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v0.3.0-dev-9 #324

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altavir merged 265 commits from dev into master 2021-05-08 17:16:29 +03:00
Conversation 0 Commits 265 Files Changed 182 +20 -15
5 changed files with 20 additions and 15 deletions
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4
kmath-tensors/src/commonMain/kotlin/space/kscience/kmath/tensors/LinearOpsTensorAlgebra.kt
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@ -1,7 +1,7 @@
package space.kscience.kmath.tensors
public interface LinearOpsTensorAlgebra<T, TensorType : TensorStructure<T>, IndexTensorType: TensorStructure<Int>> :
public interface LinearOpsTensorAlgebra<T, TensorType : TensorStructure<T>, IndexTensorType : TensorStructure<Int>> :
TensorPartialDivisionAlgebra<T, TensorType> {
//https://pytorch.org/docs/stable/linalg.html#torch.linalg.det
@ -26,6 +26,6 @@ public interface LinearOpsTensorAlgebra<T, TensorType : TensorStructure<T>, Inde
public fun TensorType.svd(): Triple<TensorType, TensorType, TensorType>
//https://pytorch.org/docs/stable/generated/torch.symeig.html
public fun TensorType.symEig(eigenvectors: Boolean = true): Pair<TensorType, TensorType>
public fun TensorType.symEig(): Pair<TensorType, TensorType>
}

17
kmath-tensors/src/commonMain/kotlin/space/kscience/kmath/tensors/core/DoubleLinearOpsTensorAlgebra.kt
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@ -94,8 +94,10 @@ public class DoubleLinearOpsTensorAlgebra :
return qTensor to rTensor
}
override fun DoubleTensor.svd(): Triple<DoubleTensor, DoubleTensor, DoubleTensor> =
svd(epsilon = 1e-10)
override fun DoubleTensor.svd(): Triple<DoubleTensor, DoubleTensor, DoubleTensor> {
public fun DoubleTensor.svd(epsilon: Double): Triple<DoubleTensor, DoubleTensor, DoubleTensor> {
val size = this.linearStructure.dim
val commonShape = this.shape.sliceArray(0 until size - 2)
val (n, m) = this.shape.sliceArray(size - 2 until size)
@ -110,17 +112,20 @@ public class DoubleLinearOpsTensorAlgebra :
matrix.shape,
matrix.buffer.array().slice(matrix.bufferStart until matrix.bufferStart + size).toDoubleArray()
)
svdHelper(curMatrix, USV, m, n)
svdHelper(curMatrix, USV, m, n, epsilon)
}
return Triple(resU.transpose(), resS, resV.transpose())
}
override fun DoubleTensor.symEig(): Pair<DoubleTensor, DoubleTensor> =
symEig(epsilon = 1e-15)
//http://hua-zhou.github.io/teaching/biostatm280-2017spring/slides/16-eigsvd/eigsvd.html
override fun DoubleTensor.symEig(eigenvectors: Boolean): Pair<DoubleTensor, DoubleTensor> {
checkSymmetric(this)
val (u, s, v) = this.svd()
public fun DoubleTensor.symEig(epsilon: Double): Pair<DoubleTensor, DoubleTensor> {
checkSymmetric(this, epsilon)
val (u, s, v) = this.svd(epsilon)
val shp = s.shape + intArrayOf(1)
val utv = (u.transpose() dot v).map { if (abs(it) < 0.99) 0.0 else sign(it) }
val utv = (u.transpose() dot v).map { if (abs(it) < 0.9) 0.0 else sign(it) }
val eig = (utv dot s.view(shp)).view(s.shape)
return Pair(eig, v)
}

6
kmath-tensors/src/commonMain/kotlin/space/kscience/kmath/tensors/core/checks.kt
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@ -58,7 +58,7 @@ internal inline fun <T, TensorType : TensorStructure<T>,
}
}
internal inline fun DoubleTensorAlgebra.checkSymmetric(tensor: DoubleTensor): Unit =
check(tensor.eq(tensor.transpose())){
"Tensor is not symmetric about the last 2 dimensions"
internal inline fun DoubleTensorAlgebra.checkSymmetric(tensor: DoubleTensor, epsilon: Double = 1e-6): Unit =
check(tensor.eq(tensor.transpose(), epsilon)) {
"Tensor is not symmetric about the last 2 dimensions at precision $epsilon"
}

6
kmath-tensors/src/commonMain/kotlin/space/kscience/kmath/tensors/core/linutils.kt
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@ -246,7 +246,7 @@ internal inline fun DoubleLinearOpsTensorAlgebra.svd1d(a: DoubleTensor, epsilon:
internal inline fun DoubleLinearOpsTensorAlgebra.svdHelper(
matrix: DoubleTensor,
USV: Pair<BufferedTensor<Double>, Pair<BufferedTensor<Double>, BufferedTensor<Double>>>,
m: Int, n: Int
m: Int, n: Int, epsilon: Double
): Unit {
val res = ArrayList<Triple<Double, DoubleTensor, DoubleTensor>>(0)
val (matrixU, SV) = USV
@ -267,12 +267,12 @@ internal inline fun DoubleLinearOpsTensorAlgebra.svdHelper(
var u: DoubleTensor
var norm: Double
if (n > m) {
v = svd1d(a)
v = svd1d(a, epsilon)
u = matrix.dot(v)
norm = DoubleAnalyticTensorAlgebra { (u dot u).sqrt().value() }
u = u.times(1.0 / norm)
} else {
u = svd1d(a)
u = svd1d(a, epsilon)
v = matrix.transpose(0, 1).dot(u)
norm = DoubleAnalyticTensorAlgebra { (v dot v).sqrt().value() }
v = v.times(1.0 / norm)

2
kmath-tensors/src/commonTest/kotlin/space/kscience/kmath/tensors/core/TestDoubleLinearOpsAlgebra.kt
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@ -143,7 +143,7 @@ class TestDoubleLinearOpsTensorAlgebra {
val tensorSigma = tensor + tensor.transpose()
val (tensorS, tensorV) = tensorSigma.symEig()
val tensorSigmaCalc = tensorV dot (diagonalEmbedding(tensorS) dot tensorV.transpose())
assertTrue(tensorSigma.eq(tensorSigmaCalc, 0.01))
assertTrue(tensorSigma.eq(tensorSigmaCalc))
}