Dev #194

Merged
altavir merged 266 commits from dev into master 2021-01-20 17:32:32 +03:00
13 changed files with 112 additions and 89 deletions
Showing only changes of commit 712df04170 - Show all commits

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@ -16,13 +16,14 @@
- ND4J support module submitting `NDStructure` and `NDAlgebra` over `INDArray`. - ND4J support module submitting `NDStructure` and `NDAlgebra` over `INDArray`.
- Coroutine-deterministic Monte-Carlo scope with a random number generator. - Coroutine-deterministic Monte-Carlo scope with a random number generator.
- Some minor utilities to `kmath-for-real`. - Some minor utilities to `kmath-for-real`.
- Generic operation result parameter to `MatrixContext`
### Changed ### Changed
- Package changed from `scientifik` to `kscience.kmath`. - Package changed from `scientifik` to `kscience.kmath`.
- Gradle version: 6.6 -> 6.7 - Gradle version: 6.6 -> 6.7.1
- Minor exceptions refactor (throwing `IllegalArgumentException` by argument checks instead of `IllegalStateException`) - Minor exceptions refactor (throwing `IllegalArgumentException` by argument checks instead of `IllegalStateException`)
- `Polynomial` secondary constructor made function. - `Polynomial` secondary constructor made function.
- Kotlin version: 1.3.72 -> 1.4.20-M1 - Kotlin version: 1.3.72 -> 1.4.20
- `kmath-ast` doesn't depend on heavy `kotlin-reflect` library. - `kmath-ast` doesn't depend on heavy `kotlin-reflect` library.
- Full autodiff refactoring based on `Symbol` - Full autodiff refactoring based on `Symbol`
- `kmath-prob` renamed to `kmath-stat` - `kmath-prob` renamed to `kmath-stat`
@ -30,6 +31,7 @@
- Use `Point<Double>` instead of specialized type in `kmath-for-real` - Use `Point<Double>` instead of specialized type in `kmath-for-real`
- Optimized dot product for buffer matrices moved to `kmath-for-real` - Optimized dot product for buffer matrices moved to `kmath-for-real`
- EjmlMatrix context is an object - EjmlMatrix context is an object
- Matrix LUP `inverse` renamed to `inverseWithLUP`
### Deprecated ### Deprecated
@ -37,6 +39,7 @@
- `kmath-koma` module because it doesn't support Kotlin 1.4. - `kmath-koma` module because it doesn't support Kotlin 1.4.
- Support of `legacy` JS backend (we will support only IR) - Support of `legacy` JS backend (we will support only IR)
- `toGrid` method. - `toGrid` method.
- Public visibility of `BufferAccessor2D`
### Fixed ### Fixed
- `symbol` method in `MstExtendedField` (https://github.com/mipt-npm/kmath/pull/140) - `symbol` method in `MstExtendedField` (https://github.com/mipt-npm/kmath/pull/140)

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@ -29,7 +29,7 @@ class LinearAlgebraBenchmark {
@Benchmark @Benchmark
fun kmathLUPInversion() { fun kmathLUPInversion() {
MatrixContext.real.inverse(matrix) MatrixContext.real.inverseWithLUP(matrix)
} }
@Benchmark @Benchmark

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@ -5,8 +5,7 @@ import kscience.kmath.structures.Matrix
import kscience.kmath.structures.NDStructure import kscience.kmath.structures.NDStructure
import org.apache.commons.math3.linear.* import org.apache.commons.math3.linear.*
public class CMMatrix(public val origin: RealMatrix, features: Set<MatrixFeature>? = null) : public class CMMatrix(public val origin: RealMatrix, features: Set<MatrixFeature>? = null) : FeaturedMatrix<Double> {
FeaturedMatrix<Double> {
public override val rowNum: Int get() = origin.rowDimension public override val rowNum: Int get() = origin.rowDimension
public override val colNum: Int get() = origin.columnDimension public override val colNum: Int get() = origin.columnDimension
@ -55,7 +54,7 @@ public fun Point<Double>.toCM(): CMVector = if (this is CMVector) this else {
public fun RealVector.toPoint(): CMVector = CMVector(this) public fun RealVector.toPoint(): CMVector = CMVector(this)
public object CMMatrixContext : MatrixContext<Double> { public object CMMatrixContext : MatrixContext<Double, CMMatrix> {
public override fun produce(rows: Int, columns: Int, initializer: (i: Int, j: Int) -> Double): CMMatrix { public override fun produce(rows: Int, columns: Int, initializer: (i: Int, j: Int) -> Double): CMMatrix {
val array = Array(rows) { i -> DoubleArray(columns) { j -> initializer(i, j) } } val array = Array(rows) { i -> DoubleArray(columns) { j -> initializer(i, j) } }
return CMMatrix(Array2DRowRealMatrix(array)) return CMMatrix(Array2DRowRealMatrix(array))
@ -79,7 +78,7 @@ public object CMMatrixContext : MatrixContext<Double> {
public override fun multiply(a: Matrix<Double>, k: Number): CMMatrix = public override fun multiply(a: Matrix<Double>, k: Number): CMMatrix =
CMMatrix(a.toCM().origin.scalarMultiply(k.toDouble())) CMMatrix(a.toCM().origin.scalarMultiply(k.toDouble()))
public override operator fun Matrix<Double>.times(value: Double): Matrix<Double> = public override operator fun Matrix<Double>.times(value: Double): CMMatrix =
produce(rowNum, colNum) { i, j -> get(i, j) * value } produce(rowNum, colNum) { i, j -> get(i, j) * value }
} }

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@ -10,7 +10,7 @@ import kscience.kmath.structures.*
public class BufferMatrixContext<T : Any, R : Ring<T>>( public class BufferMatrixContext<T : Any, R : Ring<T>>(
public override val elementContext: R, public override val elementContext: R,
private val bufferFactory: BufferFactory<T>, private val bufferFactory: BufferFactory<T>,
) : GenericMatrixContext<T, R> { ) : GenericMatrixContext<T, R, BufferMatrix<T>> {
public override fun produce(rows: Int, columns: Int, initializer: (i: Int, j: Int) -> T): BufferMatrix<T> { public override fun produce(rows: Int, columns: Int, initializer: (i: Int, j: Int) -> T): BufferMatrix<T> {
val buffer = bufferFactory(rows * columns) { offset -> initializer(offset / columns, offset % columns) } val buffer = bufferFactory(rows * columns) { offset -> initializer(offset / columns, offset % columns) }
return BufferMatrix(rows, columns, buffer) return BufferMatrix(rows, columns, buffer)
@ -22,7 +22,7 @@ public class BufferMatrixContext<T : Any, R : Ring<T>>(
} }
@Suppress("OVERRIDE_BY_INLINE") @Suppress("OVERRIDE_BY_INLINE")
public object RealMatrixContext : GenericMatrixContext<Double, RealField> { public object RealMatrixContext : GenericMatrixContext<Double, RealField, BufferMatrix<Double>> {
public override val elementContext: RealField public override val elementContext: RealField
get() = RealField get() = RealField

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@ -57,7 +57,7 @@ public inline fun <reified T : Any> Matrix<*>.getFeature(): T? =
/** /**
* Diagonal matrix of ones. The matrix is virtual no actual matrix is created * Diagonal matrix of ones. The matrix is virtual no actual matrix is created
*/ */
public fun <T : Any, R : Ring<T>> GenericMatrixContext<T, R>.one(rows: Int, columns: Int): FeaturedMatrix<T> = public fun <T : Any, R : Ring<T>> GenericMatrixContext<T, R, *>.one(rows: Int, columns: Int): FeaturedMatrix<T> =
VirtualMatrix(rows, columns, DiagonalFeature) { i, j -> VirtualMatrix(rows, columns, DiagonalFeature) { i, j ->
if (i == j) elementContext.one else elementContext.zero if (i == j) elementContext.one else elementContext.zero
} }
@ -66,7 +66,7 @@ public fun <T : Any, R : Ring<T>> GenericMatrixContext<T, R>.one(rows: Int, colu
/** /**
* A virtual matrix of zeroes * A virtual matrix of zeroes
*/ */
public fun <T : Any, R : Ring<T>> GenericMatrixContext<T, R>.zero(rows: Int, columns: Int): FeaturedMatrix<T> = public fun <T : Any, R : Ring<T>> GenericMatrixContext<T, R, *>.zero(rows: Int, columns: Int): FeaturedMatrix<T> =
VirtualMatrix(rows, columns) { _, _ -> elementContext.zero } VirtualMatrix(rows, columns) { _, _ -> elementContext.zero }
public class TransposedFeature<T : Any>(public val original: Matrix<T>) : MatrixFeature public class TransposedFeature<T : Any>(public val original: Matrix<T>) : MatrixFeature

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@ -1,25 +1,18 @@
package kscience.kmath.linear package kscience.kmath.linear
import kscience.kmath.operations.Field import kscience.kmath.operations.*
import kscience.kmath.operations.RealField import kscience.kmath.structures.*
import kscience.kmath.operations.Ring
import kscience.kmath.operations.invoke
import kscience.kmath.structures.BufferAccessor2D
import kscience.kmath.structures.Matrix
import kscience.kmath.structures.Structure2D
import kotlin.reflect.KClass
/** /**
* Common implementation of [LUPDecompositionFeature] * Common implementation of [LUPDecompositionFeature]
*/ */
public class LUPDecomposition<T : Any>( public class LUPDecomposition<T : Any>(
public val context: GenericMatrixContext<T, out Field<T>>, public val context: MatrixContext<T, FeaturedMatrix<T>>,
public val elementContext: Field<T>,
public val lu: Structure2D<T>, public val lu: Structure2D<T>,
public val pivot: IntArray, public val pivot: IntArray,
private val even: Boolean private val even: Boolean,
) : LUPDecompositionFeature<T>, DeterminantFeature<T> { ) : LUPDecompositionFeature<T>, DeterminantFeature<T> {
public val elementContext: Field<T>
get() = context.elementContext
/** /**
* Returns the matrix L of the decomposition. * Returns the matrix L of the decomposition.
@ -64,23 +57,25 @@ public class LUPDecomposition<T : Any>(
} }
public fun <T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.abs(value: T): T = @PublishedApi
internal fun <T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F, *>.abs(value: T): T =
if (value > elementContext.zero) value else elementContext { -value } if (value > elementContext.zero) value else elementContext { -value }
/** /**
* Create a lup decomposition of generic matrix * Create a lup decomposition of generic matrix.
*/ */
public inline fun <T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.lup( public fun <T : Comparable<T>> MatrixContext<T, FeaturedMatrix<T>>.lup(
type: KClass<T>, factory: MutableBufferFactory<T>,
elementContext: Field<T>,
matrix: Matrix<T>, matrix: Matrix<T>,
checkSingular: (T) -> Boolean checkSingular: (T) -> Boolean,
): LUPDecomposition<T> { ): LUPDecomposition<T> {
require(matrix.rowNum == matrix.colNum) { "LU decomposition supports only square matrices" } require(matrix.rowNum == matrix.colNum) { "LU decomposition supports only square matrices" }
val m = matrix.colNum val m = matrix.colNum
val pivot = IntArray(matrix.rowNum) val pivot = IntArray(matrix.rowNum)
//TODO just waits for KEEP-176 //TODO just waits for KEEP-176
BufferAccessor2D(type, matrix.rowNum, matrix.colNum).run { BufferAccessor2D(matrix.rowNum, matrix.colNum, factory).run {
elementContext { elementContext {
val lu = create(matrix) val lu = create(matrix)
@ -112,14 +107,14 @@ public inline fun <T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.l
luRow[col] = sum luRow[col] = sum
// maintain best permutation choice // maintain best permutation choice
if (this@lup.abs(sum) > largest) { if (abs(sum) > largest) {
largest = this@lup.abs(sum) largest = abs(sum)
max = row max = row
} }
} }
// Singularity check // Singularity check
check(!checkSingular(this@lup.abs(lu[max, col]))) { "The matrix is singular" } check(!checkSingular(abs(lu[max, col]))) { "The matrix is singular" }
// Pivot if necessary // Pivot if necessary
if (max != col) { if (max != col) {
@ -143,23 +138,23 @@ public inline fun <T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.l
for (row in col + 1 until m) lu[row, col] /= luDiag for (row in col + 1 until m) lu[row, col] /= luDiag
} }
return LUPDecomposition(this@lup, lu.collect(), pivot, even) return LUPDecomposition(this@lup, elementContext, lu.collect(), pivot, even)
} }
} }
} }
public inline fun <reified T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.lup( public inline fun <reified T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F, FeaturedMatrix<T>>.lup(
matrix: Matrix<T>, matrix: Matrix<T>,
checkSingular: (T) -> Boolean noinline checkSingular: (T) -> Boolean,
): LUPDecomposition<T> = lup(T::class, matrix, checkSingular) ): LUPDecomposition<T> = lup(MutableBuffer.Companion::auto, elementContext, matrix, checkSingular)
public fun GenericMatrixContext<Double, RealField>.lup(matrix: Matrix<Double>): LUPDecomposition<Double> = public fun MatrixContext<Double, FeaturedMatrix<Double>>.lup(matrix: Matrix<Double>): LUPDecomposition<Double> =
lup(Double::class, matrix) { it < 1e-11 } lup(Buffer.Companion::real, RealField, matrix) { it < 1e-11 }
public fun <T : Any> LUPDecomposition<T>.solve(type: KClass<T>, matrix: Matrix<T>): Matrix<T> { public fun <T : Any> LUPDecomposition<T>.solveWithLUP(factory: MutableBufferFactory<T>, matrix: Matrix<T>): FeaturedMatrix<T> {
require(matrix.rowNum == pivot.size) { "Matrix dimension mismatch. Expected ${pivot.size}, but got ${matrix.colNum}" } require(matrix.rowNum == pivot.size) { "Matrix dimension mismatch. Expected ${pivot.size}, but got ${matrix.colNum}" }
BufferAccessor2D(type, matrix.rowNum, matrix.colNum).run { BufferAccessor2D(matrix.rowNum, matrix.colNum, factory).run {
elementContext { elementContext {
// Apply permutations to b // Apply permutations to b
val bp = create { _, _ -> zero } val bp = create { _, _ -> zero }
@ -201,27 +196,34 @@ public fun <T : Any> LUPDecomposition<T>.solve(type: KClass<T>, matrix: Matrix<T
} }
} }
public inline fun <reified T : Any> LUPDecomposition<T>.solve(matrix: Matrix<T>): Matrix<T> = solve(T::class, matrix) public inline fun <reified T : Any> LUPDecomposition<T>.solveWithLUP(matrix: Matrix<T>): Matrix<T> =
solveWithLUP(MutableBuffer.Companion::auto, matrix)
/** /**
* Solve a linear equation **a*x = b** * Solve a linear equation **a*x = b** using LUP decomposition
*/ */
public inline fun <reified T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.solve( public inline fun <reified T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F, FeaturedMatrix<T>>.solveWithLUP(
a: Matrix<T>, a: Matrix<T>,
b: Matrix<T>, b: Matrix<T>,
checkSingular: (T) -> Boolean noinline bufferFactory: MutableBufferFactory<T> = MutableBuffer.Companion::auto,
): Matrix<T> { noinline checkSingular: (T) -> Boolean,
): FeaturedMatrix<T> {
// Use existing decomposition if it is provided by matrix // Use existing decomposition if it is provided by matrix
val decomposition = a.getFeature() ?: lup(T::class, a, checkSingular) val decomposition = a.getFeature() ?: lup(bufferFactory, elementContext, a, checkSingular)
return decomposition.solve(T::class, b) return decomposition.solveWithLUP(bufferFactory, b)
} }
public fun RealMatrixContext.solve(a: Matrix<Double>, b: Matrix<Double>): Matrix<Double> = solve(a, b) { it < 1e-11 } public fun RealMatrixContext.solveWithLUP(a: Matrix<Double>, b: Matrix<Double>): FeaturedMatrix<Double> =
solveWithLUP(a, b) { it < 1e-11 }
public inline fun <reified T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F>.inverse( public inline fun <reified T : Comparable<T>, F : Field<T>> GenericMatrixContext<T, F, FeaturedMatrix<T>>.inverseWithLUP(
matrix: Matrix<T>, matrix: Matrix<T>,
checkSingular: (T) -> Boolean noinline bufferFactory: MutableBufferFactory<T> = MutableBuffer.Companion::auto,
): Matrix<T> = solve(matrix, one(matrix.rowNum, matrix.colNum), checkSingular) noinline checkSingular: (T) -> Boolean,
): FeaturedMatrix<T> = solveWithLUP(matrix, one(matrix.rowNum, matrix.colNum), bufferFactory, checkSingular)
public fun RealMatrixContext.inverse(matrix: Matrix<Double>): Matrix<Double> = /**
solve(matrix, one(matrix.rowNum, matrix.colNum)) { it < 1e-11 } * Inverses a square matrix using LUP decomposition. Non square matrix will throw a error.
*/
public fun RealMatrixContext.inverseWithLUP(matrix: Matrix<Double>): FeaturedMatrix<Double> =
solveWithLUP(matrix, one(matrix.rowNum, matrix.colNum), Buffer.Companion::real) { it < 1e-11 }

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@ -12,15 +12,16 @@ import kscience.kmath.structures.asSequence
/** /**
* Basic operations on matrices. Operates on [Matrix] * Basic operations on matrices. Operates on [Matrix]
*/ */
public interface MatrixContext<T : Any> : SpaceOperations<Matrix<T>> { public interface MatrixContext<T : Any, out M : Matrix<T>> : SpaceOperations<Matrix<T>> {
/** /**
* Produce a matrix with this context and given dimensions * Produce a matrix with this context and given dimensions
*/ */
public fun produce(rows: Int, columns: Int, initializer: (i: Int, j: Int) -> T): Matrix<T> public fun produce(rows: Int, columns: Int, initializer: (i: Int, j: Int) -> T): M
public override fun binaryOperation(operation: String, left: Matrix<T>, right: Matrix<T>): Matrix<T> = when (operation) { @Suppress("UNCHECKED_CAST")
public override fun binaryOperation(operation: String, left: Matrix<T>, right: Matrix<T>): M = when (operation) {
"dot" -> left dot right "dot" -> left dot right
else -> super.binaryOperation(operation, left, right) else -> super.binaryOperation(operation, left, right) as M
} }
/** /**
@ -30,7 +31,7 @@ public interface MatrixContext<T : Any> : SpaceOperations<Matrix<T>> {
* @param other the multiplier. * @param other the multiplier.
* @return the dot product. * @return the dot product.
*/ */
public infix fun Matrix<T>.dot(other: Matrix<T>): Matrix<T> public infix fun Matrix<T>.dot(other: Matrix<T>): M
/** /**
* Computes the dot product of this matrix and a vector. * Computes the dot product of this matrix and a vector.
@ -48,7 +49,7 @@ public interface MatrixContext<T : Any> : SpaceOperations<Matrix<T>> {
* @param value the multiplier. * @param value the multiplier.
* @receiver the product. * @receiver the product.
*/ */
public operator fun Matrix<T>.times(value: T): Matrix<T> public operator fun Matrix<T>.times(value: T): M
/** /**
* Multiplies an element by a matrix of it. * Multiplies an element by a matrix of it.
@ -57,7 +58,7 @@ public interface MatrixContext<T : Any> : SpaceOperations<Matrix<T>> {
* @param value the multiplier. * @param value the multiplier.
* @receiver the product. * @receiver the product.
*/ */
public operator fun T.times(m: Matrix<T>): Matrix<T> = m * this public operator fun T.times(m: Matrix<T>): M = m * this
public companion object { public companion object {
/** /**
@ -70,18 +71,18 @@ public interface MatrixContext<T : Any> : SpaceOperations<Matrix<T>> {
*/ */
public fun <T : Any, R : Ring<T>> buffered( public fun <T : Any, R : Ring<T>> buffered(
ring: R, ring: R,
bufferFactory: BufferFactory<T> = Buffer.Companion::boxing bufferFactory: BufferFactory<T> = Buffer.Companion::boxing,
): GenericMatrixContext<T, R> = BufferMatrixContext(ring, bufferFactory) ): GenericMatrixContext<T, R, BufferMatrix<T>> = BufferMatrixContext(ring, bufferFactory)
/** /**
* Automatic buffered matrix, unboxed if it is possible * Automatic buffered matrix, unboxed if it is possible
*/ */
public inline fun <reified T : Any, R : Ring<T>> auto(ring: R): GenericMatrixContext<T, R> = public inline fun <reified T : Any, R : Ring<T>> auto(ring: R): GenericMatrixContext<T, R, BufferMatrix<T>> =
buffered(ring, Buffer.Companion::auto) buffered(ring, Buffer.Companion::auto)
} }
} }
public interface GenericMatrixContext<T : Any, R : Ring<T>> : MatrixContext<T> { public interface GenericMatrixContext<T : Any, R : Ring<T>, out M : Matrix<T>> : MatrixContext<T, M> {
/** /**
* The ring context for matrix elements * The ring context for matrix elements
*/ */
@ -92,7 +93,7 @@ public interface GenericMatrixContext<T : Any, R : Ring<T>> : MatrixContext<T> {
*/ */
public fun point(size: Int, initializer: (Int) -> T): Point<T> public fun point(size: Int, initializer: (Int) -> T): Point<T>
public override infix fun Matrix<T>.dot(other: Matrix<T>): Matrix<T> { public override infix fun Matrix<T>.dot(other: Matrix<T>): M {
//TODO add typed error //TODO add typed error
require(colNum == other.rowNum) { "Matrix dot operation dimension mismatch: ($rowNum, $colNum) x (${other.rowNum}, ${other.colNum})" } require(colNum == other.rowNum) { "Matrix dot operation dimension mismatch: ($rowNum, $colNum) x (${other.rowNum}, ${other.colNum})" }
@ -113,10 +114,10 @@ public interface GenericMatrixContext<T : Any, R : Ring<T>> : MatrixContext<T> {
} }
} }
public override operator fun Matrix<T>.unaryMinus(): Matrix<T> = public override operator fun Matrix<T>.unaryMinus(): M =
produce(rowNum, colNum) { i, j -> elementContext { -get(i, j) } } produce(rowNum, colNum) { i, j -> elementContext { -get(i, j) } }
public override fun add(a: Matrix<T>, b: Matrix<T>): Matrix<T> { public override fun add(a: Matrix<T>, b: Matrix<T>): M {
require(a.rowNum == b.rowNum && a.colNum == b.colNum) { require(a.rowNum == b.rowNum && a.colNum == b.colNum) {
"Matrix operation dimension mismatch. [${a.rowNum},${a.colNum}] + [${b.rowNum},${b.colNum}]" "Matrix operation dimension mismatch. [${a.rowNum},${a.colNum}] + [${b.rowNum},${b.colNum}]"
} }
@ -124,7 +125,7 @@ public interface GenericMatrixContext<T : Any, R : Ring<T>> : MatrixContext<T> {
return produce(a.rowNum, a.colNum) { i, j -> elementContext { a[i, j] + b[i, j] } } return produce(a.rowNum, a.colNum) { i, j -> elementContext { a[i, j] + b[i, j] } }
} }
public override operator fun Matrix<T>.minus(b: Matrix<T>): Matrix<T> { public override operator fun Matrix<T>.minus(b: Matrix<T>): M {
require(rowNum == b.rowNum && colNum == b.colNum) { require(rowNum == b.rowNum && colNum == b.colNum) {
"Matrix operation dimension mismatch. [$rowNum,$colNum] - [${b.rowNum},${b.colNum}]" "Matrix operation dimension mismatch. [$rowNum,$colNum] - [${b.rowNum},${b.colNum}]"
} }
@ -132,11 +133,11 @@ public interface GenericMatrixContext<T : Any, R : Ring<T>> : MatrixContext<T> {
return produce(rowNum, colNum) { i, j -> elementContext { get(i, j) + b[i, j] } } return produce(rowNum, colNum) { i, j -> elementContext { get(i, j) + b[i, j] } }
} }
public override fun multiply(a: Matrix<T>, k: Number): Matrix<T> = public override fun multiply(a: Matrix<T>, k: Number): M =
produce(a.rowNum, a.colNum) { i, j -> elementContext { a[i, j] * k } } produce(a.rowNum, a.colNum) { i, j -> elementContext { a[i, j] * k } }
public operator fun Number.times(matrix: FeaturedMatrix<T>): Matrix<T> = matrix * this public operator fun Number.times(matrix: FeaturedMatrix<T>): M = multiply(matrix, this)
public override operator fun Matrix<T>.times(value: T): Matrix<T> = public override operator fun Matrix<T>.times(value: T): M =
produce(rowNum, colNum) { i, j -> elementContext { get(i, j) * value } } produce(rowNum, colNum) { i, j -> elementContext { get(i, j) * value } }
} }

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@ -38,6 +38,11 @@ public fun <T> Space<T>.average(data: Iterable<T>): T = sum(data) / data.count()
*/ */
public fun <T> Space<T>.average(data: Sequence<T>): T = sum(data) / data.count() public fun <T> Space<T>.average(data: Sequence<T>): T = sum(data) / data.count()
/**
* Absolute of the comparable [value]
*/
public fun <T : Comparable<T>> Space<T>.abs(value: T): T = if (value > zero) value else -value
/** /**
* Returns the sum of all elements in the iterable in provided space. * Returns the sum of all elements in the iterable in provided space.
* *

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@ -1,25 +1,31 @@
package kscience.kmath.structures package kscience.kmath.structures
import kotlin.reflect.KClass
/** /**
* A context that allows to operate on a [MutableBuffer] as on 2d array * A context that allows to operate on a [MutableBuffer] as on 2d array
*/ */
public class BufferAccessor2D<T : Any>(public val type: KClass<T>, public val rowNum: Int, public val colNum: Int) { internal class BufferAccessor2D<T : Any>(
public val rowNum: Int,
public val colNum: Int,
val factory: MutableBufferFactory<T>,
) {
public operator fun Buffer<T>.get(i: Int, j: Int): T = get(i + colNum * j) public operator fun Buffer<T>.get(i: Int, j: Int): T = get(i + colNum * j)
public operator fun MutableBuffer<T>.set(i: Int, j: Int, value: T) { public operator fun MutableBuffer<T>.set(i: Int, j: Int, value: T) {
set(i + colNum * j, value) set(i + colNum * j, value)
} }
public inline fun create(init: (i: Int, j: Int) -> T): MutableBuffer<T> = public inline fun create(crossinline init: (i: Int, j: Int) -> T): MutableBuffer<T> =
MutableBuffer.auto(type, rowNum * colNum) { offset -> init(offset / colNum, offset % colNum) } factory(rowNum * colNum) { offset -> init(offset / colNum, offset % colNum) }
public fun create(mat: Structure2D<T>): MutableBuffer<T> = create { i, j -> mat[i, j] } public fun create(mat: Structure2D<T>): MutableBuffer<T> = create { i, j -> mat[i, j] }
//TODO optimize wrapper //TODO optimize wrapper
public fun MutableBuffer<T>.collect(): Structure2D<T> = public fun MutableBuffer<T>.collect(): Structure2D<T> = NDStructure.build(
NDStructure.auto(type, rowNum, colNum) { (i, j) -> get(i, j) }.as2D() DefaultStrides(intArrayOf(rowNum, colNum)),
factory
) { (i, j) ->
get(i, j)
}.as2D()
public inner class Row(public val buffer: MutableBuffer<T>, public val rowIndex: Int) : MutableBuffer<T> { public inner class Row(public val buffer: MutableBuffer<T>, public val rowIndex: Int) : MutableBuffer<T> {
override val size: Int get() = colNum override val size: Int get() = colNum
@ -30,7 +36,7 @@ public class BufferAccessor2D<T : Any>(public val type: KClass<T>, public val ro
buffer[rowIndex, index] = value buffer[rowIndex, index] = value
} }
override fun copy(): MutableBuffer<T> = MutableBuffer.auto(type, colNum) { get(it) } override fun copy(): MutableBuffer<T> = factory(colNum) { get(it) }
override operator fun iterator(): Iterator<T> = (0 until colNum).map(::get).iterator() override operator fun iterator(): Iterator<T> = (0 until colNum).map(::get).iterator()
} }

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@ -9,7 +9,7 @@ class RealLUSolverTest {
@Test @Test
fun testInvertOne() { fun testInvertOne() {
val matrix = MatrixContext.real.one(2, 2) val matrix = MatrixContext.real.one(2, 2)
val inverted = MatrixContext.real.inverse(matrix) val inverted = MatrixContext.real.inverseWithLUP(matrix)
assertEquals(matrix, inverted) assertEquals(matrix, inverted)
} }
@ -37,7 +37,7 @@ class RealLUSolverTest {
1.0, 3.0 1.0, 3.0
) )
val inverted = MatrixContext.real.inverse(matrix) val inverted = MatrixContext.real.inverseWithLUP(matrix)
val expected = Matrix.square( val expected = Matrix.square(
0.375, -0.125, 0.375, -0.125,

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@ -42,7 +42,7 @@ public interface DMatrix<T, R : Dimension, C : Dimension> : Structure2D<T> {
* An inline wrapper for a Matrix * An inline wrapper for a Matrix
*/ */
public inline class DMatrixWrapper<T, R : Dimension, C : Dimension>( public inline class DMatrixWrapper<T, R : Dimension, C : Dimension>(
public val structure: Structure2D<T> private val structure: Structure2D<T>
) : DMatrix<T, R, C> { ) : DMatrix<T, R, C> {
override val shape: IntArray get() = structure.shape override val shape: IntArray get() = structure.shape
override operator fun get(i: Int, j: Int): T = structure[i, j] override operator fun get(i: Int, j: Int): T = structure[i, j]
@ -81,7 +81,7 @@ public inline class DPointWrapper<T, D : Dimension>(public val point: Point<T>)
/** /**
* Basic operations on dimension-safe matrices. Operates on [Matrix] * Basic operations on dimension-safe matrices. Operates on [Matrix]
*/ */
public inline class DMatrixContext<T : Any, Ri : Ring<T>>(public val context: GenericMatrixContext<T, Ri>) { public inline class DMatrixContext<T : Any, Ri : Ring<T>>(public val context: GenericMatrixContext<T, Ri, Matrix<T>>) {
public inline fun <reified R : Dimension, reified C : Dimension> Matrix<T>.coerce(): DMatrix<T, R, C> { public inline fun <reified R : Dimension, reified C : Dimension> Matrix<T>.coerce(): DMatrix<T, R, C> {
require(rowNum == Dimension.dim<R>().toInt()) { require(rowNum == Dimension.dim<R>().toInt()) {
"Row number mismatch: expected ${Dimension.dim<R>()} but found $rowNum" "Row number mismatch: expected ${Dimension.dim<R>()} but found $rowNum"

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@ -1,11 +1,9 @@
package kscience.kmath.ejml package kscience.kmath.ejml
import org.ejml.simple.SimpleMatrix
import kscience.kmath.linear.MatrixContext import kscience.kmath.linear.MatrixContext
import kscience.kmath.linear.Point import kscience.kmath.linear.Point
import kscience.kmath.operations.Space
import kscience.kmath.operations.invoke
import kscience.kmath.structures.Matrix import kscience.kmath.structures.Matrix
import org.ejml.simple.SimpleMatrix
/** /**
* Converts this matrix to EJML one. * Converts this matrix to EJML one.
@ -18,7 +16,7 @@ public fun Matrix<Double>.toEjml(): EjmlMatrix =
* *
* @author Iaroslav Postovalov * @author Iaroslav Postovalov
*/ */
public object EjmlMatrixContext : MatrixContext<Double> { public object EjmlMatrixContext : MatrixContext<Double, EjmlMatrix> {
/** /**
* Converts this vector to EJML one. * Converts this vector to EJML one.

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@ -1,12 +1,16 @@
package kscience.kmath.real package kscience.kmath.real
import kscience.kmath.linear.FeaturedMatrix
import kscience.kmath.linear.MatrixContext import kscience.kmath.linear.MatrixContext
import kscience.kmath.linear.RealMatrixContext.elementContext import kscience.kmath.linear.RealMatrixContext.elementContext
import kscience.kmath.linear.VirtualMatrix import kscience.kmath.linear.VirtualMatrix
import kscience.kmath.linear.inverseWithLUP
import kscience.kmath.misc.UnstableKMathAPI import kscience.kmath.misc.UnstableKMathAPI
import kscience.kmath.operations.invoke import kscience.kmath.operations.invoke
import kscience.kmath.operations.sum import kscience.kmath.operations.sum
import kscience.kmath.structures.* import kscience.kmath.structures.Buffer
import kscience.kmath.structures.RealBuffer
import kscience.kmath.structures.asIterable
import kotlin.math.pow import kotlin.math.pow
/* /*
@ -21,7 +25,7 @@ import kotlin.math.pow
* Functions that help create a real (Double) matrix * Functions that help create a real (Double) matrix
*/ */
public typealias RealMatrix = Matrix<Double> public typealias RealMatrix = FeaturedMatrix<Double>
public fun realMatrix(rowNum: Int, colNum: Int, initializer: (i: Int, j: Int) -> Double): RealMatrix = public fun realMatrix(rowNum: Int, colNum: Int, initializer: (i: Int, j: Int) -> Double): RealMatrix =
MatrixContext.real.produce(rowNum, colNum, initializer) MatrixContext.real.produce(rowNum, colNum, initializer)
@ -148,6 +152,11 @@ public inline fun RealMatrix.map(transform: (Double) -> Double): RealMatrix =
transform(get(i, j)) transform(get(i, j))
} }
/**
* Inverse a square real matrix using LUP decomposition
*/
public fun RealMatrix.inverseWithLUP(): RealMatrix = MatrixContext.real.inverseWithLUP(this)
//extended operations //extended operations
public fun RealMatrix.pow(p: Double): RealMatrix = map { it.pow(p) } public fun RealMatrix.pow(p: Double): RealMatrix = map { it.pow(p) }