v0.3.0-dev-9 #324
@ -35,6 +35,7 @@
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- `contentEquals` from Buffer. It moved to the companion.
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- `contentEquals` from Buffer. It moved to the companion.
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- MSTExpression
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- MSTExpression
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- Expression algebra builders
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- Expression algebra builders
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- Comples and Quaternion no longer are elements.
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### Fixed
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### Fixed
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- Ring inherits RingOperations, not GroupOperations
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- Ring inherits RingOperations, not GroupOperations
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@ -15,7 +15,7 @@ allprojects {
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}
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}
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group = "space.kscience"
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group = "space.kscience"
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version = "0.3.0-dev-7"
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version = "0.3.0-dev-8"
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}
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}
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subprojects {
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subprojects {
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@ -6,8 +6,8 @@
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package space.kscience.kmath.tensors
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package space.kscience.kmath.tensors
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import space.kscience.kmath.operations.invoke
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import space.kscience.kmath.operations.invoke
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import space.kscience.kmath.tensors.core.DoubleTensor
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import space.kscience.kmath.tensors.core.BroadcastDoubleTensorAlgebra
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import space.kscience.kmath.tensors.core.BroadcastDoubleTensorAlgebra
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import space.kscience.kmath.tensors.core.DoubleTensor
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import space.kscience.kmath.tensors.core.DoubleTensorAlgebra
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import space.kscience.kmath.tensors.core.DoubleTensorAlgebra
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import space.kscience.kmath.tensors.core.toDoubleArray
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import space.kscience.kmath.tensors.core.toDoubleArray
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import kotlin.math.sqrt
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import kotlin.math.sqrt
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@ -106,6 +106,7 @@ fun accuracy(yPred: DoubleTensor, yTrue: DoubleTensor): Double {
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}
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}
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// neural network class
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// neural network class
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@OptIn(ExperimentalStdlibApi::class)
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class NeuralNetwork(private val layers: List<Layer>) {
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class NeuralNetwork(private val layers: List<Layer>) {
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private fun softMaxLoss(yPred: DoubleTensor, yTrue: DoubleTensor): DoubleTensor = BroadcastDoubleTensorAlgebra {
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private fun softMaxLoss(yPred: DoubleTensor, yTrue: DoubleTensor): DoubleTensor = BroadcastDoubleTensorAlgebra {
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@ -120,7 +121,7 @@ class NeuralNetwork(private val layers: List<Layer>) {
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(-onesForAnswers + softmaxValue) / (yPred.shape[0].toDouble())
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(-onesForAnswers + softmaxValue) / (yPred.shape[0].toDouble())
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}
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}
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@OptIn(ExperimentalStdlibApi::class)
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private fun forward(x: DoubleTensor): List<DoubleTensor> {
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private fun forward(x: DoubleTensor): List<DoubleTensor> {
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var input = x
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var input = x
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@ -133,7 +134,6 @@ class NeuralNetwork(private val layers: List<Layer>) {
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}
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}
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}
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}
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@OptIn(ExperimentalStdlibApi::class)
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private fun train(xTrain: DoubleTensor, yTrain: DoubleTensor) {
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private fun train(xTrain: DoubleTensor, yTrain: DoubleTensor) {
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val layerInputs = buildList {
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val layerInputs = buildList {
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add(xTrain)
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add(xTrain)
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@ -180,7 +180,7 @@ fun main() {
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val features = 5
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val features = 5
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val sampleSize = 250
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val sampleSize = 250
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val trainSize = 180
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val trainSize = 180
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val testSize = sampleSize - trainSize
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//val testSize = sampleSize - trainSize
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// take sample of features from normal distribution
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// take sample of features from normal distribution
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val x = randomNormal(intArrayOf(sampleSize, features), seed) * 2.5
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val x = randomNormal(intArrayOf(sampleSize, features), seed) * 2.5
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@ -48,7 +48,7 @@ fun main() {
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// inverse Sigma matrix can be restored from singular values with diagonalEmbedding function
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// inverse Sigma matrix can be restored from singular values with diagonalEmbedding function
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val sigma = diagonalEmbedding(singValues.map{ x -> if (abs(x) < 1e-3) 0.0 else 1.0/x })
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val sigma = diagonalEmbedding(singValues.map{ if (abs(it) < 1e-3) 0.0 else 1.0/it })
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val alphaOLS = v dot sigma dot u.transpose() dot y
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val alphaOLS = v dot sigma dot u.transpose() dot y
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println("Estimated alpha:\n" +
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println("Estimated alpha:\n" +
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@ -9,7 +9,10 @@ import space.kscience.kmath.memory.MemoryReader
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import space.kscience.kmath.memory.MemorySpec
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import space.kscience.kmath.memory.MemorySpec
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import space.kscience.kmath.memory.MemoryWriter
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import space.kscience.kmath.memory.MemoryWriter
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import space.kscience.kmath.misc.UnstableKMathAPI
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import space.kscience.kmath.misc.UnstableKMathAPI
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import space.kscience.kmath.operations.*
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import space.kscience.kmath.operations.ExtendedField
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import space.kscience.kmath.operations.Norm
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import space.kscience.kmath.operations.NumbersAddOperations
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import space.kscience.kmath.operations.ScaleOperations
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import space.kscience.kmath.structures.Buffer
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import space.kscience.kmath.structures.Buffer
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import space.kscience.kmath.structures.MemoryBuffer
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import space.kscience.kmath.structures.MemoryBuffer
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import space.kscience.kmath.structures.MutableBuffer
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import space.kscience.kmath.structures.MutableBuffer
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@ -180,12 +183,10 @@ public object ComplexField : ExtendedField<Complex>, Norm<Complex, Complex>, Num
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* @property im The imaginary part.
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* @property im The imaginary part.
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*/
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*/
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@OptIn(UnstableKMathAPI::class)
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@OptIn(UnstableKMathAPI::class)
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public data class Complex(val re: Double, val im: Double) : FieldElement<Complex, ComplexField> {
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public data class Complex(val re: Double, val im: Double) {
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public constructor(re: Number, im: Number) : this(re.toDouble(), im.toDouble())
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public constructor(re: Number, im: Number) : this(re.toDouble(), im.toDouble())
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public constructor(re: Number) : this(re.toDouble(), 0.0)
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public constructor(re: Number) : this(re.toDouble(), 0.0)
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public override val context: ComplexField get() = ComplexField
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public override fun toString(): String = "($re + i*$im)"
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public override fun toString(): String = "($re + i*$im)"
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public companion object : MemorySpec<Complex> {
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public companion object : MemorySpec<Complex> {
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@ -27,9 +27,11 @@ public val Quaternion.conjugate: Quaternion
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*/
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*/
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public val Quaternion.reciprocal: Quaternion
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public val Quaternion.reciprocal: Quaternion
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get() {
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get() {
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val n = QuaternionField { norm(this@reciprocal) }
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QuaternionField {
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val n = norm(this@reciprocal)
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return conjugate / (n * n)
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return conjugate / (n * n)
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}
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}
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}
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/**
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/**
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* Absolute value of the quaternion.
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* Absolute value of the quaternion.
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@ -198,7 +200,7 @@ public object QuaternionField : Field<Quaternion>, Norm<Quaternion, Quaternion>,
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@OptIn(UnstableKMathAPI::class)
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@OptIn(UnstableKMathAPI::class)
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public data class Quaternion(
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public data class Quaternion(
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val w: Double, val x: Double, val y: Double, val z: Double,
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val w: Double, val x: Double, val y: Double, val z: Double,
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) : FieldElement<Quaternion, QuaternionField> {
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) {
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public constructor(w: Number, x: Number, y: Number, z: Number) : this(
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public constructor(w: Number, x: Number, y: Number, z: Number) : this(
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w.toDouble(),
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w.toDouble(),
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x.toDouble(),
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x.toDouble(),
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@ -219,8 +221,6 @@ public data class Quaternion(
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require(!z.isNaN()) { "x-component of quaternion is not-a-number" }
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require(!z.isNaN()) { "x-component of quaternion is not-a-number" }
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}
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}
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public override val context: QuaternionField get() = QuaternionField
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/**
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/**
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* Returns a string representation of this quaternion.
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* Returns a string representation of this quaternion.
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*/
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*/
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@ -5,15 +5,14 @@
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package space.kscience.kmath.stat
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package space.kscience.kmath.stat
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import kotlinx.coroutines.GlobalScope
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import kotlinx.coroutines.runBlocking
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import kotlinx.coroutines.launch
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import org.junit.jupiter.api.Assertions
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import org.junit.jupiter.api.Assertions
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import org.junit.jupiter.api.Test
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import org.junit.jupiter.api.Test
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import space.kscience.kmath.samplers.GaussianSampler
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import space.kscience.kmath.samplers.GaussianSampler
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internal class CommonsDistributionsTest {
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internal class CommonsDistributionsTest {
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@Test
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@Test
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fun testNormalDistributionSuspend() = GlobalScope.launch {
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fun testNormalDistributionSuspend() = runBlocking {
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val distribution = GaussianSampler(7.0, 2.0)
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val distribution = GaussianSampler(7.0, 2.0)
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val generator = RandomGenerator.default(1)
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val generator = RandomGenerator.default(1)
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val sample = distribution.sample(generator).nextBuffer(1000)
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val sample = distribution.sample(generator).nextBuffer(1000)
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Block a user