-02 18:54:45 +03:00
64781a6785 Move Minuit tmp classes to optimization 2021-09-23 21:44:18 +03:00
Alexander Nozik
6dc9e8847a
Merge pull request #404 from mipt-npm/feature/advanced-optimization
Feature/advanced optimization
2021-08-29 11:44:09 +03:00
Iaroslav Postovalov
0b90dd4df2 Fix #408 2021-08-19 12:44:33 +03:00
dfd6e0a949 Merge remote-tracking branch 'origin/dev' into feature/advanced-optimization
# Conflicts:
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/optimization/CMOptimization.kt
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/optimization/cmFit.kt
#	kmath-ejml/src/main/kotlin/space/kscience/kmath/ejml/_generated.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/FunctionOptimization.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/NoDerivFunctionOptimization.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/Optimization.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/XYFit.kt
2021-08-16 09:56:00 +03:00
aaa298616d QOW is working more or less 2021-08-16 09:55:03 +03:00
Iaroslav Postovalov
da27c2e494 Fix path to LICENSE in the notice 2021-08-08 12:27:16 +07:00
a020d1545c merge dev 2021-08-06 12:23:24 +03:00
Iaroslav Postovalov
afd5908784 Revise grammar of KDoc comments, refresh documentation files 2021-07-29 07:16:26 +07:00
Iaroslav Postovalov
8b3298f7a8 Exact conversions from Long to Int, Int indexing of Dimension 2021-07-20 11:21:47 -07:00
Iaroslav Postovalov
b1998ed1a9 Replace public override with override 2021-07-19 03:12:41 +07:00
Iaroslav Postovalov
ef41c3f168 Build infrastructure changes 2021-07-17 16:40:34 +07:00
Iaroslav Postovalov
5d2eaaf68a Add contracts to some functions, fix multiple style issues 2021-07-13 00:38:30 +07:00
95c0b2d3f0 [WIP] optimization with QOW 2021-06-08 14:27:45 +03:00
c8621ee5b7 [WIP] optimization refactoring 2021-05-25 21:11:57 +03:00
f84f7f8e45 Merge branch 'dev' into feature/advanced-optimization
# Conflicts:
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/optimization/CMOptimization.kt
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/optimization/cmFit.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/expressions/DifferentiableExpression.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/FunctionOptimization.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/XYFit.kt
2021-05-25 17:00:02 +03:00
f2b7a08ad8 Remove second generic from DifferentiableExpression 2021-05-25 16:53:53 +03:00
c240fa4a9e [WIP] optimization refactoring 2021-05-25 16:42:23 +03:00
88e94a7fd9 [WIP] Optimization 2021-05-24 17:02:12 +03:00
3ec674c61b Merge branch 'dev' into feature/advanced-optimization
# Conflicts:
#	examples/src/main/kotlin/space/kscience/kmath/functions/integrate.kt
#	examples/src/main/kotlin/space/kscience/kmath/functions/matrixIntegration.kt
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/integration/CMGaussRuleIntegrator.kt
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/integration/CMIntegrator.kt
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/optimization/CMOptimization.kt
#	kmath-commons/src/main/kotlin/space/kscience/kmath/commons/optimization/cmFit.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/integration/GaussIntegrator.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/integration/Integrand.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/integration/MultivariateIntegrand.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/integration/UnivariateIntegrand.kt
#	kmath-functions/src/commonTest/kotlin/space/kscience/kmath/integration/GaussIntegralTest.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/FunctionOptimization.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/NoDerivFunctionOptimization.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/optimization/Optimization.kt
2021-05-24 14:44:08 +03:00
15d874fb06 Remove MST.Symbolic
Replace it by Symbol
LogicAlgebra
2021-05-16 19:53:21 +03:00
7ce0829597 0.3.0-dev-8. Cleanup 2021-05-08 14:20:16 +03:00
7b6361e59d [WIP] optimization refactor in process 2021-04-26 15:02:19 +03:00
257337f4fb [WIP] Refactor optimization 2021-04-25 22:34:59 +03:00
Iaroslav Postovalov
0a0d0af94a
Configure copyright scoping 2021-04-21 19:46:02 +07:00
Iaroslav Postovalov
b6a57dbfd0
MST compilation to WebAssembly with Binaryen, reorganize internal JS bindings, tests refactor 2021-04-21 19:17:57 +07:00
Iaroslav Postovalov
e9c31b7827
Merge branch 'master' into dev
# Conflicts:
#	README.md
#	build.gradle.kts
#	examples/src/main/kotlin/space/kscience/kmath/stat/DistributionBenchmark.kt
#	examples/src/main/kotlin/space/kscience/kmath/structures/ParallelRealNDField.kt
#	kmath-ast/README.md
#	kmath-ast/build.gradle.kts
#	kmath-ast/src/commonMain/kotlin/space/kscience/kmath/ast/MstExpression.kt
#	kmath-complex/README.md
#	kmath-complex/build.gradle.kts
#	kmath-complex/src/commonMain/kotlin/space/kscience/kmath/complex/ComplexNDField.kt
#	kmath-core/README.md
#	kmath-core/build.gradle.kts
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/expressions/MST.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/expressions/MstAlgebra.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/nd/RealNDField.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/structures/RealBufferField.kt
#	kmath-coroutines/build.gradle.kts
#	kmath-coroutines/src/commonMain/kotlin/space/kscience/kmath/chains/BlockingRealChain.kt
#	kmath-coroutines/src/jvmMain/kotlin/space/kscience/kmath/structures/LazyNDStructure.kt
#	kmath-dimensions/src/commonTest/kotlin/kscience/dimensions/DMatrixContextTest.kt
#	kmath-for-real/README.md
#	kmath-functions/README.md
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/interpolation/Interpolator.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/interpolation/LoessInterpolator.kt
#	kmath-functions/src/commonMain/kotlin/space/kscience/kmath/interpolation/XYPointSet.kt
#	kmath-geometry/build.gradle.kts
#	kmath-nd4j/README.md
#	kmath-nd4j/build.gradle.kts
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/distributions/FactorizedDistribution.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Distribution.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Fitting.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/OptimizationProblem.kt
#	kmath-stat/src/jvmMain/kotlin/space/kscience/kmath/stat/distributions.kt
#	kmath-viktor/src/main/kotlin/space/kscience/kmath/viktor/ViktorNDStructure.kt
2021-04-16 18:02:44 +07:00
ba3c9b6d45 BigIntBenchmarks. cleanup 2021-04-16 09:47:30 +03:00
Iaroslav Postovalov
41b7349a43
Setup copyright headers, add references to third-party files, update LICENSE 2021-04-16 00:15:00 +07:00
e2ceb64d36 Fix errors and migrations 2021-04-14 23:26:21 +03:00
6cea5742e8 Blocking statistics. Move MST to core 2021-04-14 12:40:26 +03:00
000c79d42f Simplify test 2021-04-10 17:15:15 +03:00
4abd0bdb6f Migrate to gradle 7.0 and suspend-inline bug 2021-04-10 16:31:08 +03:00
31460df721 GaussianSampler inherits Blocking Sampler 2021-04-07 14:14:22 +03:00
Iaroslav Postovalov
cf91da1a98
Add pi and e constants, some unrelated changes 2021-04-05 23:44:42 +07:00
c2bab5d138 Fix Samplers and distribution API 2021-04-01 18:18:54 +03:00
Iaroslav Postovalov
9574099f9b
Fix post-merge issues 2021-03-31 02:24:21 +07:00
Iaroslav Postovalov
f26cad6d18
Merge branch 'dev' into feature/mp-samplers
# Conflicts:
#	examples/src/main/kotlin/space/kscience/kmath/commons/fit/fitWithAutoDiff.kt
#	examples/src/main/kotlin/space/kscience/kmath/stat/DistributionBenchmark.kt
#	examples/src/main/kotlin/space/kscience/kmath/stat/DistributionDemo.kt
#	kmath-commons/src/test/kotlin/space/kscience/kmath/commons/optimization/OptimizeTest.kt
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/structures/Buffer.kt
#	kmath-coroutines/src/commonMain/kotlin/kscience/kmath/chains/BlockingRealChain.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/SamplerAlgebra.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Distribution.kt
#	kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/RandomChain.kt
#	kmath-stat/src/jvmMain/kotlin/space/kscience/kmath/stat/distributions.kt
2021-03-31 01:48:26 +07:00
cd05ca6e95 Initial Optimization API 2021-03-24 16:36:06 +03:00
e216fd50f5 Merge remote-tracking branch 'origin/dev' into dev
# Conflicts:
#	build.gradle.kts
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/misc/XYPointSet.kt
#	kmath-ejml/src/main/kotlin/space/kscience/kmath/ejml/EjmlLinearSpace.kt
2021-03-24 13:33:08 +03:00
aeceb4a337 Move dataset to core 2021-03-19 14:53:14 +03:00
88d0c19a74 Refactor structure features. Basic curve fitting 2021-03-19 11:07:27 +03:00
Iaroslav Postovalov
c4367ac509
Merge branch 'dev' into commandertvis/issue226
# Conflicts:
#	kmath-histograms/src/commonMain/kotlin/space/kscience/kmath/histogram/Counter.kt
2021-03-17 23:57:50 +07:00
206e4cbcf6 Real -> Double 2021-03-16 21:17:26 +03:00
05f742452d Structure naming change 2021-03-16 20:56:20 +03:00
0e0deaeb72 Refactor buffer factories 2021-03-15 14:26:17 +03:00
Iaroslav Postovalov
993bba3133
Fix #226 2021-03-12 19:03:56 +07:00
522f39cef3 replace Space by Group 2021-03-10 22:09:19 +03:00
8ae8ebe871 Fully refactor algebra split ScaleOperations from Space. 2021-03-08 21:03:48 +03:00
dd5ef4810f Gradle plugin 0.8.0 2021-02-21 16:13:40 +03:00
1ad305ba34 Merge remote-tracking branch 'origin/dev' into dev
# Conflicts:
#	kmath-core/api/kmath-core.api
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/linear/MatrixContext.kt
2021-02-19 13:50:49 +03:00
8485d28872 Change package name to space.kscience 2021-02-18 11:17:28 +03:00
Iaroslav Postovalov
d69a04bb6e
Merge branch 'dev' into feature/mp-samplers 2021-02-12 20:58:03 +07:00
Iaroslav Postovalov
228b55f5ea
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	CHANGELOG.md
#	gradle.properties
#	kmath-core/src/commonMain/kotlin/kscience/kmath/linear/MatrixContext.kt
#	kmath-stat/build.gradle.kts
2021-02-11 17:28:22 +07:00
Iaroslav Postovalov
39f2c6c3f4
Merge branch 'dev' into feature/mp-samplers 2021-02-07 02:58:10 +07:00
Iaroslav Postovalov
a5cdf7c297
Merge branch 'dev' into gsl-experiment 2021-02-07 02:46:24 +07:00
Iaroslav Postovalov
73969da969
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
#	kmath-complex/src/commonMain/kotlin/kscience/kmath/complex/Complex.kt
2021-02-07 02:31:54 +07:00
Iaroslav Postovalov
9210bc9198
Merge branch 'dev' into feature/mp-samplers 2021-02-06 23:12:16 +07:00
86263f602a Remove inline from Random-based RandomGenerator.kt to work around https://youtrack.jetbrains.com/issue/KT-44703 2021-02-04 13:24:54 +03:00
Iaroslav Postovalov
55f8c3938b
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	.github/workflows/build.yml
2021-01-31 14:57:31 +07:00
Iaroslav Postovalov
46650a414e
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
#	README.md
#	kmath-core/README.md
2021-01-31 14:46:11 +07:00
28240954b0 Documentation update. API generated 2021-01-30 20:23:15 +03:00
Iaroslav Postovalov
9342824c96
Merge branch 'dev' into feature/quaternion 2021-01-24 02:00:22 +07:00
Iaroslav Postovalov
624460c52d
Merge branch 'dev' into feature/mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/stat/DistributionBenchmark.kt
#	kmath-core/src/commonMain/kotlin/kscience/kmath/structures/Structure2D.kt
2021-01-24 01:55:32 +07:00
Iaroslav Postovalov
904a0f3525
Merge branch 'dev' into gsl-experiment 2021-01-24 01:49:43 +07:00
d10ae66e58 Deploy fixes for 0.2.0-dev-5 2021-01-20 17:08:29 +03:00
Iaroslav Postovalov
7a571089a8
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
2020-12-06 04:07:11 +07:00
Iaroslav Postovalov
96957dfa4b
Add missing experimental annotation 2020-12-02 10:49:47 +07:00
Iaroslav Postovalov
0db33cca55
Merge branch 'dev' into gsl-experiment 2020-11-30 00:56:35 +07:00
Iaroslav Postovalov
5a3fccb455
Add reference to Commons Math implementation of InternalErf, fix markdown issues, rename prob package in examples to stat 2020-11-29 22:02:06 +07:00
5b653f10d7 kmath-for-real refactoring 2020-11-29 13:32:20 +03:00
Iaroslav Postovalov
12758d589e
Merge branch 'dev' into mp-samplers 2020-11-29 16:25:25 +07:00
Iaroslav Postovalov
f18cd9ad40
Fix package names 2020-11-29 16:25:08 +07:00
Iaroslav Postovalov
e5d5ac17da
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	build.gradle.kts
#	examples/build.gradle.kts
#	examples/src/main/kotlin/kscience/kmath/ast/ExpressionsInterpretersBenchmark.kt
#	settings.gradle.kts
2020-11-29 01:17:16 +07:00
Iaroslav Postovalov
863b22a451
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
2020-11-29 01:14:08 +07:00
af306084cf Test for #65 2020-11-22 19:16:08 +03:00
1538bc0e69 Merge remote-tracking branch 'origin/dev' into dev 2020-11-22 19:06:50 +03:00
434229a43a Implementation for #65 2020-11-22 19:06:38 +03:00
Iaroslav Postovalov
1539113e72
Make complex and quaternion NaN-hostile 2020-11-10 19:01:26 +07:00
Iaroslav Postovalov
3c602e859d
Merge branch 'dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionBenchmark.kt
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionDemo.kt
#	kmath-commons/src/main/kotlin/kscience/kmath/commons/expressions/DiffExpression.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/distributions/NormalDistribution.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/internal/InternalErf.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/internal/InternalGamma.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/internal/InternalUtils.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/AhrensDieterExponentialSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/AhrensDieterMarsagliaTsangGammaSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/AliasMethodDiscreteSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/BoxMullerNormalizedGaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/GaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/KempSmallMeanPoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/LargeMeanPoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/MarsagliaNormalizedGaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/NormalizedGaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/PoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/SmallMeanPoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/ZigguratNormalizedGaussianSampler.kt
#	kmath-stat/src/jvmMain/kotlin/kscience/kmath/stat/distributions.kt
2020-11-02 01:16:29 +07:00
Iaroslav Postovalov
33d23c8d28
Duplicate repositories declared in main build script, fix errors 2020-11-02 01:08:55 +07:00
Iaroslav Postovalov
1e1819ac78
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	build.gradle.kts
#	settings.gradle.kts
2020-10-29 15:47:09 +07:00
Iaroslav Postovalov
2b7803290f
Merge branch 'dev' into kotlingrad
# Conflicts:
#	settings.gradle.kts
2020-10-28 18:37:21 +07:00
dfa1bcaf01 prob renamed to stat 2020-10-28 09:16:21 +03:00