Merge pull request #381 from mipt-npm/commandertvis/dokka

Build infrastructure changes

.github/workflows/build.yml

@@ -2,8 +2,10 @@ name: Gradle build
 
 on:
   push:
+    branches:
+      - dev
+      - master
   pull_request:
-    types: [opened, edited]
 
 jobs:
   build:
@@ -21,9 +23,6 @@ jobs:
           graalvm: 21.1.0
           java: java11
           arch: amd64
-      - name: Add msys to path
-        if: matrix.os == 'windows-latest'
-        run: SETX PATH "%PATH%;C:\msys64\mingw64\bin"
       - name: Cache gradle
         uses: actions/cache@v2
         with:

.github/workflows/pages.yml

@@ -2,23 +2,26 @@ name: Dokka publication
 
 on:
   push:
-    branches:
-      - master
+    branches: [ master ]
 
 jobs:
   build:
     runs-on: ubuntu-20.04
     steps:
-      - name: Checkout the repo
-        uses: actions/checkout@v2
-      - name: Set up JDK 11
-        uses: actions/setup-java@v1
+      - uses: actions/checkout@v2
+      - uses: DeLaGuardo/setup-graalvm@4.0
         with:
-          java-version: 11
-      - name: Build
-        run: ./gradlew dokkaHtmlMultiModule --no-daemon --no-parallel --stacktrace
-      - name: Deploy to GitHub Pages
-        uses: JamesIves/github-pages-deploy-action@4.1.0
+          graalvm: 21.1.0
+          java: java11
+          arch: amd64
+      - uses: actions/cache@v2
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('*.gradle.kts') }}
+          restore-keys: |
+            ${{ runner.os }}-gradle-
+      - run: ./gradlew dokkaHtmlMultiModule --no-daemon --no-parallel --stacktrace
+      - uses: JamesIves/github-pages-deploy-action@4.1.0
         with:
           branch: gh-pages
           folder: build/dokka/htmlMultiModule

.github/workflows/publish.yml

@@ -3,8 +3,7 @@ name: Gradle publish
 on:
   workflow_dispatch:
   release:
-    types:
-      - created
+    types: [ created ]
 
 jobs:
   publish:
@@ -23,13 +22,12 @@ jobs:
           graalvm: 21.1.0
           java: java11
           arch: amd64
-      - name: Add msys to path
-        if: matrix.os == 'windows-latest'
-        run: SETX PATH "%PATH%;C:\msys64\mingw64\bin"
       - name: Cache gradle
         uses: actions/cache@v2
         with:
-          path: ~/.gradle/caches
+          path: |
+            ~/.gradle/caches
+            ~/.gradle/wrapper
           key: ${{ runner.os }}-gradle-${{ hashFiles('*.gradle.kts') }}
           restore-keys: |
             ${{ runner.os }}-gradle-
@@ -43,19 +41,12 @@ jobs:
       - name: Publish Windows Artifacts
         if: matrix.os == 'windows-latest'
         run: >
-          ./gradlew release --no-daemon
-          -Ppublishing.enabled=true
-          -Ppublishing.github.user=${{ secrets.PUBLISHING_GITHUB_USER }}
-          -Ppublishing.github.token=${{ secrets.PUBLISHING_GITHUB_TOKEN }}
+          ./gradlew release --no-daemon -Ppublishing.enabled=true
           -Ppublishing.space.user=${{ secrets.PUBLISHING_SPACE_USER }}
           -Ppublishing.space.token=${{ secrets.PUBLISHING_SPACE_TOKEN }}
       - name: Publish Mac Artifacts
         if: matrix.os == 'macOS-latest'
         run: >
-          ./gradlew release --no-daemon
-          -Ppublishing.enabled=true
-          -Ppublishing.platform=macosX64
-          -Ppublishing.github.user=${{ secrets.PUBLISHING_GITHUB_USER }}
-          -Ppublishing.github.token=${{ secrets.PUBLISHING_GITHUB_TOKEN }}
+          ./gradlew release --no-daemon -Ppublishing.enabled=true -Ppublishing.platform=macosX64
           -Ppublishing.space.user=${{ secrets.PUBLISHING_SPACE_USER }}
           -Ppublishing.space.token=${{ secrets.PUBLISHING_SPACE_TOKEN }}

build.gradle.kts

@@ -1,3 +1,5 @@
+import java.net.URL
+
 plugins {
     id("ru.mipt.npm.gradle.project")
     kotlin("jupyter.api") apply false
@@ -7,9 +9,11 @@ allprojects {
     repositories {
         maven("https://clojars.org/repo")
         maven("https://jitpack.io")
+
         maven("http://logicrunch.research.it.uu.se/maven") {
             isAllowInsecureProtocol = true
         }
+
         maven("https://oss.sonatype.org/content/repositories/snapshots")
         mavenCentral()
     }
@@ -23,16 +27,30 @@ subprojects {
 
     afterEvaluate {
         tasks.withType<org.jetbrains.dokka.gradle.DokkaTaskPartial> {
-            dependsOn(tasks.getByName("assemble"))
+            dependsOn(tasks["assemble"])
 
             dokkaSourceSets.all {
-                val readmeFile = File(this@subprojects.projectDir, "README.md")
-                if (readmeFile.exists()) includes.from(readmeFile.absolutePath)
-                externalDocumentationLink("https://ejml.org/javadoc/")
+                val readmeFile = this@subprojects.projectDir.resolve("README.md")
+                if (readmeFile.exists()) includes.from(readmeFile)
+                val kotlinDirPath = "src/$name/kotlin"
+                val kotlinDir = file(kotlinDirPath)
+
+                if (kotlinDir.exists()) sourceLink {
+                    localDirectory.set(kotlinDir)
+
+                    remoteUrl.set(
+                        URL("https://github.com/mipt-npm/${rootProject.name}/tree/master/${this@subprojects.name}/$kotlinDirPath")
+                    )
+                }
+
                 externalDocumentationLink("https://commons.apache.org/proper/commons-math/javadocs/api-3.6.1/")
                 externalDocumentationLink("https://deeplearning4j.org/api/latest/")
                 externalDocumentationLink("https://axelclk.bitbucket.io/symja/javadoc/")
-                externalDocumentationLink("https://kotlin.github.io/kotlinx.coroutines/kotlinx-coroutines-core/")
+
+                externalDocumentationLink(
+                    "https://kotlin.github.io/kotlinx.coroutines/kotlinx-coroutines-core/",
+                    "https://kotlin.github.io/kotlinx.coroutines/package-list",
+                )
 
                 externalDocumentationLink(
                     "https://breandan.net/kotlingrad/kotlingrad/",
@@ -43,16 +61,12 @@ subprojects {
     }
 }
 
-readme {
-    readmeTemplate = file("docs/templates/README-TEMPLATE.md")
-}
+readme.readmeTemplate = file("docs/templates/README-TEMPLATE.md")
 
 ksciencePublish {
-    github("kmath")
-    space()
-    sonatype()
+    vcs("https://github.com/mipt-npm/kmath")
+    space(publish = true)
+    sonatype(publish = true)
 }
 
-apiValidation {
-    nonPublicMarkers.add("space.kscience.kmath.misc.UnstableKMathAPI")
-}
+apiValidation.nonPublicMarkers.add("space.kscience.kmath.misc.UnstableKMathAPI")

buildSrc/build.gradle.kts

@@ -11,7 +11,7 @@ repositories {
 
 dependencies {
     api("org.jetbrains.kotlinx:kotlinx-serialization-json:1.1.0")
-    api("ru.mipt.npm:gradle-tools:0.10.0")
+    api("ru.mipt.npm:gradle-tools:0.10.1")
     api("org.jetbrains.kotlinx:kotlinx-benchmark-plugin:0.3.1")
 }
 

gradle.properties

@@ -7,7 +7,6 @@ kotlin.code.style=official
 kotlin.mpp.enableGranularSourceSetsMetadata=true
 kotlin.mpp.stability.nowarn=true
 kotlin.native.enableDependencyPropagation=false
-kotlin.parallel.tasks.in.project=true
 org.gradle.configureondemand=true
 org.gradle.jvmargs=-XX:MaxMetaspaceSize=2G
 org.gradle.parallel=true

kmath-core/README.md

@@ -10,7 +10,7 @@ The core interfaces of KMath.
 objects to the expression by providing a context. Expressions can be used for a wide variety of purposes from high 
 performance calculations to code generation.
  - [domains](src/commonMain/kotlin/space/kscience/kmath/domains) : Domains
- - [autodif](src/commonMain/kotlin/space/kscience/kmath/expressions/SimpleAutoDiff.kt) : Automatic differentiation
+ - [autodiff](src/commonMain/kotlin/space/kscience/kmath/expressions/SimpleAutoDiff.kt) : Automatic differentiation
 
 
 ## Artifact:

kmath-core/build.gradle.kts

@@ -19,51 +19,42 @@ readme {
 
     feature(
         id = "algebras",
-        description = """
-            Algebraic structures like rings, spaces and fields.
-        """.trimIndent(),
-        ref = "src/commonMain/kotlin/space/kscience/kmath/operations/Algebra.kt"
-    )
+        ref = "src/commonMain/kotlin/space/kscience/kmath/operations/Algebra.kt",
+    ) { "Algebraic structures like rings, spaces and fields." }
 
     feature(
         id = "nd",
-        description = "Many-dimensional structures and operations on them.",
-        ref = "src/commonMain/kotlin/space/kscience/kmath/structures/StructureND.kt"
-    )
+        ref = "src/commonMain/kotlin/space/kscience/kmath/structures/StructureND.kt",
+    ) { "Many-dimensional structures and operations on them." }
 
     feature(
         id = "linear",
-        description = """
-            Basic linear algebra operations (sums, products, etc.), backed by the `Space` API. Advanced linear algebra operations like matrix inversion and LU decomposition.
-        """.trimIndent(),
-        ref = "src/commonMain/kotlin/space/kscience/kmath/operations/Algebra.kt"
-    )
+        ref = "src/commonMain/kotlin/space/kscience/kmath/operations/Algebra.kt",
+    ) { "Basic linear algebra operations (sums, products, etc.), backed by the `Space` API. Advanced linear algebra operations like matrix inversion and LU decomposition." }
 
     feature(
         id = "buffers",
-        description = "One-dimensional structure",
-        ref = "src/commonMain/kotlin/space/kscience/kmath/structures/Buffers.kt"
-    )
+        ref = "src/commonMain/kotlin/space/kscience/kmath/structures/Buffers.kt",
+    ) { "One-dimensional structure" }
 
     feature(
         id = "expressions",
-        description = """
+        ref = "src/commonMain/kotlin/space/kscience/kmath/expressions"
+    ) {
+        """
             By writing a single mathematical expression once, users will be able to apply different types of 
             objects to the expression by providing a context. Expressions can be used for a wide variety of purposes from high 
             performance calculations to code generation.
-        """.trimIndent(),
-        ref = "src/commonMain/kotlin/space/kscience/kmath/expressions"
-    )
+        """.trimIndent()
+    }
 
     feature(
         id = "domains",
-        description = "Domains",
-        ref = "src/commonMain/kotlin/space/kscience/kmath/domains"
-    )
+        ref = "src/commonMain/kotlin/space/kscience/kmath/domains",
+    ) { "Domains" }
 
     feature(
-        id = "autodif",
-        description = "Automatic differentiation",
+        id = "autodiff",
         ref = "src/commonMain/kotlin/space/kscience/kmath/expressions/SimpleAutoDiff.kt"
-    )
+    ) { "Automatic differentiation" }
 }

kmath-coroutines/build.gradle.kts

@@ -1,6 +1,7 @@
 plugins {
     kotlin("multiplatform")
     id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 kotlin.sourceSets {

kmath-ejml/build.gradle.kts

@@ -6,10 +6,10 @@ plugins {
 }
 
 dependencies {
-    api("org.ejml:ejml-ddense:0.40")
-    api("org.ejml:ejml-fdense:0.40")
-    api("org.ejml:ejml-dsparse:0.40")
-    api("org.ejml:ejml-fsparse:0.40")
+    api("org.ejml:ejml-ddense:0.41")
+    api("org.ejml:ejml-fdense:0.41")
+    api("org.ejml:ejml-dsparse:0.41")
+    api("org.ejml:ejml-fsparse:0.41")
     api(project(":kmath-core"))
 }
 

kmath-for-real/build.gradle.kts

@@ -1,6 +1,7 @@
 plugins {
     kotlin("multiplatform")
     id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 kotlin.sourceSets.commonMain {

kmath-functions/build.gradle.kts

@@ -1,6 +1,7 @@
 plugins {
     kotlin("multiplatform")
     id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 description = "Functions, integration and interpolation"

kmath-geometry/build.gradle.kts

@@ -1,6 +1,7 @@
 plugins {
     kotlin("multiplatform")
     id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 kotlin.sourceSets.commonMain {

kmath-histograms/build.gradle.kts

@@ -1,6 +1,7 @@
 plugins {
     kotlin("multiplatform")
     id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 kscience {

kmath-stat/build.gradle.kts

@@ -1,6 +1,7 @@
 plugins {
     kotlin("multiplatform")
     id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 kscience {

kmath-tensors/build.gradle.kts

@@ -1,11 +1,14 @@
 plugins {
-    id("ru.mipt.npm.gradle.mpp")
+    kotlin("multiplatform")
+    id("ru.mipt.npm.gradle.common")
+    id("ru.mipt.npm.gradle.native")
 }
 
 kotlin.sourceSets {
     all {
         languageSettings.useExperimentalAnnotation("space.kscience.kmath.misc.UnstableKMathAPI")
     }
+
     commonMain {
         dependencies {
             api(project(":kmath-core"))
@@ -14,10 +17,6 @@ kotlin.sourceSets {
     }
 }
 
-tasks.dokkaHtml {
-    dependsOn(tasks.build)
-}
-
 readme {
     maturity = ru.mipt.npm.gradle.Maturity.PROTOTYPE
     propertyByTemplate("artifact", rootProject.file("docs/templates/ARTIFACT-TEMPLATE.md"))

settings.gradle.kts

@@ -5,8 +5,8 @@ pluginManagement {
         gradlePluginPortal()
     }
 
-    val toolsVersion = "0.10.0"
-    val kotlinVersion = "1.5.20"
+    val toolsVersion = "0.10.1"
+    val kotlinVersion = "1.5.21"
 
     plugins {
         id("ru.mipt.npm.gradle.project") version toolsVersion
@@ -16,7 +16,7 @@ pluginManagement {
         kotlin("jvm") version kotlinVersion
         kotlin("plugin.allopen") version kotlinVersion
         id("org.jetbrains.kotlinx.benchmark") version "0.3.1"
-        kotlin("jupyter.api") version "0.10.0-25"
+        kotlin("jupyter.api") version "0.10.0-131-1"
     }
 }