Remove kotlinx-io dependency, use DeferScope to dispose native memory

build.gradle.kts

@@ -12,7 +12,6 @@ allprojects {
         maven("https://dl.bintray.com/kotlin/kotlin-eap")
         maven("https://dl.bintray.com/kotlin/kotlinx")
         maven("https://dl.bintray.com/hotkeytlt/maven")
-        maven("https://dl.bintray.com/commandertvis/kotlinx-io/")
     }
 
     group = "kscience.kmath"

buildSrc/src/main/kotlin/kscience/kmath/gsl/codegen/matricesCodegen.kt

@@ -19,8 +19,9 @@ private fun KtPsiFactory.createMatrixClass(
 
     @Language("kotlin") val text = """internal class $className(
     override val nativeHandle: CPointer<$structName>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<$kotlinTypeName, $structName>() {
+    scope: DeferScope
+) : GslMatrix<$kotlinTypeName, $structName>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -30,7 +31,7 @@ private fun KtPsiFactory.createMatrixClass(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): $className =
-        ${className}(nativeHandle, this.features + features)
+        ${className}(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): $kotlinTypeName = ${
         fn("gsl_matrixRget", cTypeName)
@@ -42,7 +43,7 @@ private fun KtPsiFactory.createMatrixClass(
     override fun copy(): $className {
         val new = requireNotNull(${fn("gsl_matrixRalloc", cTypeName)}(rowNum.toULong(), colNum.toULong()))
         ${fn("gsl_matrixRmemcpy", cTypeName)}(new, nativeHandle)
-        return $className(new, features)
+        return $className(new, features, scope)
     }
 
     override fun close(): Unit = ${fn("gsl_matrixRfree", cTypeName)}(nativeHandle)

buildSrc/src/main/kotlin/kscience/kmath/gsl/codegen/vectorsCodegen.kt

@@ -18,7 +18,8 @@ private fun KtPsiFactory.createVectorClass(
     val structName = sn("gsl_vectorR", cTypeName)
 
     @Language("kotlin") val text =
-        """internal class $className(override val nativeHandle: CPointer<$structName>) : GslVector<$kotlinTypeName, $structName>() {
+        """internal class $className(override val nativeHandle: CPointer<$structName>, scope: DeferScope) 
+            : GslVector<$kotlinTypeName, $structName>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -30,7 +31,7 @@ private fun KtPsiFactory.createVectorClass(
     override fun copy(): $className {
         val new = requireNotNull(${fn("gsl_vectorRalloc", cTypeName)}(size.toULong()))
         ${fn("gsl_vectorRmemcpy", cTypeName)}(new, nativeHandle)
-        return ${className}(new)
+        return ${className}(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {

kmath-gsl/build.gradle.kts

@@ -8,6 +8,8 @@ plugins {
 }
 
 kotlin {
+    explicitApiWarning()
+
     val nativeTarget = when (System.getProperty("os.name")) {
         "Mac OS X" -> macosX64("native")
         "Linux" -> linuxX64("native")
@@ -20,7 +22,11 @@ kotlin {
 
     val main by nativeTarget.compilations.getting {
         cinterops {
-            val libgsl by creating { includeDirs { headerFilterOnly("/usr/include/", "/usr/local/") } }
+            val libgsl by creating {
+                includeDirs {
+                    headerFilterOnly("/usr/include/", "/usr/local/")
+                }
+            }
         }
     }
 
@@ -35,7 +41,6 @@ kotlin {
 
             dependencies {
                 api(project(":kmath-core"))
-                api("org.jetbrains.kotlinx:kotlinx-io:0.2.0-tvis-3")
             }
         }
     }

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/GslComplex.kt

@@ -14,8 +14,9 @@ internal fun Complex.toGsl(): CValue<gsl_complex> = cValue {
 
 internal class GslComplexMatrix(
     override val nativeHandle: CPointer<gsl_matrix_complex>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<Complex, gsl_matrix_complex>() {
+    scope: DeferScope
+) : GslMatrix<Complex, gsl_matrix_complex>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -25,7 +26,7 @@ internal class GslComplexMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslComplexMatrix =
-        GslComplexMatrix(nativeHandle, this.features + features)
+        GslComplexMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): Complex =
         gsl_matrix_complex_get(nativeHandle, i.toULong(), j.toULong()).toKMath()
@@ -36,7 +37,7 @@ internal class GslComplexMatrix(
     override fun copy(): GslComplexMatrix {
         val new = requireNotNull(gsl_matrix_complex_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_complex_memcpy(new, nativeHandle)
-        return GslComplexMatrix(new, features)
+        return GslComplexMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_complex_free(nativeHandle)
@@ -47,18 +48,20 @@ internal class GslComplexMatrix(
     }
 }
 
-internal class GslComplexVector(override val nativeHandle: CPointer<gsl_vector_complex>) :
+internal class GslComplexVector(override val nativeHandle: CPointer<gsl_vector_complex>, scope: DeferScope) :
-    GslVector<Complex, gsl_vector_complex>() {
+    GslVector<Complex, gsl_vector_complex>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
     override fun get(index: Int): Complex = gsl_vector_complex_get(nativeHandle, index.toULong()).toKMath()
-    override fun set(index: Int, value: Complex): Unit = gsl_vector_complex_set(nativeHandle, index.toULong(), value.toGsl())
+
+    override fun set(index: Int, value: Complex): Unit =
+        gsl_vector_complex_set(nativeHandle, index.toULong(), value.toGsl())
 
     override fun copy(): GslComplexVector {
         val new = requireNotNull(gsl_vector_complex_alloc(size.toULong()))
         gsl_vector_complex_memcpy(new, nativeHandle)
-        return GslComplexVector(new)
+        return GslComplexVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/GslMatrix.kt

@@ -1,10 +1,12 @@
 package kscience.kmath.gsl
 
 import kotlinx.cinterop.CStructVar
+import kotlinx.cinterop.DeferScope
 import kscience.kmath.linear.FeaturedMatrix
 import kscience.kmath.structures.NDStructure
 
-public abstract class GslMatrix<T : Any, H : CStructVar> internal constructor(): GslMemoryHolder<H>(),
+public abstract class GslMatrix<T : Any, H : CStructVar> internal constructor(scope: DeferScope) :
+    GslMemoryHolder<H>(scope),
     FeaturedMatrix<T> {
     internal abstract operator fun set(i: Int, j: Int, value: T)
     internal abstract fun copy(): GslMatrix<T, H>

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/GslMatrixContexts.kt

@@ -1,6 +1,7 @@
 package kscience.kmath.gsl
 
 import kotlinx.cinterop.CStructVar
+import kotlinx.cinterop.DeferScope
 import kotlinx.cinterop.pointed
 import kscience.kmath.linear.MatrixContext
 import kscience.kmath.linear.Point
@@ -18,8 +19,9 @@ internal inline fun <T : Any, H : CStructVar> GslMatrix<T, H>.fill(initializer:
 internal inline fun <T : Any, H : CStructVar> GslVector<T, H>.fill(initializer: (Int) -> T): GslVector<T, H> =
     apply { (0 until size).forEach { index -> this[index] = initializer(index) } }
 
-public abstract class GslMatrixContext<T : Any, H1 : CStructVar, H2 : CStructVar> internal constructor() :
+public abstract class GslMatrixContext<T : Any, H1 : CStructVar, H2 : CStructVar> internal constructor(
-    MatrixContext<T> {
+    internal val scope: DeferScope
+) : MatrixContext<T> {
     @Suppress("UNCHECKED_CAST")
     public fun Matrix<T>.toGsl(): GslMatrix<T, H1> = (if (this is GslMatrix<*, *>)
         this as GslMatrix<T, H1>
@@ -37,19 +39,19 @@ public abstract class GslMatrixContext<T : Any, H1 : CStructVar, H2 : CStructVar
         produceDirtyMatrix(rows, columns).fill(initializer)
 }
 
-public object GslRealMatrixContext : GslMatrixContext<Double, gsl_matrix, gsl_vector>() {
+public class GslRealMatrixContext(scope: DeferScope) : GslMatrixContext<Double, gsl_matrix, gsl_vector>(scope) {
     override fun produceDirtyMatrix(rows: Int, columns: Int): GslMatrix<Double, gsl_matrix> =
-        GslRealMatrix(requireNotNull(gsl_matrix_alloc(rows.toULong(), columns.toULong())))
+        GslRealMatrix(nativeHandle = requireNotNull(gsl_matrix_alloc(rows.toULong(), columns.toULong())), scope = scope)
 
     override fun produceDirtyVector(size: Int): GslVector<Double, gsl_vector> =
-        GslRealVector(requireNotNull(gsl_vector_alloc(size.toULong())))
+        GslRealVector(nativeHandle = requireNotNull(gsl_vector_alloc(size.toULong())), scope = scope)
 
     public override fun Matrix<Double>.dot(other: Matrix<Double>): GslMatrix<Double, gsl_matrix> {
         val x = toGsl().nativeHandle
         val a = other.toGsl().nativeHandle
         val result = requireNotNull(gsl_matrix_calloc(a.pointed.size1, a.pointed.size2))
         gsl_blas_dgemm(CblasNoTrans, CblasNoTrans, 1.0, x, a, 1.0, result)
-        return GslRealMatrix(result)
+        return GslRealMatrix(result, scope = scope)
     }
 
     public override fun Matrix<Double>.dot(vector: Point<Double>): GslVector<Double, gsl_vector> {
@@ -57,7 +59,7 @@ public object GslRealMatrixContext : GslMatrixContext<Double, gsl_matrix, gsl_ve
         val a = vector.toGsl().nativeHandle
         val result = requireNotNull(gsl_vector_calloc(a.pointed.size))
         gsl_blas_dgemv(CblasNoTrans, 1.0, x, a, 1.0, result)
-        return GslRealVector(result)
+        return GslRealVector(result, scope = scope)
     }
 
     public override fun Matrix<Double>.times(value: Double): GslMatrix<Double, gsl_matrix> {
@@ -79,19 +81,20 @@ public object GslRealMatrixContext : GslMatrixContext<Double, gsl_matrix, gsl_ve
     }
 }
 
-public object GslFloatMatrixContext : GslMatrixContext<Float, gsl_matrix_float, gsl_vector_float>() {
+public class GslFloatMatrixContext(scope: DeferScope) :
+    GslMatrixContext<Float, gsl_matrix_float, gsl_vector_float>(scope) {
     override fun produceDirtyMatrix(rows: Int, columns: Int): GslMatrix<Float, gsl_matrix_float> =
-        GslFloatMatrix(requireNotNull(gsl_matrix_float_alloc(rows.toULong(), columns.toULong())))
+        GslFloatMatrix(requireNotNull(gsl_matrix_float_alloc(rows.toULong(), columns.toULong())), scope = scope)
 
     override fun produceDirtyVector(size: Int): GslVector<Float, gsl_vector_float> =
-        GslFloatVector(requireNotNull(gsl_vector_float_alloc(size.toULong())))
+        GslFloatVector(requireNotNull(gsl_vector_float_alloc(size.toULong())), scope)
 
     public override fun Matrix<Float>.dot(other: Matrix<Float>): GslMatrix<Float, gsl_matrix_float> {
         val x = toGsl().nativeHandle
         val a = other.toGsl().nativeHandle
         val result = requireNotNull(gsl_matrix_float_calloc(a.pointed.size1, a.pointed.size2))
         gsl_blas_sgemm(CblasNoTrans, CblasNoTrans, 1f, x, a, 1f, result)
-        return GslFloatMatrix(result)
+        return GslFloatMatrix(nativeHandle = result, scope = scope)
     }
 
     public override fun Matrix<Float>.dot(vector: Point<Float>): GslVector<Float, gsl_vector_float> {
@@ -99,7 +102,7 @@ public object GslFloatMatrixContext : GslMatrixContext<Float, gsl_matrix_float,
         val a = vector.toGsl().nativeHandle
         val result = requireNotNull(gsl_vector_float_calloc(a.pointed.size))
         gsl_blas_sgemv(CblasNoTrans, 1f, x, a, 1f, result)
-        return GslFloatVector(result)
+        return GslFloatVector(nativeHandle = result, scope = scope)
     }
 
     public override fun Matrix<Float>.times(value: Float): GslMatrix<Float, gsl_matrix_float> {
@@ -121,19 +124,22 @@ public object GslFloatMatrixContext : GslMatrixContext<Float, gsl_matrix_float,
     }
 }
 
-public object GslComplexMatrixContext : GslMatrixContext<Complex, gsl_matrix_complex, gsl_vector_complex>() {
+public class GslComplexMatrixContext(scope: DeferScope) :
-    override fun produceDirtyMatrix(rows: Int, columns: Int): GslMatrix<Complex, gsl_matrix_complex> =
+    GslMatrixContext<Complex, gsl_matrix_complex, gsl_vector_complex>(scope) {
-        GslComplexMatrix(requireNotNull(gsl_matrix_complex_alloc(rows.toULong(), columns.toULong())))
+    override fun produceDirtyMatrix(rows: Int, columns: Int): GslMatrix<Complex, gsl_matrix_complex> = GslComplexMatrix(
+        nativeHandle = requireNotNull(gsl_matrix_complex_alloc(rows.toULong(), columns.toULong())),
+        scope = scope
+    )
 
     override fun produceDirtyVector(size: Int): GslVector<Complex, gsl_vector_complex> =
-        GslComplexVector(requireNotNull(gsl_vector_complex_alloc(size.toULong())))
+        GslComplexVector(requireNotNull(gsl_vector_complex_alloc(size.toULong())), scope)
 
     public override fun Matrix<Complex>.dot(other: Matrix<Complex>): GslMatrix<Complex, gsl_matrix_complex> {
         val x = toGsl().nativeHandle
         val a = other.toGsl().nativeHandle
         val result = requireNotNull(gsl_matrix_complex_calloc(a.pointed.size1, a.pointed.size2))
         gsl_blas_zgemm(CblasNoTrans, CblasNoTrans, ComplexField.one.toGsl(), x, a, ComplexField.one.toGsl(), result)
-        return GslComplexMatrix(result)
+        return GslComplexMatrix(nativeHandle = result, scope = scope)
     }
 
     public override fun Matrix<Complex>.dot(vector: Point<Complex>): GslVector<Complex, gsl_vector_complex> {
@@ -141,7 +147,7 @@ public object GslComplexMatrixContext : GslMatrixContext<Complex, gsl_matrix_com
         val a = vector.toGsl().nativeHandle
         val result = requireNotNull(gsl_vector_complex_calloc(a.pointed.size))
         gsl_blas_zgemv(CblasNoTrans, ComplexField.one.toGsl(), x, a, ComplexField.one.toGsl(), result)
-        return GslComplexVector(result)
+        return GslComplexVector(result, scope)
     }
 
     public override fun Matrix<Complex>.times(value: Complex): GslMatrix<Complex, gsl_matrix_complex> {

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/GslMemoryHolder.kt

@@ -2,8 +2,14 @@ package kscience.kmath.gsl
 
 import kotlinx.cinterop.CPointer
 import kotlinx.cinterop.CStructVar
-import kotlinx.io.Closeable
+import kotlinx.cinterop.DeferScope
 
-public abstract class GslMemoryHolder<H : CStructVar> internal constructor() : Closeable {
+public abstract class GslMemoryHolder<H : CStructVar> internal constructor(internal val scope: DeferScope) {
     internal abstract val nativeHandle: CPointer<H>
+
+    init {
+        scope.defer(::close)
+    }
+
+    internal abstract fun close()
 }

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/GslVector.kt

@@ -1,9 +1,11 @@
 package kscience.kmath.gsl
 
 import kotlinx.cinterop.CStructVar
+import kotlinx.cinterop.DeferScope
 import kscience.kmath.linear.Point
 
-public abstract class GslVector<T, H : CStructVar> internal constructor() : GslMemoryHolder<H>(), Point<T> {
+public abstract class GslVector<T, H : CStructVar> internal constructor(scope: DeferScope) :
+    GslMemoryHolder<H>(scope), Point<T> {
     internal abstract operator fun set(index: Int, value: T)
     internal abstract fun copy(): GslVector<T, H>
 

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/_Matrices.kt

@@ -6,8 +6,9 @@ import org.gnu.gsl.*
 
 internal class GslRealMatrix(
     override val nativeHandle: CPointer<gsl_matrix>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<Double, gsl_matrix>() {
+    scope: DeferScope
+) : GslMatrix<Double, gsl_matrix>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -17,7 +18,7 @@ internal class GslRealMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslRealMatrix =
-        GslRealMatrix(nativeHandle, this.features + features)
+        GslRealMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): Double = gsl_matrix_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -27,7 +28,7 @@ internal class GslRealMatrix(
     override fun copy(): GslRealMatrix {
         val new = requireNotNull(gsl_matrix_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_memcpy(new, nativeHandle)
-        return GslRealMatrix(new, features)
+        return GslRealMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_free(nativeHandle)
@@ -40,8 +41,9 @@ internal class GslRealMatrix(
 
 internal class GslFloatMatrix(
     override val nativeHandle: CPointer<gsl_matrix_float>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<Float, gsl_matrix_float>() {
+    scope: DeferScope
+) : GslMatrix<Float, gsl_matrix_float>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -51,7 +53,7 @@ internal class GslFloatMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslFloatMatrix =
-        GslFloatMatrix(nativeHandle, this.features + features)
+        GslFloatMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): Float = gsl_matrix_float_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -61,7 +63,7 @@ internal class GslFloatMatrix(
     override fun copy(): GslFloatMatrix {
         val new = requireNotNull(gsl_matrix_float_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_float_memcpy(new, nativeHandle)
-        return GslFloatMatrix(new, features)
+        return GslFloatMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_float_free(nativeHandle)
@@ -74,8 +76,9 @@ internal class GslFloatMatrix(
 
 internal class GslShortMatrix(
     override val nativeHandle: CPointer<gsl_matrix_short>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<Short, gsl_matrix_short>() {
+    scope: DeferScope
+) : GslMatrix<Short, gsl_matrix_short>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -85,7 +88,7 @@ internal class GslShortMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslShortMatrix =
-        GslShortMatrix(nativeHandle, this.features + features)
+        GslShortMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): Short = gsl_matrix_short_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -95,7 +98,7 @@ internal class GslShortMatrix(
     override fun copy(): GslShortMatrix {
         val new = requireNotNull(gsl_matrix_short_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_short_memcpy(new, nativeHandle)
-        return GslShortMatrix(new, features)
+        return GslShortMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_short_free(nativeHandle)
@@ -108,8 +111,9 @@ internal class GslShortMatrix(
 
 internal class GslUShortMatrix(
     override val nativeHandle: CPointer<gsl_matrix_ushort>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<UShort, gsl_matrix_ushort>() {
+    scope: DeferScope
+) : GslMatrix<UShort, gsl_matrix_ushort>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -119,7 +123,7 @@ internal class GslUShortMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslUShortMatrix =
-        GslUShortMatrix(nativeHandle, this.features + features)
+        GslUShortMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): UShort = gsl_matrix_ushort_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -129,7 +133,7 @@ internal class GslUShortMatrix(
     override fun copy(): GslUShortMatrix {
         val new = requireNotNull(gsl_matrix_ushort_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_ushort_memcpy(new, nativeHandle)
-        return GslUShortMatrix(new, features)
+        return GslUShortMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_ushort_free(nativeHandle)
@@ -142,8 +146,9 @@ internal class GslUShortMatrix(
 
 internal class GslLongMatrix(
     override val nativeHandle: CPointer<gsl_matrix_long>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<Long, gsl_matrix_long>() {
+    scope: DeferScope
+) : GslMatrix<Long, gsl_matrix_long>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -153,7 +158,7 @@ internal class GslLongMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslLongMatrix =
-        GslLongMatrix(nativeHandle, this.features + features)
+        GslLongMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): Long = gsl_matrix_long_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -163,7 +168,7 @@ internal class GslLongMatrix(
     override fun copy(): GslLongMatrix {
         val new = requireNotNull(gsl_matrix_long_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_long_memcpy(new, nativeHandle)
-        return GslLongMatrix(new, features)
+        return GslLongMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_long_free(nativeHandle)
@@ -176,8 +181,9 @@ internal class GslLongMatrix(
 
 internal class GslULongMatrix(
     override val nativeHandle: CPointer<gsl_matrix_ulong>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<ULong, gsl_matrix_ulong>() {
+    scope: DeferScope
+) : GslMatrix<ULong, gsl_matrix_ulong>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -187,7 +193,7 @@ internal class GslULongMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslULongMatrix =
-        GslULongMatrix(nativeHandle, this.features + features)
+        GslULongMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): ULong = gsl_matrix_ulong_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -197,7 +203,7 @@ internal class GslULongMatrix(
     override fun copy(): GslULongMatrix {
         val new = requireNotNull(gsl_matrix_ulong_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_ulong_memcpy(new, nativeHandle)
-        return GslULongMatrix(new, features)
+        return GslULongMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_ulong_free(nativeHandle)
@@ -210,8 +216,9 @@ internal class GslULongMatrix(
 
 internal class GslIntMatrix(
     override val nativeHandle: CPointer<gsl_matrix_int>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<Int, gsl_matrix_int>() {
+    scope: DeferScope
+) : GslMatrix<Int, gsl_matrix_int>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -221,7 +228,7 @@ internal class GslIntMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslIntMatrix =
-        GslIntMatrix(nativeHandle, this.features + features)
+        GslIntMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): Int = gsl_matrix_int_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -231,7 +238,7 @@ internal class GslIntMatrix(
     override fun copy(): GslIntMatrix {
         val new = requireNotNull(gsl_matrix_int_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_int_memcpy(new, nativeHandle)
-        return GslIntMatrix(new, features)
+        return GslIntMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_int_free(nativeHandle)
@@ -244,8 +251,9 @@ internal class GslIntMatrix(
 
 internal class GslUIntMatrix(
     override val nativeHandle: CPointer<gsl_matrix_uint>,
-    features: Set<MatrixFeature> = emptySet()
+    features: Set<MatrixFeature> = emptySet(),
-) : GslMatrix<UInt, gsl_matrix_uint>() {
+    scope: DeferScope
+) : GslMatrix<UInt, gsl_matrix_uint>(scope) {
     override val rowNum: Int
         get() = nativeHandle.pointed.size1.toInt()
 
@@ -255,7 +263,7 @@ internal class GslUIntMatrix(
     override val features: Set<MatrixFeature> = features
 
     override fun suggestFeature(vararg features: MatrixFeature): GslUIntMatrix =
-        GslUIntMatrix(nativeHandle, this.features + features)
+        GslUIntMatrix(nativeHandle, this.features + features, scope)
 
     override operator fun get(i: Int, j: Int): UInt = gsl_matrix_uint_get(nativeHandle, i.toULong(), j.toULong())
 
@@ -265,7 +273,7 @@ internal class GslUIntMatrix(
     override fun copy(): GslUIntMatrix {
         val new = requireNotNull(gsl_matrix_uint_alloc(rowNum.toULong(), colNum.toULong()))
         gsl_matrix_uint_memcpy(new, nativeHandle)
-        return GslUIntMatrix(new, features)
+        return GslUIntMatrix(new, features, scope)
     }
 
     override fun close(): Unit = gsl_matrix_uint_free(nativeHandle)

kmath-gsl/src/nativeMain/kotlin/kscience/kmath/gsl/_Vectors.kt

@@ -3,7 +3,8 @@ package kscience.kmath.gsl
 import kotlinx.cinterop.*
 import org.gnu.gsl.*
 
-internal class GslRealVector(override val nativeHandle: CPointer<gsl_vector>) : GslVector<Double, gsl_vector>() {
+internal class GslRealVector(override val nativeHandle: CPointer<gsl_vector>, scope: DeferScope) 
+            : GslVector<Double, gsl_vector>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -13,7 +14,7 @@ internal class GslRealVector(override val nativeHandle: CPointer<gsl_vector>) :
     override fun copy(): GslRealVector {
         val new = requireNotNull(gsl_vector_alloc(size.toULong()))
         gsl_vector_memcpy(new, nativeHandle)
-        return GslRealVector(new)
+        return GslRealVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -24,7 +25,8 @@ internal class GslRealVector(override val nativeHandle: CPointer<gsl_vector>) :
     override fun close(): Unit = gsl_vector_free(nativeHandle)
 }
 
-internal class GslFloatVector(override val nativeHandle: CPointer<gsl_vector_float>) : GslVector<Float, gsl_vector_float>() {
+internal class GslFloatVector(override val nativeHandle: CPointer<gsl_vector_float>, scope: DeferScope) 
+            : GslVector<Float, gsl_vector_float>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -34,7 +36,7 @@ internal class GslFloatVector(override val nativeHandle: CPointer<gsl_vector_flo
     override fun copy(): GslFloatVector {
         val new = requireNotNull(gsl_vector_float_alloc(size.toULong()))
         gsl_vector_float_memcpy(new, nativeHandle)
-        return GslFloatVector(new)
+        return GslFloatVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -45,7 +47,8 @@ internal class GslFloatVector(override val nativeHandle: CPointer<gsl_vector_flo
     override fun close(): Unit = gsl_vector_float_free(nativeHandle)
 }
 
-internal class GslShortVector(override val nativeHandle: CPointer<gsl_vector_short>) : GslVector<Short, gsl_vector_short>() {
+internal class GslShortVector(override val nativeHandle: CPointer<gsl_vector_short>, scope: DeferScope) 
+            : GslVector<Short, gsl_vector_short>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -55,7 +58,7 @@ internal class GslShortVector(override val nativeHandle: CPointer<gsl_vector_sho
     override fun copy(): GslShortVector {
         val new = requireNotNull(gsl_vector_short_alloc(size.toULong()))
         gsl_vector_short_memcpy(new, nativeHandle)
-        return GslShortVector(new)
+        return GslShortVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -66,7 +69,8 @@ internal class GslShortVector(override val nativeHandle: CPointer<gsl_vector_sho
     override fun close(): Unit = gsl_vector_short_free(nativeHandle)
 }
 
-internal class GslUShortVector(override val nativeHandle: CPointer<gsl_vector_ushort>) : GslVector<UShort, gsl_vector_ushort>() {
+internal class GslUShortVector(override val nativeHandle: CPointer<gsl_vector_ushort>, scope: DeferScope) 
+            : GslVector<UShort, gsl_vector_ushort>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -76,7 +80,7 @@ internal class GslUShortVector(override val nativeHandle: CPointer<gsl_vector_us
     override fun copy(): GslUShortVector {
         val new = requireNotNull(gsl_vector_ushort_alloc(size.toULong()))
         gsl_vector_ushort_memcpy(new, nativeHandle)
-        return GslUShortVector(new)
+        return GslUShortVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -87,7 +91,8 @@ internal class GslUShortVector(override val nativeHandle: CPointer<gsl_vector_us
     override fun close(): Unit = gsl_vector_ushort_free(nativeHandle)
 }
 
-internal class GslLongVector(override val nativeHandle: CPointer<gsl_vector_long>) : GslVector<Long, gsl_vector_long>() {
+internal class GslLongVector(override val nativeHandle: CPointer<gsl_vector_long>, scope: DeferScope) 
+            : GslVector<Long, gsl_vector_long>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -97,7 +102,7 @@ internal class GslLongVector(override val nativeHandle: CPointer<gsl_vector_long
     override fun copy(): GslLongVector {
         val new = requireNotNull(gsl_vector_long_alloc(size.toULong()))
         gsl_vector_long_memcpy(new, nativeHandle)
-        return GslLongVector(new)
+        return GslLongVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -108,7 +113,8 @@ internal class GslLongVector(override val nativeHandle: CPointer<gsl_vector_long
     override fun close(): Unit = gsl_vector_long_free(nativeHandle)
 }
 
-internal class GslULongVector(override val nativeHandle: CPointer<gsl_vector_ulong>) : GslVector<ULong, gsl_vector_ulong>() {
+internal class GslULongVector(override val nativeHandle: CPointer<gsl_vector_ulong>, scope: DeferScope) 
+            : GslVector<ULong, gsl_vector_ulong>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -118,7 +124,7 @@ internal class GslULongVector(override val nativeHandle: CPointer<gsl_vector_ulo
     override fun copy(): GslULongVector {
         val new = requireNotNull(gsl_vector_ulong_alloc(size.toULong()))
         gsl_vector_ulong_memcpy(new, nativeHandle)
-        return GslULongVector(new)
+        return GslULongVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -129,7 +135,8 @@ internal class GslULongVector(override val nativeHandle: CPointer<gsl_vector_ulo
     override fun close(): Unit = gsl_vector_ulong_free(nativeHandle)
 }
 
-internal class GslIntVector(override val nativeHandle: CPointer<gsl_vector_int>) : GslVector<Int, gsl_vector_int>() {
+internal class GslIntVector(override val nativeHandle: CPointer<gsl_vector_int>, scope: DeferScope) 
+            : GslVector<Int, gsl_vector_int>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -139,7 +146,7 @@ internal class GslIntVector(override val nativeHandle: CPointer<gsl_vector_int>)
     override fun copy(): GslIntVector {
         val new = requireNotNull(gsl_vector_int_alloc(size.toULong()))
         gsl_vector_int_memcpy(new, nativeHandle)
-        return GslIntVector(new)
+        return GslIntVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {
@@ -150,7 +157,8 @@ internal class GslIntVector(override val nativeHandle: CPointer<gsl_vector_int>)
     override fun close(): Unit = gsl_vector_int_free(nativeHandle)
 }
 
-internal class GslUIntVector(override val nativeHandle: CPointer<gsl_vector_uint>) : GslVector<UInt, gsl_vector_uint>() {
+internal class GslUIntVector(override val nativeHandle: CPointer<gsl_vector_uint>, scope: DeferScope) 
+            : GslVector<UInt, gsl_vector_uint>(scope) {
     override val size: Int
         get() = nativeHandle.pointed.size.toInt()
 
@@ -160,7 +168,7 @@ internal class GslUIntVector(override val nativeHandle: CPointer<gsl_vector_uint
     override fun copy(): GslUIntVector {
         val new = requireNotNull(gsl_vector_uint_alloc(size.toULong()))
         gsl_vector_uint_memcpy(new, nativeHandle)
-        return GslUIntVector(new)
+        return GslUIntVector(new, scope)
     }
 
     override fun equals(other: Any?): Boolean {

kmath-gsl/src/nativeTest/kotlin/RealTest.kt

@@ -1,5 +1,6 @@
 package kscience.kmath.gsl
 
+import kotlinx.cinterop.memScoped
 import kscience.kmath.linear.RealMatrixContext
 import kscience.kmath.operations.invoke
 import kscience.kmath.structures.RealBuffer
@@ -11,36 +12,37 @@ import kotlin.test.assertTrue
 
 internal class RealTest {
     @Test
-    fun testScale() = GslRealMatrixContext {
+    fun testScale() = memScoped {
-        val ma = GslRealMatrixContext.produce(10, 10) { _, _ -> 0.1 }
+        (GslRealMatrixContext(this)) {
-        val mb = (ma * 20.0)
+            val ma = produce(10, 10) { _, _ -> 0.1 }
-        assertEquals(mb[0, 1], 2.0)
+            val mb = (ma * 20.0)
-        mb.close()
+            assertEquals(mb[0, 1], 2.0)
-        ma.close()
+        }
     }
 
     @Test
-    fun testDotOfMatrixAndVector() {
+    fun testDotOfMatrixAndVector() = memScoped {
-        val ma = GslRealMatrixContext.produce(2, 2) { _, _ -> 100.0 }
+        (GslRealMatrixContext(this)) {
-        val vb = RealBuffer(2) { 0.1 }
+            val ma = produce(2, 2) { _, _ -> 100.0 }
-        val res1 = GslRealMatrixContext { ma dot vb }
+            val vb = RealBuffer(2) { 0.1 }
-        val res2 = RealMatrixContext { ma dot vb }
+            val res1 = ma dot vb
-        println(res1.asSequence().toList())
+            val res2 = RealMatrixContext { ma dot vb }
-        println(res2.asSequence().toList())
+            println(res1.asSequence().toList())
-        assertTrue(res1.contentEquals(res2))
+            println(res2.asSequence().toList())
-        res1.close()
+            assertTrue(res1.contentEquals(res2))
+        }
     }
 
     @Test
-    fun testDotOfMatrixAndMatrix() {
+    fun testDotOfMatrixAndMatrix() = memScoped {
-        val ma = GslRealMatrixContext.produce(2, 2) { _, _ -> 100.0 }
+        (GslRealMatrixContext(this)) {
-        val mb = GslRealMatrixContext.produce(2, 2) { _, _ -> 100.0 }
+            val ma = produce(2, 2) { _, _ -> 100.0 }
-        val res1 = GslRealMatrixContext { ma dot mb }
+            val mb = produce(2, 2) { _, _ -> 100.0 }
-        val res2 = RealMatrixContext { ma dot mb }
+            val res1 = ma dot mb
-        println(res1.rows.asIterable().map { it.asSequence() }.flatMap(Sequence<*>::toList))
+            val res2 = RealMatrixContext { ma dot mb }
-        println(res2.rows.asIterable().map { it.asSequence() }.flatMap(Sequence<*>::toList))
+            println(res1.rows.asIterable().map { it.asSequence() }.flatMap(Sequence<*>::toList))
-        assertEquals(res1, res2)
+            println(res2.rows.asIterable().map { it.asSequence() }.flatMap(Sequence<*>::toList))
-        ma.close()
+            assertEquals(res1, res2)
-        mb.close()
+        }
     }
 }