Move annotations to base package. Fix series

This commit is contained in:
Alexander Nozik 2023-04-07 19:55:34 +03:00
parent 96554d2b0c
commit ce388fed44
190 changed files with 485 additions and 350 deletions

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@ -58,6 +58,7 @@
### Changed
- Annotations moved to `space.kscience.kmath`
- Exponential operations merged with hyperbolic functions
- Space is replaced by Group. Space is reserved for vector spaces.
- VectorSpace is now a vector space

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@ -214,28 +214,6 @@ One can still use generic algebras though.
>
> **Maturity**: EXPERIMENTAL
### [kmath-polynomial](kmath-polynomial)
>
>
> **Maturity**: PROTOTYPE
>
> **Features:**
> - [polynomial abstraction](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/Polynomial.kt) : Abstraction for polynomial spaces.
> - [rational function abstraction](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/RationalFunction.kt) : Abstraction for rational functions spaces.
> - ["list" polynomials](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/ListRationalFunction.kt) : List implementation of univariate polynomials.
> - ["list" rational functions](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/ListPolynomial.kt) : List implementation of univariate rational functions.
> - ["list" polynomials and rational functions constructors](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/listConstructors.kt) : Constructors for list polynomials and rational functions.
> - ["list" polynomials and rational functions utilities](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/listUtil.kt) : Utilities for list polynomials and rational functions.
> - ["numbered" polynomials](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/NumberedRationalFunction.kt) : Numbered implementation of multivariate polynomials.
> - ["numbered" rational functions](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/NumberedPolynomial.kt) : Numbered implementation of multivariate rational functions.
> - ["numbered" polynomials and rational functions constructors](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/numberedConstructors.kt) : Constructors for numbered polynomials and rational functions.
> - ["numbered" polynomials and rational functions utilities](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/numberedUtil.kt) : Utilities for numbered polynomials and rational functions.
> - ["labeled" polynomials](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/LabeledRationalFunction.kt) : Labeled implementation of multivariate polynomials.
> - ["labeled" rational functions](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/LabeledPolynomial.kt) : Labeled implementation of multivariate rational functions.
> - ["labeled" polynomials and rational functions constructors](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/labeledConstructors.kt) : Constructors for labeled polynomials and rational functions.
> - ["labeled" polynomials and rational functions utilities](kmath-polynomial/src/commonMain/kotlin/space/kscience/kmath/functions/labeledUtil.kt) : Utilities for labeled polynomials and rational functions.
### [kmath-stat](kmath-stat)
>
>
@ -262,11 +240,6 @@ One can still use generic algebras though.
> - [linear algebra operations](kmath-tensors/src/commonMain/kotlin/space/kscience/kmath/tensors/api/LinearOpsTensorAlgebra.kt) : Advanced linear algebra operations like LU decomposition, SVD, etc.
### [kmath-trajectory](kmath-trajectory)
> Path and trajectory optimization
>
> **Maturity**: PROTOTYPE
### [kmath-viktor](kmath-viktor)
>
>
@ -325,4 +298,4 @@ Gradle `6.0+` is required for multiplatform artifacts.
The project requires a lot of additional work. The most important thing we need is a feedback about what features are
required the most. Feel free to create feature requests. We are also welcome to code contributions, especially in issues
marked with
[waiting for a hero](https://github.com/SciProgCentre/kmath/labels/waiting%20for%20a%20hero) label.
[waiting for a hero](https://github.com/mipt-npm/kmath/labels/waiting%20for%20a%20hero) label.

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@ -9,8 +9,8 @@ import kotlinx.benchmark.Benchmark
import kotlinx.benchmark.Blackhole
import kotlinx.benchmark.Scope
import kotlinx.benchmark.State
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.*
import space.kscience.kmath.operations.Algebra
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.bindSymbol
import space.kscience.kmath.operations.invoke
@ -94,6 +94,7 @@ class ExpressionsInterpretersBenchmark {
}
private val mst = node.toExpression(DoubleField)
@OptIn(UnstableKMathAPI::class)
private val wasm = node.wasmCompileToExpression(DoubleField)
private val estree = node.estreeCompileToExpression(DoubleField)

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@ -10,7 +10,7 @@ import kotlinx.benchmark.Blackhole
import org.openjdk.jmh.annotations.Benchmark
import org.openjdk.jmh.annotations.Scope
import org.openjdk.jmh.annotations.State
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.BigIntField
import space.kscience.kmath.operations.JBigIntegerField
import space.kscience.kmath.operations.invoke

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@ -13,7 +13,7 @@ import org.jetbrains.kotlinx.multik.api.Multik
import org.jetbrains.kotlinx.multik.api.ones
import org.jetbrains.kotlinx.multik.ndarray.data.DN
import org.jetbrains.kotlinx.multik.ndarray.data.DataType
import space.kscience.kmath.misc.UnsafeKMathAPI
import space.kscience.kmath.UnsafeKMathAPI
import space.kscience.kmath.nd.*
import space.kscience.kmath.nd4j.nd4j
import space.kscience.kmath.operations.DoubleField

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@ -15,7 +15,7 @@ allprojects {
}
group = "space.kscience"
version = "0.3.1-dev-11"
version = "0.4.0-dev-1"
}
subprojects {

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@ -385,7 +385,7 @@ import org.ejml.sparse.csc.factory.LinearSolverFactory_DSCC
import org.ejml.sparse.csc.factory.LinearSolverFactory_FSCC
import space.kscience.kmath.linear.*
import space.kscience.kmath.linear.Matrix
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.nd.StructureFeature
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.FloatField

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@ -3,13 +3,11 @@
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.stat
package space.kscience.kmath.series
import kotlinx.datetime.Instant
import space.kscience.kmath.operations.algebra
import space.kscience.kmath.operations.bufferAlgebra
import space.kscience.kmath.series.MonotonicSeriesAlgebra
import space.kscience.kmath.series.SeriesAlgebra
import kotlin.time.Duration
fun SeriesAlgebra.Companion.time(zero: Instant, step: Duration) = MonotonicSeriesAlgebra(

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@ -1,9 +1,8 @@
package space.kscience.kmath.series
import kotlinx.html.FlowContent
import kotlinx.html.h1
import space.kscience.kmath.operations.DoubleBufferOps
import kotlinx.html.p
import space.kscience.kmath.operations.algebra
import space.kscience.kmath.operations.bufferAlgebra
import space.kscience.kmath.operations.toList
@ -15,35 +14,43 @@ import space.kscience.plotly.*
import kotlin.math.PI
fun main() = with(Double.algebra.bufferAlgebra.seriesAlgebra()) {
fun FlowContent.plotSeries(buffer: Buffer<Double>) {
val ls = buffer.labels
plot {
scatter {
x.numbers = ls
y.numbers = buffer.toList()
}
fun Plot.plotSeries(name: String, buffer: Buffer<Double>) {
scatter {
this.name = name
x.numbers = buffer.labels
y.numbers = buffer.toList()
}
}
val s1 = series(100) { sin(2 * PI * it / 100) + 1.0 }
val s2 = s1.slice(20..50).moveTo(40)
val s3: Buffer<Double> = s1.zip(s2) { l, r -> l + r } //s1 + s2
val s4 = s3.map { ln(it) }
val kmTest: KMComparisonResult<Double> = ksComparisonStatistic(s1, s2)
Plotly.page {
h1 { +"This is my plot" }
p{
+"Kolmogorov-smirnov test for s1 and s2: ${kmTest.value}"
}
plot{
plotSeries("s1", s1)
plotSeries("s2", s2)
plotSeries("s3", s3)
plotSeries("s4", s4)
layout {
xaxis {
range(0.0..100.0)
}
}
}
}
val s1 = series(100) { sin(2 * PI * it / 100) + 1.0 }
val s2 = s1.slice(20..50).moveTo(40)
val s3: Buffer<Double> = s1.zip(s2) { l, r -> l + r } //s1 + s2
val s4 = DoubleBufferOps.ln(s3)
@Suppress("UNUSED_VARIABLE") val kmTest: KMComparisonResult<Double> = ksComparisonStatistic(s1, s2)
Plotly.page {
h1 { +"This is my plot" }
plotSeries(s1)
plotSeries(s2)
plotSeries(s4)
}.makeFile()
}

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@ -5,7 +5,7 @@
package space.kscience.kmath.structures
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.*
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.ExtendedField

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@ -5,7 +5,7 @@
package space.kscience.kmath.structures
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.BufferND
import space.kscience.kmath.nd.ColumnStrides
import space.kscience.kmath.nd.ShapeND

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@ -10,7 +10,7 @@ Extensions to MST API: transformations, dynamic compilation and visualization.
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-ast:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-ast:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -20,7 +20,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-ast:0.3.1-dev-1'
implementation 'space.kscience:kmath-ast:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -31,7 +31,7 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-ast:0.3.1-dev-1")
implementation("space.kscience:kmath-ast:0.4.0-dev-1")
}
```

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@ -5,9 +5,9 @@
package space.kscience.kmath.ast
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Expression
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.Algebra
import space.kscience.kmath.operations.NumericAlgebra

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@ -5,9 +5,9 @@
package space.kscience.kmath.ast
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.MST
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.Algebra
import space.kscience.kmath.operations.NumericAlgebra
import space.kscience.kmath.operations.bindSymbolOrNull

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@ -5,7 +5,7 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* [SyntaxRenderer] implementation for LaTeX.

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@ -5,7 +5,7 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* [SyntaxRenderer] implementation for MathML.

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@ -5,8 +5,8 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.MST
import space.kscience.kmath.misc.UnstableKMathAPI
/**
* Renders [MST] to [MathSyntax].

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@ -5,7 +5,7 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* Syntax node for mathematical typography.

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@ -5,7 +5,7 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* Abstraction of writing [MathSyntax] as a string of an actual markup language. Typical implementation should

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@ -5,10 +5,10 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.ast.rendering.FeaturedMathRenderer.RenderFeature
import space.kscience.kmath.expressions.MST
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.*
import kotlin.reflect.KClass

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@ -5,8 +5,8 @@
package space.kscience.kmath.ast.rendering
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.ast.rendering.FeaturedMathRendererWithPostProcess.PostProcessPhase
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.FieldOps
import space.kscience.kmath.operations.GroupOps
import space.kscience.kmath.operations.PowerOperations

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@ -5,6 +5,7 @@
package space.kscience.kmath.estree
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.ast.TypedMst
import space.kscience.kmath.ast.evaluateConstants
import space.kscience.kmath.estree.internal.ESTreeBuilder
@ -13,7 +14,6 @@ import space.kscience.kmath.expressions.MST
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.expressions.invoke
import space.kscience.kmath.internal.estree.BaseExpression
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.Algebra
/**

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@ -5,11 +5,11 @@
package space.kscience.kmath.wasm.internal
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.ast.TypedMst
import space.kscience.kmath.expressions.*
import space.kscience.kmath.internal.binaryen.*
import space.kscience.kmath.internal.webassembly.Instance
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.internal.binaryen.Module as BinaryenModule
import space.kscience.kmath.internal.webassembly.Module as WasmModule

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@ -7,10 +7,10 @@
package space.kscience.kmath.wasm
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.ast.TypedMst
import space.kscience.kmath.ast.evaluateConstants
import space.kscience.kmath.expressions.*
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.IntRing
import space.kscience.kmath.wasm.internal.DoubleWasmBuilder

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@ -7,11 +7,11 @@
package space.kscience.kmath.asm
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.asm.internal.*
import space.kscience.kmath.ast.TypedMst
import space.kscience.kmath.ast.evaluateConstants
import space.kscience.kmath.expressions.*
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.Algebra
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.IntRing

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@ -11,9 +11,9 @@ import org.objectweb.asm.Opcodes.*
import org.objectweb.asm.Type
import org.objectweb.asm.Type.*
import org.objectweb.asm.commons.InstructionAdapter
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.ast.TypedMst
import space.kscience.kmath.expressions.*
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.*
import java.lang.invoke.MethodHandles
import java.lang.invoke.MethodType

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@ -6,7 +6,7 @@ Commons math binding for kmath
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-commons:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-commons:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -16,7 +16,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-commons:0.3.1-dev-1'
implementation 'space.kscience:kmath-commons:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -27,6 +27,6 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-commons:0.3.1-dev-1")
implementation("space.kscience:kmath-commons:0.4.0-dev-1")
}
```

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@ -8,8 +8,8 @@
package space.kscience.kmath.commons.expressions
import org.apache.commons.math3.analysis.differentiation.DerivativeStructure
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.*
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.ExtendedField
import space.kscience.kmath.operations.NumbersAddOps

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@ -7,8 +7,8 @@ package space.kscience.kmath.commons.integration
import org.apache.commons.math3.analysis.integration.IterativeLegendreGaussIntegrator
import org.apache.commons.math3.analysis.integration.SimpsonIntegrator
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.integration.*
import space.kscience.kmath.misc.UnstableKMathAPI
/**
* Integration wrapper for Common-maths UnivariateIntegrator

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@ -6,8 +6,8 @@
package space.kscience.kmath.commons.linear
import org.apache.commons.math3.linear.*
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.*
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.StructureFeature
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.structures.Buffer

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@ -13,11 +13,11 @@ import org.apache.commons.math3.optim.nonlinear.scalar.ObjectiveFunctionGradient
import org.apache.commons.math3.optim.nonlinear.scalar.gradient.NonLinearConjugateGradientOptimizer
import org.apache.commons.math3.optim.nonlinear.scalar.noderiv.NelderMeadSimplex
import org.apache.commons.math3.optim.nonlinear.scalar.noderiv.SimplexOptimizer
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.expressions.SymbolIndexer
import space.kscience.kmath.expressions.derivative
import space.kscience.kmath.expressions.withSymbols
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.misc.log
import space.kscience.kmath.optimization.*
import kotlin.collections.set

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@ -6,9 +6,9 @@
package space.kscience.kmath.commons.integration
import org.junit.jupiter.api.Test
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.integration.integrate
import space.kscience.kmath.integration.value
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.DoubleField.sin
import kotlin.math.PI
import kotlin.math.abs

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@ -6,13 +6,13 @@
package space.kscience.kmath.commons.optimization
import kotlinx.coroutines.runBlocking
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.distributions.NormalDistribution
import space.kscience.kmath.expressions.DSFieldExpression
import space.kscience.kmath.expressions.Symbol.Companion.x
import space.kscience.kmath.expressions.Symbol.Companion.y
import space.kscience.kmath.expressions.autodiff
import space.kscience.kmath.expressions.symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.DoubleBufferOps.Companion.map
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.optimization.*

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@ -8,7 +8,7 @@ Complex and hypercomplex number systems in KMath.
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-complex:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-complex:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -18,7 +18,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-complex:0.3.1-dev-1'
implementation 'space.kscience:kmath-complex:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -29,6 +29,6 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-complex:0.3.1-dev-1")
implementation("space.kscience:kmath-complex:0.4.0-dev-1")
}
```

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@ -5,10 +5,10 @@
package space.kscience.kmath.complex
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.memory.MemoryReader
import space.kscience.kmath.memory.MemorySpec
import space.kscience.kmath.memory.MemoryWriter
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.*
import kotlin.math.*

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@ -5,8 +5,8 @@
package space.kscience.kmath.complex
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.nd.*
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.Buffer

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@ -5,10 +5,10 @@
package space.kscience.kmath.complex
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.memory.MemoryReader
import space.kscience.kmath.memory.MemorySpec
import space.kscience.kmath.memory.MemoryWriter
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.MemoryBuffer

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@ -15,7 +15,7 @@ performance calculations to code generation.
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-core:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-core:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -25,7 +25,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-core:0.3.1-dev-1'
implementation 'space.kscience:kmath-core:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -36,6 +36,6 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-core:0.3.1-dev-1")
implementation("space.kscience:kmath-core:0.4.0-dev-1")
}
```

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@ -6,6 +6,7 @@ kscience{
jvm()
js()
native()
// wasm()
dependencies {
api(projects.kmathMemory)

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@ -5,9 +5,9 @@
package space.kscience.kmath.data
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.structures.Buffer

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@ -5,9 +5,9 @@
package space.kscience.kmath.data
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.structures.Buffer
import kotlin.math.max

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@ -5,8 +5,8 @@
package space.kscience.kmath.data
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.structures.Buffer

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@ -5,8 +5,8 @@
package space.kscience.kmath.data
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.structures.Buffer
/**

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@ -5,8 +5,8 @@
package space.kscience.kmath.domains
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
@UnstableKMathAPI
public abstract class Domain1D<T : Comparable<T>>(public val range: ClosedRange<T>) : Domain<T> {

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@ -4,7 +4,7 @@
*/
package space.kscience.kmath.domains
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* n-dimensional volume

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@ -4,8 +4,8 @@
*/
package space.kscience.kmath.domains
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.DoubleBuffer
import space.kscience.kmath.structures.indices

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@ -4,8 +4,8 @@
*/
package space.kscience.kmath.domains
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
@UnstableKMathAPI
public class UnconstrainedDomain(override val dimension: Int) : DoubleDomain {

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@ -5,7 +5,7 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.MutableBuffer

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@ -5,7 +5,7 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.Algebra
import kotlin.jvm.JvmName
import kotlin.properties.ReadOnlyProperty

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@ -5,7 +5,7 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.*
/**

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@ -7,9 +7,9 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Matrix
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.structures.getOrNull
public class NamedMatrix<T>(public val values: Matrix<T>, public val indexer: SymbolIndexer) : Matrix<T> by values {

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@ -5,8 +5,8 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.asBuffer
import kotlin.contracts.InvocationKind

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@ -5,8 +5,8 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.structures.BufferFactory
import space.kscience.kmath.structures.DoubleBuffer

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@ -5,7 +5,7 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.*
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.Buffer

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@ -5,7 +5,7 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.*
import space.kscience.kmath.operations.DoubleBufferOps
import space.kscience.kmath.operations.DoubleField

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@ -5,7 +5,7 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.nd.MutableStructure2D
import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.nd.StructureFeature

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@ -5,7 +5,7 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.BufferAccessor2D
import space.kscience.kmath.structures.DoubleBuffer

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@ -5,7 +5,7 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.Ring
import space.kscience.kmath.structures.BufferAccessor2D
import space.kscience.kmath.structures.MutableBuffer

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@ -5,8 +5,8 @@
package space.kscience.kmath.linear
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.misc.FeatureSet
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.StructureFeature
import space.kscience.kmath.operations.Ring
import kotlin.reflect.KClass

View File

@ -19,4 +19,4 @@ public inline fun <T, R> List<T>.zipWithNextCircular(transform: (a: T, b: T) ->
}
}
public inline fun <T> List<T>.zipWithNextCircular(): List<Pair<T,T>> = zipWithNextCircular { l, r -> l to r }
public fun <T> List<T>.zipWithNextCircular(): List<Pair<T,T>> = zipWithNextCircular { l, r -> l to r }

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@ -6,6 +6,7 @@
package space.kscience.kmath.misc
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.VirtualBuffer

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@ -5,8 +5,8 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.*
import kotlin.reflect.KClass

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@ -7,8 +7,8 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.*
public interface BufferAlgebraND<T, out A : Algebra<T>> : AlgebraND<T, A> {

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.BufferFactory
import space.kscience.kmath.structures.MutableBuffer

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@ -5,8 +5,8 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.DoubleBuffer
import kotlin.contracts.InvocationKind

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.IntRing
import space.kscience.kmath.operations.NumbersAddOps
import space.kscience.kmath.operations.bufferAlgebra

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
public class PermutedStructureND<T>(

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.UnsafeKMathAPI
import space.kscience.kmath.UnsafeKMathAPI
import kotlin.jvm.JvmInline
/**

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.NumbersAddOps
import space.kscience.kmath.operations.ShortRing
import space.kscience.kmath.operations.bufferAlgebra

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.operations.asSequence
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.MutableBuffer

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.MutableBuffer
import space.kscience.kmath.structures.MutableListBuffer

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@ -5,10 +5,10 @@
package space.kscience.kmath.nd
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.linear.LinearSpace
import space.kscience.kmath.misc.Feature
import space.kscience.kmath.misc.Featured
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.operations.Ring
import space.kscience.kmath.operations.invoke
import space.kscience.kmath.structures.Buffer

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@ -5,8 +5,8 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
public open class VirtualStructureND<T>(
override val shape: ShapeND,

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
@OptIn(PerformancePitfall::class)
public fun <T> StructureND<T>.roll(axis: Int, step: Int = 1): StructureND<T> {

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@ -5,7 +5,7 @@
package space.kscience.kmath.nd
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
public interface StructureNDOfDouble : StructureND<Double> {
/**

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@ -5,8 +5,8 @@
package space.kscience.kmath.operations
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.Ring.Companion.optimizedPower
import space.kscience.kmath.structures.MutableBufferFactory

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@ -5,7 +5,7 @@
package space.kscience.kmath.operations
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.nd.BufferedRingOpsND
import space.kscience.kmath.operations.BigInt.Companion.BASE
import space.kscience.kmath.operations.BigInt.Companion.BASE_SIZE

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@ -5,10 +5,11 @@
package space.kscience.kmath.operations
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.structures.*
import kotlin.math.*
import kotlin.math.pow
import kotlin.math.sqrt
/**
* [ExtendedFieldOps] over [DoubleBuffer].

View File

@ -5,9 +5,9 @@
package space.kscience.kmath.operations
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.expressions.symbol
import space.kscience.kmath.misc.UnstableKMathAPI
/**
* An algebra for generic boolean logic

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@ -5,7 +5,7 @@
package space.kscience.kmath.operations
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import kotlin.math.E
import kotlin.math.PI

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@ -5,7 +5,7 @@
package space.kscience.kmath.operations
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.structures.Buffer
/**

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@ -1,6 +1,6 @@
package space.kscience.kmath.structures
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* A buffer that wraps an original buffer

View File

@ -17,9 +17,7 @@ import space.kscience.kmath.memory.*
public open class MemoryBuffer<T : Any>(protected val memory: Memory, protected val spec: MemorySpec<T>) : Buffer<T> {
override val size: Int get() = memory.size / spec.objectSize
private val reader: MemoryReader = memory.reader()
override operator fun get(index: Int): T = reader.read(spec, spec.objectSize * index)
override operator fun get(index: Int): T = memory.read { read(spec, spec.objectSize * index) }
override operator fun iterator(): Iterator<T> = (0 until size).asSequence().map { get(it) }.iterator()
override fun toString(): String = Buffer.toString(this)

View File

@ -5,7 +5,7 @@
package space.kscience.kmath.operations
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.structures.*
/**

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@ -1,6 +1,6 @@
package space.kscience.kmath.structures
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* Non-boxing access to primitive [Double]

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@ -7,7 +7,7 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.DoubleField
import kotlin.contracts.InvocationKind
import kotlin.contracts.contract

View File

@ -5,8 +5,8 @@
package space.kscience.kmath.expressions
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol.Companion.x
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.operations.BooleanAlgebra
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.invoke

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@ -5,8 +5,8 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.nd.StructureND
import space.kscience.kmath.operations.algebra
import kotlin.test.Test

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@ -5,8 +5,8 @@
package space.kscience.kmath.linear
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.nd.StructureND
import space.kscience.kmath.nd.as2D
import space.kscience.kmath.operations.algebra

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@ -5,7 +5,7 @@
package space.kscience.kmath.operations
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.testutils.RingVerifier
import kotlin.math.pow
import kotlin.test.Test

View File

@ -5,13 +5,18 @@
package space.kscience.kmath.structures
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.linear.linearSpace
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.nd.*
import space.kscience.kmath.nd.StructureND
import space.kscience.kmath.nd.get
import space.kscience.kmath.nd.ndAlgebra
import space.kscience.kmath.nd.structureND
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.Norm
import space.kscience.kmath.operations.algebra
import space.kscience.kmath.operations.invoke
import kotlin.collections.component1
import kotlin.collections.component2
import kotlin.math.abs
import kotlin.math.pow
import kotlin.test.Test

View File

@ -0,0 +1,12 @@
/*
* Copyright 2018-2023 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.misc
public actual fun Long.toIntExact(): Int {
val i = toInt()
if (i.toLong() == this) throw ArithmeticException("integer overflow")
return i
}

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@ -0,0 +1,12 @@
/*
* Copyright 2018-2023 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.operations
/**
* Check if number is an integer from platform point of view
*/
public actual fun Number.isInteger(): Boolean =
(this is Int) || (this is Long) || (this is Short) || (this.toDouble() % 1 == 0.0)

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@ -6,7 +6,7 @@
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-coroutines:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-coroutines:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -16,7 +16,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-coroutines:0.3.1-dev-1'
implementation 'space.kscience:kmath-coroutines:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -27,6 +27,6 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-coroutines:0.3.1-dev-1")
implementation("space.kscience:kmath-coroutines:0.4.0-dev-1")
}
```

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@ -10,7 +10,7 @@ import kotlinx.coroutines.flow.FlowCollector
import kotlinx.coroutines.flow.flow
import kotlinx.coroutines.sync.Mutex
import kotlinx.coroutines.sync.withLock
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.UnstableKMathAPI
/**
* A not-necessary-Markov chain of some type

View File

@ -6,8 +6,8 @@
package space.kscience.kmath.structures
import kotlinx.coroutines.*
import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.coroutines.Math
import space.kscience.kmath.misc.PerformancePitfall
import space.kscience.kmath.nd.ColumnStrides
import space.kscience.kmath.nd.ShapeND
import space.kscience.kmath.nd.StructureND

View File

@ -6,7 +6,7 @@ A proof of concept module for adding type-safe dimensions to structures
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-dimensions:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-dimensions:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -16,7 +16,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-dimensions:0.3.1-dev-1'
implementation 'space.kscience:kmath-dimensions:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -27,6 +27,6 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-dimensions:0.3.1-dev-1")
implementation("space.kscience:kmath-dimensions:0.4.0-dev-1")
}
```

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@ -9,7 +9,7 @@ EJML based linear algebra implementation.
## Artifact:
The Maven coordinates of this project are `space.kscience:kmath-ejml:0.3.1-dev-1`.
The Maven coordinates of this project are `space.kscience:kmath-ejml:0.4.0-dev-1`.
**Gradle Groovy:**
```groovy
@ -19,7 +19,7 @@ repositories {
}
dependencies {
implementation 'space.kscience:kmath-ejml:0.3.1-dev-1'
implementation 'space.kscience:kmath-ejml:0.4.0-dev-1'
}
```
**Gradle Kotlin DSL:**
@ -30,6 +30,6 @@ repositories {
}
dependencies {
implementation("space.kscience:kmath-ejml:0.3.1-dev-1")
implementation("space.kscience:kmath-ejml:0.4.0-dev-1")
}
```

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@ -5,11 +5,11 @@
package space.kscience.kmath.ejml
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.InverseMatrixFeature
import space.kscience.kmath.linear.LinearSpace
import space.kscience.kmath.linear.Matrix
import space.kscience.kmath.linear.Point
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.operations.Ring

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@ -19,9 +19,9 @@ import org.ejml.sparse.csc.factory.DecompositionFactory_DSCC
import org.ejml.sparse.csc.factory.DecompositionFactory_FSCC
import org.ejml.sparse.csc.factory.LinearSolverFactory_DSCC
import org.ejml.sparse.csc.factory.LinearSolverFactory_FSCC
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.*
import space.kscience.kmath.linear.Matrix
import space.kscience.kmath.misc.UnstableKMathAPI
import space.kscience.kmath.nd.StructureFeature
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.FloatField

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