Commit Graph

193 Commits

Author SHA1 Message Date
dd5ef4810f Gradle plugin 0.8.0 2021-02-21 16:13:40 +03:00
1ad305ba34 Merge remote-tracking branch 'origin/dev' into dev
# Conflicts:
#	kmath-core/api/kmath-core.api
#	kmath-core/src/commonMain/kotlin/space/kscience/kmath/linear/MatrixContext.kt
2021-02-19 13:50:49 +03:00
6581f3dd8a Cleanup 2021-02-19 13:38:32 +03:00
Iaroslav Postovalov
84adce13c9
Merge pull request #148 from mipt-npm/gsl-experiment
Changes for upcoming GSL extension project
2021-02-19 17:34:27 +07:00
8485d28872 Change package name to space.kscience 2021-02-18 11:17:28 +03:00
f201210fa0 Merge remote-tracking branch 'origin/dev' into dev 2021-02-15 09:35:14 +03:00
987997cc02 Histograms refactor 2021-02-12 22:43:35 +03:00
Iaroslav Postovalov
d69a04bb6e
Merge branch 'dev' into feature/mp-samplers 2021-02-12 20:58:03 +07:00
ee29b218f0 Merge remote-tracking branch 'space/dev' into refactor/histograms 2021-02-12 10:44:10 +03:00
Iaroslav Postovalov
b6be3a0333
Merge branch 'dev' into gsl-experiment 2021-02-11 23:13:57 +07:00
Iaroslav Postovalov
228b55f5ea
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	CHANGELOG.md
#	gradle.properties
#	kmath-core/src/commonMain/kotlin/kscience/kmath/linear/MatrixContext.kt
#	kmath-stat/build.gradle.kts
2021-02-11 17:28:22 +07:00
Iaroslav Postovalov
6aeccef889
Fix benchmarks again 2021-02-11 15:20:29 +07:00
a384b323c3 Update examples to use with instead of invoke on algebras 2021-02-11 11:17:44 +03:00
Alexander Nozik
cd4bfdf59e
Merge pull request #156 from mipt-npm/feature/quaternion
Add fast quaternion implementation, minor changes to complex
2021-02-11 11:01:29 +03:00
Iaroslav Postovalov
a891734ef0
Add newline 2021-02-11 14:53:20 +07:00
Iaroslav Postovalov
b02091402f
Remove explicity qualification 2021-02-11 14:52:26 +07:00
Iaroslav Postovalov
e6876c3f97
Fix benchmarks source set 2021-02-11 14:49:15 +07:00
Iaroslav Postovalov
cd96845c31
Discard a change 2021-02-09 18:12:35 +07:00
Iaroslav Postovalov
9210bc9198
Merge branch 'dev' into feature/mp-samplers 2021-02-06 23:12:16 +07:00
Iaroslav Postovalov
55f8c3938b
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	.github/workflows/build.yml
2021-01-31 14:57:31 +07:00
Iaroslav Postovalov
46650a414e
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
#	README.md
#	kmath-core/README.md
2021-01-31 14:46:11 +07:00
85927c9f6b Documentation update. 2021-01-30 20:12:14 +03:00
Iaroslav Postovalov
955e95690d
Merge branch 'dev' into gsl-experiment 2021-01-30 17:20:36 +07:00
Iaroslav Postovalov
4f78286756
Fix after-merge problems 2021-01-30 17:19:46 +07:00
Iaroslav Postovalov
70c0b614a3
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
#	examples/src/main/kotlin/kscience/kmath/operations/ComplexDemo.kt
#	examples/src/main/kotlin/kscience/kmath/structures/ComplexND.kt
#	kmath-complex/src/commonMain/kotlin/kscience/kmath/complex/ComplexNDField.kt
#	kmath-core/src/commonMain/kotlin/kscience/kmath/structures/NDAlgebra.kt
#	kmath-core/src/commonTest/kotlin/kscience/kmath/structures/NDFieldTest.kt
2021-01-29 17:00:57 +07:00
45866b500f Merge remote-tracking branch 'origin/dev' into refactor/ndalgebra
# Conflicts:
#	CHANGELOG.md
#	examples/src/benchmarks/kotlin/kscience/kmath/benchmarks/LinearAlgebraBenchmark.kt
#	kmath-commons/src/main/kotlin/kscience/kmath/commons/linear/CMMatrix.kt
#	kmath-for-real/src/commonMain/kotlin/kscience/kmath/real/RealMatrix.kt
2021-01-28 20:07:43 +03:00
228c0b3886 misc 2021-01-28 20:04:33 +03:00
Iaroslav Postovalov
b20081f161
Fix capitalization of LUP related references (LUP -> Lup) 2021-01-24 22:12:43 +07:00
8a2f1586e2 suppress unused 2021-01-24 17:11:14 +03:00
aff7bbab41 Matrix performance optimization 2021-01-24 17:07:19 +03:00
3bbb39f30d cleanup parallel field example 2021-01-24 10:26:56 +03:00
9829a16a32 Optimize Real NDField 2021-01-24 10:15:16 +03:00
1cb41f4dc2 Optimize Real NDField 2021-01-23 22:16:27 +03:00
Iaroslav Postovalov
9342824c96
Merge branch 'dev' into feature/quaternion 2021-01-24 02:00:22 +07:00
Iaroslav Postovalov
9c77f8f02f
Remove incorrect lines 2021-01-24 01:59:42 +07:00
Iaroslav Postovalov
624460c52d
Merge branch 'dev' into feature/mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/stat/DistributionBenchmark.kt
#	kmath-core/src/commonMain/kotlin/kscience/kmath/structures/Structure2D.kt
2021-01-24 01:55:32 +07:00
332c04b573 [WIP] Refactor NDStructures 2021-01-23 19:19:13 +03:00
061398b009 [WIP] Refactor NDStructures 2021-01-22 23:22:24 +03:00
Iaroslav Postovalov
8019ac6802
Merge branch 'dev' into gsl-experiment 2021-01-20 16:52:29 +07:00
Iaroslav Postovalov
2d1d6c008e
Fix after-merge problems 2021-01-20 15:07:12 +07:00
d0c9d97706 Minor optimization for RealNDAlgebra 2021-01-19 22:29:19 +03:00
Iaroslav Postovalov
9748e0bfbe
Merge branch 'dev' into feature/quaternion
# Conflicts:
#	CHANGELOG.md
#	examples/src/main/kotlin/kscience/kmath/stat/DistributionBenchmark.kt
#	kmath-complex/src/commonMain/kotlin/kscience/kmath/complex/ComplexNDField.kt
#	kmath-core/src/commonMain/kotlin/kscience/kmath/operations/Complex.kt
#	kmath-core/src/commonTest/kotlin/kscience/kmath/structures/NDFieldTest.kt
2021-01-20 01:10:31 +07:00
Iaroslav Postovalov
f711fe3d35
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	CHANGELOG.md
2021-01-20 00:34:19 +07:00
ab32cd9561 Numeric operations are decoupled from Ring 2021-01-19 17:16:43 +03:00
4635080317 Optimize RealMatrix dot operation 2021-01-18 21:33:53 +03:00
Iaroslav Postovalov
f5b6847bf6
Merge branch 'dev' into gsl-experiment 2021-01-07 22:46:53 +07:00
44ea32e843 Merge remote-tracking branch 'origin/dev' into dev 2021-01-07 18:07:26 +03:00
b288704528 Optimize RealMatrix dot operation 2021-01-07 18:07:00 +03:00
Iaroslav Postovalov
5d855bd915
Merge branch 'dev' into gsl-experiment 2021-01-06 21:09:07 +07:00
Iaroslav Postovalov
acf9dd2b6a
Extract complex and quaternion systems to another module 2021-01-06 21:01:37 +07:00
Iaroslav Postovalov
2f11660439
Replace Distribution.normal with NormalDistribution 2020-12-12 21:03:28 +07:00
Iaroslav Postovalov
e43aad33fe
Add missing import 2020-12-12 17:13:14 +07:00
Iaroslav Postovalov
5c54640e60
Merge branch 'dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/stat/DistributionDemo.kt
#	kmath-stat/src/jvmMain/kotlin/kscience/kmath/stat/distributions.kt
2020-12-12 17:11:09 +07:00
Iaroslav Postovalov
f001389f4c
Merge branch 'dev' into feature/dynamic-ops-currying
# Conflicts:
#	kmath-core/src/commonMain/kotlin/kscience/kmath/linear/MatrixContext.kt
2020-12-08 15:12:52 +07:00
Iaroslav Postovalov
e62cf4fc65
Rewrite ASM codegen to use curried operators, fix bugs, update benchmarks 2020-12-08 14:42:42 +07:00
Iaroslav Postovalov
0e8f6e29ee
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	kmath-core/src/commonMain/kotlin/kscience/kmath/linear/MatrixContext.kt
#	kmath-ejml/src/main/kotlin/kscience/kmath/ejml/EjmlMatrixContext.kt
2020-12-02 09:21:25 +07:00
712df04170 Implemented #131 2020-12-01 21:21:56 +03:00
89c0d863d2 Benchmark refactoring 2020-11-29 22:26:05 +03:00
625e624cab kmath-for-real refactoring 2020-11-29 21:38:12 +03:00
Iaroslav Postovalov
0db33cca55
Merge branch 'dev' into gsl-experiment 2020-11-30 00:56:35 +07:00
Iaroslav Postovalov
5a3fccb455
Add reference to Commons Math implementation of InternalErf, fix markdown issues, rename prob package in examples to stat 2020-11-29 22:02:06 +07:00
5b653f10d7 kmath-for-real refactoring 2020-11-29 13:32:20 +03:00
Iaroslav Postovalov
f18cd9ad40
Fix package names 2020-11-29 16:25:08 +07:00
Iaroslav Postovalov
e5d5ac17da
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	build.gradle.kts
#	examples/build.gradle.kts
#	examples/src/main/kotlin/kscience/kmath/ast/ExpressionsInterpretersBenchmark.kt
#	settings.gradle.kts
2020-11-29 01:17:16 +07:00
Iaroslav Postovalov
3c602e859d
Merge branch 'dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionBenchmark.kt
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionDemo.kt
#	kmath-commons/src/main/kotlin/kscience/kmath/commons/expressions/DiffExpression.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/distributions/NormalDistribution.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/internal/InternalErf.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/internal/InternalGamma.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/internal/InternalUtils.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/AhrensDieterExponentialSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/AhrensDieterMarsagliaTsangGammaSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/AliasMethodDiscreteSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/BoxMullerNormalizedGaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/GaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/KempSmallMeanPoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/LargeMeanPoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/MarsagliaNormalizedGaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/NormalizedGaussianSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/PoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/SmallMeanPoissonSampler.kt
#	kmath-stat/src/commonMain/kotlin/kscience/kmath/stat/samplers/ZigguratNormalizedGaussianSampler.kt
#	kmath-stat/src/jvmMain/kotlin/kscience/kmath/stat/distributions.kt
2020-11-02 01:16:29 +07:00
Iaroslav Postovalov
33d23c8d28
Duplicate repositories declared in main build script, fix errors 2020-11-02 01:08:55 +07:00
Iaroslav Postovalov
6b71d8525d
Merge branch 'dev' into kotlingrad
# Conflicts:
#	examples/build.gradle.kts
#	examples/src/main/kotlin/kscience/kmath/ast/ExpressionsInterpretersBenchmark.kt
2020-10-30 19:08:50 +07:00
Iaroslav Postovalov
d14e437659
Update DifferentiableExpression by providing second type argument representing the result of differentiation 2020-10-30 16:57:19 +07:00
Iaroslav Postovalov
ef7066b8c9
Update example 2020-10-30 16:40:58 +07:00
Iaroslav Postovalov
bc4eb95ae7
Add extension functions for DifferentiableMstExpression 2020-10-30 16:40:43 +07:00
Iaroslav Postovalov
29a670483b
Update KG and Maven repos, delete symbol delegate provider, implement working differentiable mst expression based on SFun shape to MST conversion 2020-10-30 01:09:11 +07:00
Iaroslav Postovalov
095b165fa4
Uncomment expressions benchmark, and add factory methods for Nd4jRing and Nd4jField 2020-10-29 23:59:36 +07:00
Iaroslav Postovalov
1e1819ac78
Merge branch 'dev' into gsl-experiment
# Conflicts:
#	build.gradle.kts
#	settings.gradle.kts
2020-10-29 15:47:09 +07:00
Iaroslav Postovalov
7f8abbdd20
Fix typo, introduce KG protocol delegating to algebra 2020-10-29 02:22:34 +07:00
Iaroslav Postovalov
2b7803290f
Merge branch 'dev' into kotlingrad
# Conflicts:
#	settings.gradle.kts
2020-10-28 18:37:21 +07:00
Iaroslav Postovalov
55909aee0d
Add additional constructor 2020-10-28 18:36:00 +07:00
dfa1bcaf01 prob renamed to stat 2020-10-28 09:16:21 +03:00
Iaroslav Postovalov
612f6f0082
Refactor, remove unused files, remove BasicSampler 2020-10-16 16:49:47 +07:00
e44423192d Tools version update 2020-10-13 20:34:17 +03:00
Iaroslav Postovalov
381137724d
Rename KG module 2020-10-13 19:47:07 +07:00
Iaroslav Postovalov
4bf430b2c0
Rename converter functions, add symbol delegate provider for MstAlgebra 2020-10-12 23:17:54 +07:00
Iaroslav Postovalov
54069fd37e
Add example of new AST API 2020-10-12 22:42:34 +07:00
Iaroslav Postovalov
abcde808dc
Add first working test, use kotlinx-io fork, major rework of GSL API 2020-10-04 20:17:44 +07:00
Iaroslav Postovalov
9e277a7de3
Minor changes related to benchmarks and EJML matrix, add GSL module, add wrapper for gsl_matrix, provide headers of gsl, configure cinterop at least for Linux and OSX, update GitHub Actions workflow 2020-10-04 12:45:35 +07:00
Iaroslav Postovalov
26d81bddb5
Merge remote-tracking branch 'origin/dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionBenchmark.kt
2020-10-02 01:35:55 +07:00
Iaroslav Postovalov
0e6448cd3e
Merge pull request #136 from mipt-npm/ejml
Drop koma module, implement kmath-ejml module copying it, but for EJML SimpleMatrix
2020-10-02 01:30:39 +07:00
Iaroslav Postovalov
254ee9eced
Merge remote-tracking branch 'origin/dev' into even-more-docs 2020-10-01 20:59:34 +07:00
049ac89667 More informative toString for NDBuffer and Complex 2020-09-30 12:30:06 +03:00
Iaroslav Postovalov
c97f81b277
Merge remote-tracking branch 'origin/dev' into even-more-docs
# Conflicts:
#	build.gradle.kts
#	kmath-core/src/commonMain/kotlin/kscience/kmath/operations/Complex.kt
#	kmath-memory/src/commonMain/kotlin/kscience/kmath/memory/Memory.kt
#	kmath-memory/src/commonMain/kotlin/kscience/kmath/memory/MemorySpec.kt
#	kmath-memory/src/commonMain/kotlin/kscience/memory/Memory.kt
#	kmath-memory/src/commonMain/kotlin/kscience/memory/MemorySpec.kt
#	kmath-memory/src/commonMain/kotlin/scientifik/memory/Memory.kt
#	kmath-memory/src/commonMain/kotlin/scientifik/memory/MemorySpec.kt
#	kmath-memory/src/jsMain/kotlin/kscience/kmath/memory/DataViewMemory.kt
#	kmath-memory/src/jsMain/kotlin/kscience/memory/DataViewMemory.kt
#	kmath-memory/src/jsMain/kotlin/scientifik/memory/DataViewMemory.kt
#	kmath-memory/src/jvmMain/kotlin/kscience/kmath/memory/ByteBufferMemory.kt
#	kmath-memory/src/jvmMain/kotlin/kscience/memory/ByteBufferMemory.kt
#	kmath-memory/src/jvmMain/kotlin/scientifik/memory/ByteBufferMemory.kt
2020-09-28 03:10:24 +07:00
Iaroslav Postovalov
b665a3a2fc
Merge remote-tracking branch 'origin/dev' into mp-samplers 2020-09-28 03:02:48 +07:00
Iaroslav Postovalov
6dcb01ecf1
Merge remote-tracking branch 'origin/dev' into ejml
# Conflicts:
#	CHANGELOG.md
#	doc/features.md
#	examples/build.gradle.kts
2020-09-28 03:00:07 +07:00
53ea704bae Finishing migration to 1.4.20-M1 2020-09-27 19:57:30 +03:00
Iaroslav Postovalov
b83293a057
Update example 2020-09-27 15:52:18 +07:00
Iaroslav Postovalov
e35a364aa8
Merge remote-tracking branch 'origin/dev' into mp-samplers
# Conflicts:
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionBenchmark.kt
#	examples/src/main/kotlin/kscience/kmath/commons/prob/DistributionDemo.kt
#	kmath-coroutines/src/commonMain/kotlin/kscience/kmath/chains/Chain.kt
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/BlockingIntChain.kt
#	kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/BlockingRealChain.kt
#	kmath-prob/build.gradle.kts
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/Distribution.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/AhrensDieterExponentialSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/AhrensDieterMarsagliaTsangGammaSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/AliasMethodDiscreteSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/BoxMullerNormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/GaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/InternalGamma.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/InternalUtils.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/KempSmallMeanPoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/LargeMeanPoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/MarsagliaNormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/NormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/PoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/SmallMeanPoissonSampler.kt
#	kmath-prob/src/commonMain/kotlin/kscience/kmath/prob/samplers/ZigguratNormalizedGaussianSampler.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/FactorizedDistribution.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/RandomChain.kt
#	kmath-prob/src/commonMain/kotlin/scientifik/kmath/prob/RandomGenerator.kt
#	kmath-prob/src/jvmMain/kotlin/kscience/kmath/prob/distributions.kt
#	kmath-prob/src/jvmMain/kotlin/scientifik/kmath/prob/RandomSourceGenerator.kt
2020-09-27 14:54:20 +07:00
Iaroslav Postovalov
940fabfac2
Add more KDoc comments, fix grammar issue 2020-09-27 14:50:07 +07:00
Iaroslav
12b599fff2
Fix some packaging issues, add some KDoc comments, minor refactor 2020-09-23 21:15:54 +07:00
Iaroslav
86793d6fac
Fix package 2020-09-21 20:56:30 +07:00
Iaroslav
029f534cc2
Merge remote-tracking branch 'origin/dev' into ejml
# Conflicts:
#	CHANGELOG.md
#	README.md
#	examples/build.gradle.kts
#	examples/src/main/kotlin/scientifik/kmath/linear/LinearAlgebraBenchmark.kt
#	examples/src/main/kotlin/scientifik/kmath/linear/MultiplicationBenchmark.kt
#	kmath-core/src/commonMain/kotlin/kscience/kmath/linear/MatrixContext.kt
2020-09-21 18:55:47 +07:00
28190f9800 scientifik -> kscience 2020-09-20 22:39:27 +03:00
5032523bbf Merge remote-tracking branch 'origin/dev' into dev
# Conflicts:
#	build.gradle.kts
#	examples/src/main/kotlin/scientifik/kmath/linear/LinearAlgebraBenchmark.kt
#	kmath-ast/build.gradle.kts
#	kmath-ast/src/commonMain/kotlin/scientifik/kmath/ast/MstAlgebra.kt
#	kmath-commons/build.gradle.kts
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/misc/AutoDiff.kt
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/operations/Complex.kt
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/structures/Buffers.kt
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/structures/FlaggedBuffer.kt
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/structures/IntBuffer.kt
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/structures/RealBuffer.kt
#	kmath-core/src/commonMain/kotlin/scientifik/kmath/structures/ShortBuffer.kt
#	kmath-for-real/build.gradle.kts
#	kmath-functions/build.gradle.kts
#	kmath-memory/build.gradle.kts
#	kmath-prob/build.gradle.kts
2020-09-20 21:59:10 +03:00