Refactor/ndalgebra #197
@ -15,9 +15,9 @@ internal class ViktorBenchmark {
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final val n: Int = 100
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final val n: Int = 100
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// automatically build context most suited for given type.
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// automatically build context most suited for given type.
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final val autoField: BufferedNDField<Double, RealField> = NDAlgebra.auto(RealField, dim, dim)
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final val autoField: NDField<Double, RealField> = NDAlgebra.auto(RealField, dim, dim)
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final val realField: RealNDField = NDAlgebra.real(dim, dim)
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final val realField: RealNDField = NDAlgebra.real(dim, dim)
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final val viktorField: ViktorNDField = ViktorNDField(intArrayOf(dim, dim))
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final val viktorField: ViktorNDField = ViktorNDField(dim, dim)
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@Benchmark
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@Benchmark
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fun automaticFieldAddition() {
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fun automaticFieldAddition() {
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@ -27,6 +27,14 @@ internal class ViktorBenchmark {
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}
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}
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}
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}
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@Benchmark
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fun realFieldAddition() {
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realField {
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var res: NDStructure<Double> = one
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repeat(n) { res += one }
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}
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}
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@Benchmark
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@Benchmark
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fun viktorFieldAddition() {
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fun viktorFieldAddition() {
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viktorField {
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viktorField {
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@ -41,22 +49,4 @@ internal class ViktorBenchmark {
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var res = one
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var res = one
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repeat(n) { res = res + one }
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repeat(n) { res = res + one }
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}
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}
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@Benchmark
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fun realFieldLog() {
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realField {
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val fortyTwo = produce { 42.0 }
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var res = one
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repeat(n) { res = ln(fortyTwo) }
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}
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}
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@Benchmark
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fun rawViktorLog() {
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val fortyTwo = F64Array.full(dim, dim, init = 42.0)
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var res: F64Array
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repeat(n) {
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res = fortyTwo.log()
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}
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}
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}
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}
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@ -0,0 +1,40 @@
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package kscience.kmath.benchmarks
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import kscience.kmath.nd.*
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import kscience.kmath.operations.RealField
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import kscience.kmath.operations.invoke
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import kscience.kmath.viktor.ViktorNDField
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import org.jetbrains.bio.viktor.F64Array
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import org.openjdk.jmh.annotations.Benchmark
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import org.openjdk.jmh.annotations.Scope
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import org.openjdk.jmh.annotations.State
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@State(Scope.Benchmark)
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internal class ViktorLogBenchmark {
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final val dim: Int = 1000
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final val n: Int = 100
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// automatically build context most suited for given type.
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final val autoField: BufferedNDField<Double, RealField> = NDAlgebra.auto(RealField, dim, dim)
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final val realField: RealNDField = NDAlgebra.real(dim, dim)
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final val viktorField: ViktorNDField = ViktorNDField(intArrayOf(dim, dim))
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@Benchmark
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fun realFieldLog() {
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realField {
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val fortyTwo = produce { 42.0 }
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var res = one
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repeat(n) { res = ln(fortyTwo) }
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}
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}
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@Benchmark
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fun rawViktorLog() {
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val fortyTwo = F64Array.full(dim, dim, init = 42.0)
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var res: F64Array
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repeat(n) {
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res = fortyTwo.log()
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}
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}
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}
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@ -5,6 +5,7 @@ import kscience.kmath.nd.*
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import kscience.kmath.nd4j.Nd4jArrayField
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import kscience.kmath.nd4j.Nd4jArrayField
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import kscience.kmath.operations.RealField
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import kscience.kmath.operations.RealField
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import kscience.kmath.operations.invoke
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import kscience.kmath.operations.invoke
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import kscience.kmath.viktor.ViktorNDField
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import org.nd4j.linalg.factory.Nd4j
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import org.nd4j.linalg.factory.Nd4j
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import kotlin.contracts.InvocationKind
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import kotlin.contracts.InvocationKind
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import kotlin.contracts.contract
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import kotlin.contracts.contract
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@ -25,18 +26,15 @@ fun main() {
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// automatically build context most suited for given type.
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// automatically build context most suited for given type.
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val autoField = NDAlgebra.auto(RealField, dim, dim)
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val autoField = NDAlgebra.auto(RealField, dim, dim)
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// specialized nd-field for Double. It works as generic Double field as well
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// specialized nd-field for Double. It works as generic Double field as well
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val specializedField = NDAlgebra.real(dim, dim)
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val realField = NDAlgebra.real(dim, dim)
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//A generic boxing field. It should be used for objects, not primitives.
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//A generic boxing field. It should be used for objects, not primitives.
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val boxingField = NDAlgebra.field(RealField, Buffer.Companion::boxing, dim, dim)
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val boxingField = NDAlgebra.field(RealField, Buffer.Companion::boxing, dim, dim)
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// Nd4j specialized field.
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// Nd4j specialized field.
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val nd4jField = Nd4jArrayField.real(dim, dim)
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val nd4jField = Nd4jArrayField.real(dim, dim)
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//viktor field
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measureAndPrint("Automatic field addition") {
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val viktorField = ViktorNDField(dim,dim)
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autoField {
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//parallel processing based on Java Streams
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var res: NDStructure<Double> = one
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val parallelField = NDAlgebra.realWithStream(dim,dim)
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repeat(n) { res += 1.0 }
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}
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}
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measureAndPrint("Boxing addition") {
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measureAndPrint("Boxing addition") {
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boxingField {
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boxingField {
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@ -46,7 +44,7 @@ fun main() {
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}
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}
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measureAndPrint("Specialized addition") {
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measureAndPrint("Specialized addition") {
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specializedField {
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realField {
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var res: NDStructure<Double> = one
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var res: NDStructure<Double> = one
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repeat(n) { res += 1.0 }
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repeat(n) { res += 1.0 }
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}
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}
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@ -59,8 +57,29 @@ fun main() {
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}
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}
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}
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}
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measureAndPrint("Viktor addition") {
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viktorField {
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var res: NDStructure<Double> = one
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repeat(n) { res += 1.0 }
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}
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}
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measureAndPrint("Parallel stream addition") {
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parallelField {
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var res: NDStructure<Double> = one
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repeat(n) { res += 1.0 }
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}
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}
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measureAndPrint("Automatic field addition") {
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autoField {
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var res: NDStructure<Double> = one
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repeat(n) { res += 1.0 }
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}
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}
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measureAndPrint("Lazy addition") {
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measureAndPrint("Lazy addition") {
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val res = specializedField.one.mapAsync(GlobalScope) {
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val res = realField.one.mapAsync(GlobalScope) {
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var c = 0.0
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var c = 0.0
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repeat(n) {
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repeat(n) {
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c += 1.0
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c += 1.0
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@ -0,0 +1,103 @@
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package kscience.kmath.structures
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import kscience.kmath.misc.UnstableKMathAPI
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import kscience.kmath.nd.*
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import kscience.kmath.operations.ExtendedField
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import kscience.kmath.operations.RealField
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import kscience.kmath.operations.RingWithNumbers
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import java.util.*
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import java.util.stream.IntStream
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/**
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* A demonstration implementation of NDField over Real using Java [DoubleStream] for parallel execution
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*/
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@OptIn(UnstableKMathAPI::class)
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public class StreamRealNDField(
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shape: IntArray,
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) : BufferedNDField<Double, RealField>(shape, RealField, Buffer.Companion::real),
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RingWithNumbers<NDStructure<Double>>,
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ExtendedField<NDStructure<Double>> {
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override val zero: NDBuffer<Double> by lazy { produce { zero } }
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override val one: NDBuffer<Double> by lazy { produce { one } }
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override fun number(value: Number): NDBuffer<Double> {
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val d = value.toDouble() // minimize conversions
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return produce { d }
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}
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override val NDStructure<Double>.buffer: RealBuffer
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get() = when {
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!shape.contentEquals(this@StreamRealNDField.shape) -> throw ShapeMismatchException(
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this@StreamRealNDField.shape,
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shape
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)
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this is NDBuffer && this.strides == this@StreamRealNDField.strides -> this.buffer as RealBuffer
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else -> RealBuffer(strides.linearSize) { offset -> get(strides.index(offset)) }
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}
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override fun produce(initializer: RealField.(IntArray) -> Double): NDBuffer<Double> {
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val array = IntStream.range(0, strides.linearSize).parallel().mapToDouble { offset ->
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val index = strides.index(offset)
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RealField.initializer(index)
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}.toArray()
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return NDBuffer(strides, array.asBuffer())
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}
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override fun map(
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arg: NDStructure<Double>,
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transform: RealField.(Double) -> Double,
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): NDBuffer<Double> {
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val array = Arrays.stream(arg.buffer.array).parallel().map { RealField.transform(it) }.toArray()
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return NDBuffer(strides, array.asBuffer())
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}
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override fun mapIndexed(
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arg: NDStructure<Double>,
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transform: RealField.(index: IntArray, Double) -> Double,
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): NDBuffer<Double> {
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val array = IntStream.range(0, strides.linearSize).parallel().mapToDouble { offset ->
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RealField.transform(
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strides.index(offset),
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arg.buffer.array[offset]
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)
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}.toArray()
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return NDBuffer(strides, array.asBuffer())
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}
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override fun combine(
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a: NDStructure<Double>,
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b: NDStructure<Double>,
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transform: RealField.(Double, Double) -> Double,
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): NDBuffer<Double> {
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val array = IntStream.range(0, strides.linearSize).parallel().mapToDouble { offset ->
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RealField.transform(a.buffer.array[offset], b.buffer.array[offset])
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}.toArray()
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return NDBuffer(strides, array.asBuffer())
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}
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override fun power(arg: NDStructure<Double>, pow: Number): NDBuffer<Double> = map(arg) { power(it, pow) }
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override fun exp(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { exp(it) }
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override fun ln(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { ln(it) }
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override fun sin(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { sin(it) }
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override fun cos(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { cos(it) }
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override fun tan(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { tan(it) }
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override fun asin(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { asin(it) }
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override fun acos(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { acos(it) }
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override fun atan(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { atan(it) }
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override fun sinh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { sinh(it) }
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override fun cosh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { cosh(it) }
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override fun tanh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { tanh(it) }
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override fun asinh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { asinh(it) }
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override fun acosh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { acosh(it) }
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override fun atanh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { atanh(it) }
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}
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fun NDAlgebra.Companion.realWithStream(vararg shape: Int): StreamRealNDField = StreamRealNDField(shape)
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@ -18,40 +18,36 @@ public interface BufferNDAlgebra<T, C> : NDAlgebra<T, C> {
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}
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}
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)
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)
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public val NDStructure<T>.ndBuffer: NDBuffer<T>
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public val NDStructure<T>.buffer: Buffer<T>
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get() = when {
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get() = when {
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!shape.contentEquals(this@BufferNDAlgebra.shape) -> throw ShapeMismatchException(
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!shape.contentEquals(this@BufferNDAlgebra.shape) -> throw ShapeMismatchException(
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this@BufferNDAlgebra.shape,
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this@BufferNDAlgebra.shape,
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shape
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shape
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)
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)
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this is NDBuffer && this.strides == this@BufferNDAlgebra.strides -> this
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this is NDBuffer && this.strides == this@BufferNDAlgebra.strides -> this.buffer
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else -> produce { this@ndBuffer[it] }
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else -> bufferFactory(strides.linearSize) { offset -> get(strides.index(offset)) }
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}
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}
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override fun map(arg: NDStructure<T>, transform: C.(T) -> T): NDBuffer<T> {
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override fun map(arg: NDStructure<T>, transform: C.(T) -> T): NDBuffer<T> {
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val argAsBuffer = arg.ndBuffer
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val buffer = bufferFactory(strides.linearSize) { offset ->
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val buffer = bufferFactory(strides.linearSize) { offset ->
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elementContext.transform(argAsBuffer.buffer[offset])
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elementContext.transform(arg.buffer[offset])
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}
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}
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return NDBuffer(strides, buffer)
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return NDBuffer(strides, buffer)
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}
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}
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override fun mapIndexed(arg: NDStructure<T>, transform: C.(index: IntArray, T) -> T): NDStructure<T> {
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override fun mapIndexed(arg: NDStructure<T>, transform: C.(index: IntArray, T) -> T): NDStructure<T> {
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val argAsBuffer = arg.ndBuffer
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val buffer = bufferFactory(strides.linearSize) { offset ->
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val buffer = bufferFactory(strides.linearSize) { offset ->
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elementContext.transform(
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elementContext.transform(
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strides.index(offset),
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strides.index(offset),
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argAsBuffer[offset]
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arg.buffer[offset]
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)
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)
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}
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}
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return NDBuffer(strides, buffer)
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return NDBuffer(strides, buffer)
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}
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}
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override fun combine(a: NDStructure<T>, b: NDStructure<T>, transform: C.(T, T) -> T): NDStructure<T> {
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override fun combine(a: NDStructure<T>, b: NDStructure<T>, transform: C.(T, T) -> T): NDStructure<T> {
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val aBuffer = a.ndBuffer
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val bBuffer = b.ndBuffer
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val buffer = bufferFactory(strides.linearSize) { offset ->
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val buffer = bufferFactory(strides.linearSize) { offset ->
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elementContext.transform(aBuffer.buffer[offset], bBuffer.buffer[offset])
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elementContext.transform(a.buffer[offset], b.buffer[offset])
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}
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}
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return NDBuffer(strides, buffer)
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return NDBuffer(strides, buffer)
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}
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}
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@ -119,10 +115,14 @@ public fun <T, A : Field<T>> NDAlgebra.Companion.field(
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vararg shape: Int,
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vararg shape: Int,
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): BufferedNDField<T, A> = BufferedNDField(shape, field, bufferFactory)
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): BufferedNDField<T, A> = BufferedNDField(shape, field, bufferFactory)
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@Suppress("UNCHECKED_CAST")
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public inline fun <reified T : Any, A : Field<T>> NDAlgebra.Companion.auto(
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public inline fun <reified T : Any, A : Field<T>> NDAlgebra.Companion.auto(
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field: A,
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field: A,
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vararg shape: Int,
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vararg shape: Int,
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): BufferedNDField<T, A> = BufferedNDField(shape, field, Buffer.Companion::auto)
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): NDField<T, A> = when (field) {
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RealField -> RealNDField(shape) as NDField<T, A>
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else -> BufferedNDField(shape, field, Buffer.Companion::auto)
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}
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public inline fun <T, A : Field<T>, R> A.ndField(
|
public inline fun <T, A : Field<T>, R> A.ndField(
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noinline bufferFactory: BufferFactory<T>,
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noinline bufferFactory: BufferFactory<T>,
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|
@ -11,7 +11,7 @@ import kotlin.contracts.contract
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* An optimized nd-field for complex numbers
|
* An optimized nd-field for complex numbers
|
||||||
*/
|
*/
|
||||||
@OptIn(UnstableKMathAPI::class)
|
@OptIn(UnstableKMathAPI::class)
|
||||||
public open class ComplexNDField(
|
public class ComplexNDField(
|
||||||
shape: IntArray,
|
shape: IntArray,
|
||||||
) : BufferedNDField<Complex, ComplexField>(shape, ComplexField, Buffer.Companion::complex),
|
) : BufferedNDField<Complex, ComplexField>(shape, ComplexField, Buffer.Companion::complex),
|
||||||
RingWithNumbers<NDStructure<Complex>>,
|
RingWithNumbers<NDStructure<Complex>>,
|
||||||
|
@ -24,37 +24,46 @@ public class RealNDField(
|
|||||||
return produce { d }
|
return produce { d }
|
||||||
}
|
}
|
||||||
|
|
||||||
|
override val NDStructure<Double>.buffer: RealBuffer
|
||||||
|
get() = when {
|
||||||
|
!shape.contentEquals(this@RealNDField.shape) -> throw ShapeMismatchException(
|
||||||
|
this@RealNDField.shape,
|
||||||
|
shape
|
||||||
|
)
|
||||||
|
this is NDBuffer && this.strides == this@RealNDField.strides -> this.buffer as RealBuffer
|
||||||
|
else -> RealBuffer(strides.linearSize) { offset -> get(strides.index(offset)) }
|
||||||
|
}
|
||||||
|
|
||||||
@Suppress("OVERRIDE_BY_INLINE")
|
@Suppress("OVERRIDE_BY_INLINE")
|
||||||
override inline fun map(
|
override inline fun map(
|
||||||
arg: NDStructure<Double>,
|
arg: NDStructure<Double>,
|
||||||
transform: RealField.(Double) -> Double,
|
transform: RealField.(Double) -> Double,
|
||||||
): NDBuffer<Double> {
|
): NDBuffer<Double> {
|
||||||
val argAsBuffer = arg.ndBuffer
|
val buffer = RealBuffer(strides.linearSize) { offset -> RealField.transform(arg.buffer.array[offset]) }
|
||||||
val buffer = RealBuffer(strides.linearSize) { offset -> RealField.transform(argAsBuffer.buffer[offset]) }
|
|
||||||
return NDBuffer(strides, buffer)
|
return NDBuffer(strides, buffer)
|
||||||
}
|
}
|
||||||
|
|
||||||
@Suppress("OVERRIDE_BY_INLINE")
|
@Suppress("OVERRIDE_BY_INLINE")
|
||||||
override inline fun produce(initializer: RealField.(IntArray) -> Double): NDBuffer<Double> {
|
override inline fun produce(initializer: RealField.(IntArray) -> Double): NDBuffer<Double> {
|
||||||
val buffer = RealBuffer(strides.linearSize) { offset -> elementContext.initializer(strides.index(offset)) }
|
val array = DoubleArray(strides.linearSize) { offset ->
|
||||||
return NDBuffer(strides, buffer)
|
val index = strides.index(offset)
|
||||||
|
RealField.initializer(index)
|
||||||
|
}
|
||||||
|
return NDBuffer(strides, RealBuffer(array))
|
||||||
}
|
}
|
||||||
|
|
||||||
@Suppress("OVERRIDE_BY_INLINE")
|
@Suppress("OVERRIDE_BY_INLINE")
|
||||||
override inline fun mapIndexed(
|
override inline fun mapIndexed(
|
||||||
arg: NDStructure<Double>,
|
arg: NDStructure<Double>,
|
||||||
transform: RealField.(index: IntArray, Double) -> Double,
|
transform: RealField.(index: IntArray, Double) -> Double,
|
||||||
): NDBuffer<Double> {
|
): NDBuffer<Double> = NDBuffer(
|
||||||
val argAsBuffer = arg.ndBuffer
|
strides,
|
||||||
return NDBuffer(
|
buffer = RealBuffer(strides.linearSize) { offset ->
|
||||||
strides,
|
RealField.transform(
|
||||||
RealBuffer(strides.linearSize) { offset ->
|
strides.index(offset),
|
||||||
elementContext.transform(
|
arg.buffer.array[offset]
|
||||||
strides.index(offset),
|
)
|
||||||
argAsBuffer.buffer[offset]
|
})
|
||||||
)
|
|
||||||
})
|
|
||||||
}
|
|
||||||
|
|
||||||
@Suppress("OVERRIDE_BY_INLINE")
|
@Suppress("OVERRIDE_BY_INLINE")
|
||||||
override inline fun combine(
|
override inline fun combine(
|
||||||
@ -62,10 +71,8 @@ public class RealNDField(
|
|||||||
b: NDStructure<Double>,
|
b: NDStructure<Double>,
|
||||||
transform: RealField.(Double, Double) -> Double,
|
transform: RealField.(Double, Double) -> Double,
|
||||||
): NDBuffer<Double> {
|
): NDBuffer<Double> {
|
||||||
val aBuffer = a.ndBuffer
|
|
||||||
val bBuffer = b.ndBuffer
|
|
||||||
val buffer = RealBuffer(strides.linearSize) { offset ->
|
val buffer = RealBuffer(strides.linearSize) { offset ->
|
||||||
elementContext.transform(aBuffer.buffer[offset], bBuffer.buffer[offset])
|
RealField.transform(a.buffer.array[offset], b.buffer.array[offset])
|
||||||
}
|
}
|
||||||
return NDBuffer(strides, buffer)
|
return NDBuffer(strides, buffer)
|
||||||
}
|
}
|
||||||
@ -91,19 +98,6 @@ public class RealNDField(
|
|||||||
override fun atanh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { atanh(it) }
|
override fun atanh(arg: NDStructure<Double>): NDBuffer<Double> = map(arg) { atanh(it) }
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
/**
|
|
||||||
* Fast element production using function inlining
|
|
||||||
*/
|
|
||||||
public inline fun BufferedNDField<Double, RealField>.produceInline(crossinline initializer: RealField.(IntArray) -> Double): NDBuffer<Double> {
|
|
||||||
contract { callsInPlace(initializer, InvocationKind.EXACTLY_ONCE) }
|
|
||||||
val array = DoubleArray(strides.linearSize) { offset ->
|
|
||||||
val index = strides.index(offset)
|
|
||||||
RealField.initializer(index)
|
|
||||||
}
|
|
||||||
return NDBuffer(strides, RealBuffer(array))
|
|
||||||
}
|
|
||||||
|
|
||||||
public fun NDAlgebra.Companion.real(vararg shape: Int): RealNDField = RealNDField(shape)
|
public fun NDAlgebra.Companion.real(vararg shape: Int): RealNDField = RealNDField(shape)
|
||||||
|
|
||||||
/**
|
/**
|
||||||
|
@ -9,7 +9,7 @@ import kotlin.contracts.InvocationKind
|
|||||||
import kotlin.contracts.contract
|
import kotlin.contracts.contract
|
||||||
|
|
||||||
@OptIn(UnstableKMathAPI::class)
|
@OptIn(UnstableKMathAPI::class)
|
||||||
public open class ShortNDRing(
|
public class ShortNDRing(
|
||||||
shape: IntArray,
|
shape: IntArray,
|
||||||
) : BufferedNDRing<Short, ShortRing>(shape, ShortRing, Buffer.Companion::auto),
|
) : BufferedNDRing<Short, ShortRing>(shape, ShortRing, Buffer.Companion::auto),
|
||||||
RingWithNumbers<NDStructure<Short>> {
|
RingWithNumbers<NDStructure<Short>> {
|
||||||
|
@ -58,7 +58,7 @@ public interface Structure2D<T> : NDStructure<T> {
|
|||||||
rows: Int,
|
rows: Int,
|
||||||
columns: Int,
|
columns: Int,
|
||||||
crossinline init: (i: Int, j: Int) -> Double,
|
crossinline init: (i: Int, j: Int) -> Double,
|
||||||
): Matrix<Double> = NDAlgebra.real(rows, columns).produceInline { (i, j) ->
|
): Matrix<Double> = NDAlgebra.real(rows, columns).produce { (i, j) ->
|
||||||
init(i, j)
|
init(i, j)
|
||||||
}.as2D()
|
}.as2D()
|
||||||
}
|
}
|
||||||
|
@ -11,8 +11,8 @@ import kotlin.test.assertEquals
|
|||||||
@Suppress("UNUSED_VARIABLE")
|
@Suppress("UNUSED_VARIABLE")
|
||||||
class NumberNDFieldTest {
|
class NumberNDFieldTest {
|
||||||
val algebra = NDAlgebra.real(3,3)
|
val algebra = NDAlgebra.real(3,3)
|
||||||
val array1 = algebra.produceInline { (i, j) -> (i + j).toDouble() }
|
val array1 = algebra.produce { (i, j) -> (i + j).toDouble() }
|
||||||
val array2 = algebra.produceInline { (i, j) -> (i - j).toDouble() }
|
val array2 = algebra.produce { (i, j) -> (i - j).toDouble() }
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
fun testSum() {
|
fun testSum() {
|
||||||
|
@ -93,4 +93,6 @@ public class ViktorNDField(public override val shape: IntArray) : NDField<Double
|
|||||||
|
|
||||||
public override inline fun NDStructure<Double>.plus(arg: Double): ViktorNDStructure =
|
public override inline fun NDStructure<Double>.plus(arg: Double): ViktorNDStructure =
|
||||||
(f64Buffer.plus(arg)).asStructure()
|
(f64Buffer.plus(arg)).asStructure()
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public fun ViktorNDField(vararg shape: Int): ViktorNDField = ViktorNDField(shape)
|
Loading…
Reference in New Issue
Block a user