Finishing fixes

This commit is contained in:
Alexander Nozik 2024-02-17 21:32:26 +03:00
parent 7d88fb0166
commit f8e91c2402
69 changed files with 548 additions and 449 deletions

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@ -20,9 +20,11 @@
- Kmath-memory is moved on top of core. - Kmath-memory is moved on top of core.
### Deprecated ### Deprecated
- ND4J engine
### Removed ### Removed
- `asPolynomial` function due to scope pollution - `asPolynomial` function due to scope pollution
- Codegend for ejml (450 lines of codegen for 1000 lines of code is too much)
### Fixed ### Fixed
- Median statistics - Median statistics

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@ -99,7 +99,7 @@ class ExpressionsInterpretersBenchmark {
private val estree = node.estreeCompileToExpression(Float64Field) private val estree = node.estreeCompileToExpression(Float64Field)
private val raw = Expression<Double> { args -> private val raw = Expression<Double> { args ->
val x = args[x]!! val x = args.getValue(x)
x * 2.0 + 2.0 / x - 16.0 / sin(x) x * 2.0 + 2.0 / x - 16.0 / sin(x)
} }
} }

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@ -13,10 +13,7 @@ import space.kscience.kmath.expressions.autodiff
import space.kscience.kmath.expressions.symbol import space.kscience.kmath.expressions.symbol
import space.kscience.kmath.operations.asIterable import space.kscience.kmath.operations.asIterable
import space.kscience.kmath.operations.toList import space.kscience.kmath.operations.toList
import space.kscience.kmath.optimization.FunctionOptimizationTarget import space.kscience.kmath.optimization.*
import space.kscience.kmath.optimization.optimizeWith
import space.kscience.kmath.optimization.result
import space.kscience.kmath.optimization.resultValue
import space.kscience.kmath.random.RandomGenerator import space.kscience.kmath.random.RandomGenerator
import space.kscience.kmath.real.DoubleVector import space.kscience.kmath.real.DoubleVector
import space.kscience.kmath.real.map import space.kscience.kmath.real.map
@ -80,8 +77,9 @@ suspend fun main() {
val result = chi2.optimizeWith( val result = chi2.optimizeWith(
CMOptimizer, CMOptimizer,
mapOf(a to 1.5, b to 0.9, c to 1.0), mapOf(a to 1.5, b to 0.9, c to 1.0),
FunctionOptimizationTarget.MINIMIZE ){
) FunctionOptimizationTarget(OptimizationDirection.MINIMIZE)
}
//display a page with plot and numerical results //display a page with plot and numerical results
val page = Plotly.page { val page = Plotly.page {

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@ -7,6 +7,7 @@ package space.kscience.kmath.fit
import kotlinx.html.br import kotlinx.html.br
import kotlinx.html.h3 import kotlinx.html.h3
import space.kscience.attributes.Attributes
import space.kscience.kmath.data.XYErrorColumnarData import space.kscience.kmath.data.XYErrorColumnarData
import space.kscience.kmath.distributions.NormalDistribution import space.kscience.kmath.distributions.NormalDistribution
import space.kscience.kmath.expressions.Symbol import space.kscience.kmath.expressions.Symbol
@ -64,7 +65,7 @@ suspend fun main() {
QowOptimizer, QowOptimizer,
Double.autodiff, Double.autodiff,
mapOf(a to 0.9, b to 1.2, c to 2.0, e to 1.0, d to 1.0, e to 0.0), mapOf(a to 0.9, b to 1.2, c to 2.0, e to 1.0, d to 1.0, e to 0.0),
OptimizationParameters(a, b, c, d) attributes = Attributes(OptimizationParameters, listOf(a, b, c, d))
) { arg -> ) { arg ->
//bind variables to autodiff context //bind variables to autodiff context
val a by binding val a by binding

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@ -8,7 +8,6 @@ package space.kscience.kmath.functions
import space.kscience.kmath.interpolation.SplineInterpolator import space.kscience.kmath.interpolation.SplineInterpolator
import space.kscience.kmath.interpolation.interpolatePolynomials import space.kscience.kmath.interpolation.interpolatePolynomials
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.structures.Float64Buffer
import space.kscience.plotly.Plotly import space.kscience.plotly.Plotly
import space.kscience.plotly.UnstablePlotlyAPI import space.kscience.plotly.UnstablePlotlyAPI
import space.kscience.plotly.makeFile import space.kscience.plotly.makeFile
@ -24,9 +23,7 @@ fun main() {
x to sin(x) x to sin(x)
} }
val polynomial: PiecewisePolynomial<Double> = SplineInterpolator( val polynomial: PiecewisePolynomial<Double> = SplineInterpolator(Float64Field).interpolatePolynomials(data)
Float64Field, ::Float64Buffer
).interpolatePolynomials(data)
val function = polynomial.asFunction(Float64Field, 0.0) val function = polynomial.asFunction(Float64Field, 0.0)

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@ -8,7 +8,7 @@
package space.kscience.kmath.structures package space.kscience.kmath.structures
import space.kscience.kmath.complex.* import space.kscience.kmath.complex.*
import space.kscience.kmath.linear.transpose import space.kscience.kmath.linear.transposed
import space.kscience.kmath.nd.StructureND import space.kscience.kmath.nd.StructureND
import space.kscience.kmath.nd.as2D import space.kscience.kmath.nd.as2D
import space.kscience.kmath.nd.ndAlgebra import space.kscience.kmath.nd.ndAlgebra
@ -60,7 +60,7 @@ fun complexExample() {
val sum = matrix + x + 1.0 val sum = matrix + x + 1.0
//Represent the sum as 2d-structure and transpose //Represent the sum as 2d-structure and transpose
sum.as2D().transpose() sum.as2D().transposed()
} }
} }
} }

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@ -7,6 +7,7 @@ package space.kscience.kmath.structures
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.* import space.kscience.kmath.nd.*
import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.ExtendedField import space.kscience.kmath.operations.ExtendedField
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.operations.NumbersAddOps import space.kscience.kmath.operations.NumbersAddOps

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@ -6,20 +6,18 @@
package space.kscience.kmath.structures package space.kscience.kmath.structures
import space.kscience.kmath.nd.BufferND import space.kscience.kmath.nd.BufferND
import space.kscience.kmath.nd.ShapeND
import space.kscience.kmath.nd.StructureND
import space.kscience.kmath.operations.mapToBuffer import space.kscience.kmath.operations.mapToBuffer
import kotlin.system.measureTimeMillis import kotlin.system.measureTimeMillis
private inline fun <T, reified R : Any> BufferND<T>.mapToBufferND( private inline fun <T, reified R : Any> BufferND<T>.mapToBufferND(
bufferFactory: BufferFactory<R> = BufferFactory.auto(), bufferFactory: BufferFactory<R> = BufferFactory(),
crossinline block: (T) -> R, crossinline block: (T) -> R,
): BufferND<R> = BufferND(indices, buffer.mapToBuffer(bufferFactory, block)) ): BufferND<R> = BufferND(indices, buffer.mapToBuffer(bufferFactory, block))
@Suppress("UNUSED_VARIABLE") @Suppress("UNUSED_VARIABLE")
fun main() { fun main() {
val n = 6000 val n = 6000
val structure = StructureND.buffered(ShapeND(n, n), Buffer.Companion::auto) { 1.0 } val structure = BufferND(n, n) { 1.0 }
structure.mapToBufferND { it + 1 } // warm-up structure.mapToBufferND { it + 1 } // warm-up
val time1 = measureTimeMillis { val res = structure.mapToBufferND { it + 1 } } val time1 = measureTimeMillis { val res = structure.mapToBufferND { it + 1 } }
println("Structure mapping finished in $time1 millis") println("Structure mapping finished in $time1 millis")

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@ -13,7 +13,7 @@ import space.kscience.kmath.operations.withSize
inline fun <reified R : Any> MutableBuffer.Companion.same( inline fun <reified R : Any> MutableBuffer.Companion.same(
n: Int, n: Int,
value: R value: R
): MutableBuffer<R> = auto(n) { value } ): MutableBuffer<R> = MutableBuffer(n) { value }
fun main() { fun main() {

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@ -7,16 +7,20 @@ package space.kscience.kmath.commons.linear
import org.apache.commons.math3.linear.* import org.apache.commons.math3.linear.*
import org.apache.commons.math3.linear.LUDecomposition import org.apache.commons.math3.linear.LUDecomposition
import org.apache.commons.math3.linear.SingularValueDecomposition
import space.kscience.attributes.SafeType import space.kscience.attributes.SafeType
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.* import space.kscience.kmath.linear.*
import space.kscience.kmath.linear.CholeskyDecomposition
import space.kscience.kmath.linear.QRDecomposition
import space.kscience.kmath.nd.Structure2D import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.nd.StructureAttribute import space.kscience.kmath.nd.StructureAttribute
import space.kscience.kmath.operations.DoubleField import space.kscience.kmath.operations.DoubleField
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.structures.Buffer import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.Float64Buffer import space.kscience.kmath.structures.Float64
import kotlin.reflect.cast import space.kscience.kmath.structures.IntBuffer
import space.kscience.kmath.structures.asBuffer
public class CMMatrix(public val origin: RealMatrix) : Matrix<Double> { public class CMMatrix(public val origin: RealMatrix) : Matrix<Double> {
override val type: SafeType<Double> get() = DoubleField.type override val type: SafeType<Double> get() = DoubleField.type
@ -109,45 +113,44 @@ public object CMLinearSpace : LinearSpace<Double, Float64Field> {
val origin = structure.toCM().origin val origin = structure.toCM().origin
return when (attribute) { val raw: Any? = when (attribute) {
IsDiagonal -> if (origin is DiagonalMatrix) IsDiagonal else null IsDiagonal -> if (origin is DiagonalMatrix) Unit else null
Determinant -> LUDecomposition(origin).determinant Determinant -> LUDecomposition(origin).determinant
LUP -> GenericLupDecomposition {
private val lup by lazy { LUDecomposition(origin) } LUP -> object : LupDecomposition<Float64> {
override val determinant: Double by lazy { lup.determinant } val lup by lazy { LUDecomposition(origin) }
override val l: Matrix<Double> by lazy<Matrix<Double>> { CMMatrix(lup.l).withAttribute(LowerTriangular) } override val pivot: IntBuffer get() = lup.pivot.asBuffer()
override val u: Matrix<Double> by lazy<Matrix<Double>> { CMMatrix(lup.u).withAttribute(UpperTriangular) } override val l: Matrix<Float64> get() = lup.l.wrap()
override val p: Matrix<Double> by lazy { CMMatrix(lup.p) } override val u: Matrix<Float64> get() = lup.u.wrap()
} }
CholeskyDecompositionAttribute -> object : CholeskyDecompositionAttribute<Double> { Cholesky -> object : CholeskyDecomposition<Float64> {
override val l: Matrix<Double> by lazy<Matrix<Double>> { val cmCholesky by lazy { org.apache.commons.math3.linear.CholeskyDecomposition(origin) }
val cholesky = CholeskyDecomposition(origin) override val l: Matrix<Double> get() = cmCholesky.l.wrap()
CMMatrix(cholesky.l).withAttribute(LowerTriangular)
}
} }
QRDecompositionAttribute -> object : QRDecompositionAttribute<Double> { QR -> object : QRDecomposition<Float64> {
private val qr by lazy { QRDecomposition(origin) } val cmQr by lazy { org.apache.commons.math3.linear.QRDecomposition(origin) }
override val q: Matrix<Double> by lazy<Matrix<Double>> { override val q: Matrix<Float64> get() = cmQr.q.wrap().withAttribute(OrthogonalAttribute)
CMMatrix(qr.q).withAttribute( override val r: Matrix<Float64> get() = cmQr.r.wrap().withAttribute(UpperTriangular)
OrthogonalAttribute
)
}
override val r: Matrix<Double> by lazy<Matrix<Double>> { CMMatrix(qr.r).withAttribute(UpperTriangular) }
} }
SVDAttribute -> object : SVDAttribute<Double> { SVD -> object : space.kscience.kmath.linear.SingularValueDecomposition<Float64> {
private val sv by lazy { SingularValueDecomposition(origin) } val cmSvd by lazy { SingularValueDecomposition(origin) }
override val u: Matrix<Double> by lazy { CMMatrix(sv.u) }
override val s: Matrix<Double> by lazy { CMMatrix(sv.s) } override val u: Matrix<Float64> get() = cmSvd.u.wrap()
override val v: Matrix<Double> by lazy { CMMatrix(sv.v) } override val s: Matrix<Float64> get() = cmSvd.s.wrap()
override val singularValues: Point<Double> by lazy { Float64Buffer(sv.singularValues) } override val v: Matrix<Float64> get() = cmSvd.v.wrap()
override val singularValues: Point<Float64> get() = cmSvd.singularValues.asBuffer()
} }
else -> null else -> null
}?.let(type::cast)
} }
@Suppress("UNCHECKED_CAST")
return raw as V?
}
} }
public operator fun CMMatrix.plus(other: CMMatrix): CMMatrix = CMMatrix(origin.add(other.origin)) public operator fun CMMatrix.plus(other: CMMatrix): CMMatrix = CMMatrix(origin.add(other.origin))

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@ -3,6 +3,7 @@
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file. * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/ */
@file:OptIn(UnstableKMathAPI::class) @file:OptIn(UnstableKMathAPI::class)
package space.kscience.kmath.commons.optimization package space.kscience.kmath.commons.optimization
import org.apache.commons.math3.optim.* import org.apache.commons.math3.optim.*
@ -20,7 +21,6 @@ import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.expressions.SymbolIndexer import space.kscience.kmath.expressions.SymbolIndexer
import space.kscience.kmath.expressions.derivative import space.kscience.kmath.expressions.derivative
import space.kscience.kmath.expressions.withSymbols import space.kscience.kmath.expressions.withSymbols
import space.kscience.kmath.misc.log
import space.kscience.kmath.optimization.* import space.kscience.kmath.optimization.*
import kotlin.collections.set import kotlin.collections.set
import kotlin.reflect.KClass import kotlin.reflect.KClass
@ -118,21 +118,24 @@ public object CMOptimizer : Optimizer<Double, FunctionOptimization<Double>> {
val logger = problem.attributes[OptimizationLog] val logger = problem.attributes[OptimizationLog]
for (feature in problem.attributes) { problem.attributes[CMOptimizerData]?.let { builders: Set<SymbolIndexer.() -> OptimizationData> ->
when (feature) { builders.forEach { dataBuilder ->
is CMOptimizerData -> feature.data.forEach { dataBuilder ->
addOptimizationData(dataBuilder()) addOptimizationData(dataBuilder())
} }
is FunctionOptimizationTarget -> when (feature) {
FunctionOptimizationTarget.MAXIMIZE -> addOptimizationData(GoalType.MAXIMIZE)
FunctionOptimizationTarget.MINIMIZE -> addOptimizationData(GoalType.MINIMIZE)
} }
else -> logger?.log { "The feature $feature is unused in optimization" }
problem.attributes[FunctionOptimizationTarget]?.let { direction: OptimizationDirection ->
when (direction) {
OptimizationDirection.MAXIMIZE -> addOptimizationData(GoalType.MAXIMIZE)
OptimizationDirection.MINIMIZE -> addOptimizationData(GoalType.MINIMIZE)
} }
} }
val (point, value) = cmOptimizer.optimize(*optimizationData.values.toTypedArray()) val (point, value) = cmOptimizer.optimize(*optimizationData.values.toTypedArray())
return problem.withAttributes(OptimizationResult(point.toMap()), OptimizationValue(value)) return problem.withAttributes {
result(point.toMap())
value(value)
}
} }
} }
} }

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@ -7,6 +7,8 @@ package space.kscience.kmath.commons.integration
import org.junit.jupiter.api.Test import org.junit.jupiter.api.Test
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.integration.IntegrandAbsoluteAccuracy
import space.kscience.kmath.integration.IntegrandRelativeAccuracy
import space.kscience.kmath.integration.integrate import space.kscience.kmath.integration.integrate
import space.kscience.kmath.integration.value import space.kscience.kmath.integration.value
import space.kscience.kmath.operations.Float64Field.sin import space.kscience.kmath.operations.Float64Field.sin
@ -27,8 +29,8 @@ internal class IntegrationTest {
@Test @Test
fun customSimpson() { fun customSimpson() {
val res = CMIntegrator.simpson().integrate(0.0..PI, { val res = CMIntegrator.simpson().integrate(0.0..PI, {
targetRelativeAccuracy = 1e-4 IntegrandRelativeAccuracy(1e-4)
targetAbsoluteAccuracy = 1e-4 IntegrandAbsoluteAccuracy(1e-4)
}, function).value }, function).value
assertTrue { abs(res - 2) < 1e-3 } assertTrue { abs(res - 2) < 1e-3 }
assertTrue { abs(res - 2) > 1e-12 } assertTrue { abs(res - 2) > 1e-12 }

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@ -73,8 +73,9 @@ internal class OptimizeTest {
val result: FunctionOptimization<Double> = chi2.optimizeWith( val result: FunctionOptimization<Double> = chi2.optimizeWith(
CMOptimizer, CMOptimizer,
mapOf(a to 1.5, b to 0.9, c to 1.0), mapOf(a to 1.5, b to 0.9, c to 1.0),
FunctionOptimizationTarget.MINIMIZE ){
) FunctionOptimizationTarget(OptimizationDirection.MINIMIZE)
}
println(result) println(result)
println("Chi2/dof = ${result.resultValue / (x.size - 3)}") println("Chi2/dof = ${result.resultValue / (x.size - 3)}")
} }

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@ -7,6 +7,7 @@ package space.kscience.kmath.expressions
import space.kscience.attributes.SafeType import space.kscience.attributes.SafeType
import space.kscience.attributes.WithType import space.kscience.attributes.WithType
import space.kscience.attributes.safeTypeOf
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.Algebra import space.kscience.kmath.operations.Algebra
import space.kscience.kmath.operations.DoubleField import space.kscience.kmath.operations.DoubleField
@ -30,12 +31,18 @@ public interface Expression<T> : WithType<T> {
public operator fun invoke(arguments: Map<Symbol, T>): T public operator fun invoke(arguments: Map<Symbol, T>): T
} }
/**
* Create an expression from a functional block.
*/
public fun <T> Expression(type: SafeType<T>, block: (Map<Symbol, T>) -> T): Expression<T> = object : Expression<T> { public fun <T> Expression(type: SafeType<T>, block: (Map<Symbol, T>) -> T): Expression<T> = object : Expression<T> {
override fun invoke(arguments: Map<Symbol, T>): T = block(arguments) override fun invoke(arguments: Map<Symbol, T>): T = block(arguments)
override val type: SafeType<T> = type override val type: SafeType<T> = type
} }
public inline fun <reified T> Expression(noinline block: (Map<Symbol, T>) -> T): Expression<T> =
Expression(safeTypeOf<T>(), block)
/** /**
* Specialization of [Expression] for [Double] allowing better performance because of using array. * Specialization of [Expression] for [Double] allowing better performance because of using array.
*/ */

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@ -15,14 +15,19 @@ import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.* import space.kscience.kmath.structures.*
public interface LupDecomposition<T> { public interface LupDecomposition<T> {
public val linearSpace: LinearSpace<T, Field<T>>
public val elementAlgebra: Field<T> get() = linearSpace.elementAlgebra
public val pivot: IntBuffer public val pivot: IntBuffer
public val l: Matrix<T> public val l: Matrix<T>
public val u: Matrix<T> public val u: Matrix<T>
} }
/**
* Create a pivot matrix from pivot vector using provided [LinearSpace]
*/
public fun <T> LupDecomposition<T>.pivotMatrix(linearSpace: LinearSpace<T, Ring<T>>): Matrix<T> =
VirtualMatrix(linearSpace.type, l.rowNum, l.colNum) { row, column ->
if (column == pivot[row]) linearSpace.elementAlgebra.one else linearSpace.elementAlgebra.zero
}
/** /**
* Matrices with this feature support LU factorization with partial pivoting: *[p] &middot; a = [l] &middot; [u]* where * Matrices with this feature support LU factorization with partial pivoting: *[p] &middot; a = [l] &middot; [u]* where
* *a* is the owning matrix. * *a* is the owning matrix.
@ -31,12 +36,14 @@ public interface LupDecomposition<T> {
* @param lu combined L and U matrix * @param lu combined L and U matrix
*/ */
public class GenericLupDecomposition<T>( public class GenericLupDecomposition<T>(
override val linearSpace: LinearSpace<T, Field<T>>, public val linearSpace: LinearSpace<T, Field<T>>,
private val lu: Matrix<T>, private val lu: Matrix<T>,
override val pivot: IntBuffer, override val pivot: IntBuffer,
private val even: Boolean, private val even: Boolean,
) : LupDecomposition<T> { ) : LupDecomposition<T> {
private val elementAlgebra get() = linearSpace.elementAlgebra
override val l: Matrix<T> override val l: Matrix<T>
get() = VirtualMatrix(lu.type, lu.rowNum, lu.colNum, attributes = Attributes(LowerTriangular)) { i, j -> get() = VirtualMatrix(lu.type, lu.rowNum, lu.colNum, attributes = Attributes(LowerTriangular)) { i, j ->
when { when {
@ -51,11 +58,6 @@ public class GenericLupDecomposition<T>(
if (j >= i) lu[i, j] else elementAlgebra.zero if (j >= i) lu[i, j] else elementAlgebra.zero
} }
public val pivotMatrix: Matrix<T>
get() = VirtualMatrix(linearSpace.type, l.rowNum, l.colNum) { row, column ->
if (column == pivot[row]) elementAlgebra.one else elementAlgebra.zero
}
public val determinant: T by lazy { public val determinant: T by lazy {
elementAlgebra { (0 until l.shape[0]).fold(if (even) one else -one) { value, i -> value * lu[i, i] } } elementAlgebra { (0 until l.shape[0]).fold(if (even) one else -one) { value, i -> value * lu[i, i] } }
} }
@ -79,7 +81,7 @@ internal fun <T : Comparable<T>> LinearSpace<T, Ring<T>>.abs(value: T): T =
public fun <T : Comparable<T>> LinearSpace<T, Field<T>>.lup( public fun <T : Comparable<T>> LinearSpace<T, Field<T>>.lup(
matrix: Matrix<T>, matrix: Matrix<T>,
checkSingular: (T) -> Boolean, checkSingular: (T) -> Boolean,
): LupDecomposition<T> = elementAlgebra { ): GenericLupDecomposition<T> = elementAlgebra {
require(matrix.rowNum == matrix.colNum) { "LU decomposition supports only square matrices" } require(matrix.rowNum == matrix.colNum) { "LU decomposition supports only square matrices" }
val m = matrix.colNum val m = matrix.colNum
val pivot = IntArray(matrix.rowNum) val pivot = IntArray(matrix.rowNum)
@ -156,7 +158,7 @@ public fun <T : Comparable<T>> LinearSpace<T, Field<T>>.lup(
public fun LinearSpace<Double, Float64Field>.lup( public fun LinearSpace<Double, Float64Field>.lup(
matrix: Matrix<Double>, matrix: Matrix<Double>,
singularityThreshold: Double = 1e-11, singularityThreshold: Double = 1e-11,
): LupDecomposition<Double> = lup(matrix) { it < singularityThreshold } ): GenericLupDecomposition<Double> = lup(matrix) { it < singularityThreshold }
internal fun <T> LinearSpace<T, Field<T>>.solve( internal fun <T> LinearSpace<T, Field<T>>.solve(
lup: LupDecomposition<T>, lup: LupDecomposition<T>,

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@ -25,5 +25,4 @@ public class TransposedMatrix<T>(public val origin: Matrix<T>) : Matrix<T> {
/** /**
* Create a virtual transposed matrix without copying anything. `A.transpose().transpose() === A` * Create a virtual transposed matrix without copying anything. `A.transpose().transpose() === A`
*/ */
public val <T> Matrix<T>.transposed: Matrix<T> public fun <T> Matrix<T>.transposed(): Matrix<T> = (this as? TransposedMatrix<T>)?.origin ?: TransposedMatrix(this)
get() = (this as? TransposedMatrix<T>)?.origin ?: TransposedMatrix(this)

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@ -5,9 +5,11 @@
package space.kscience.kmath.nd package space.kscience.kmath.nd
import space.kscience.attributes.SafeType
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.* import space.kscience.kmath.operations.*
import space.kscience.kmath.structures.Float64
import space.kscience.kmath.structures.Float64Buffer import space.kscience.kmath.structures.Float64Buffer
import kotlin.contracts.InvocationKind import kotlin.contracts.InvocationKind
import kotlin.contracts.contract import kotlin.contracts.contract
@ -21,6 +23,9 @@ public class Float64BufferND(
indexes: ShapeIndexer, indexes: ShapeIndexer,
override val buffer: Float64Buffer, override val buffer: Float64Buffer,
) : MutableBufferND<Double>(indexes, buffer), MutableStructureNDOfDouble { ) : MutableBufferND<Double>(indexes, buffer), MutableStructureNDOfDouble {
override val type: SafeType<Float64> get() = Float64Field.type
override fun getDouble(index: IntArray): Double = buffer[indices.offset(index)] override fun getDouble(index: IntArray): Double = buffer[indices.offset(index)]
override fun setDouble(index: IntArray, value: Double) { override fun setDouble(index: IntArray, value: Double) {

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@ -5,9 +5,15 @@
package space.kscience.kmath.nd package space.kscience.kmath.nd
import space.kscience.attributes.SafeType
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.operations.Int32Field
import space.kscience.kmath.structures.Float64
public interface StructureNDOfDouble : StructureND<Double> { public interface StructureNDOfDouble : StructureND<Double> {
override val type: SafeType<Float64> get() = Float64Field.type
/** /**
* Guaranteed non-blocking access to content * Guaranteed non-blocking access to content
*/ */
@ -22,6 +28,7 @@ public fun StructureND<Double>.getDouble(index: IntArray): Double =
if (this is StructureNDOfDouble) getDouble(index) else get(index) if (this is StructureNDOfDouble) getDouble(index) else get(index)
public interface MutableStructureNDOfDouble : StructureNDOfDouble, MutableStructureND<Double> { public interface MutableStructureNDOfDouble : StructureNDOfDouble, MutableStructureND<Double> {
/** /**
* Guaranteed non-blocking access to content * Guaranteed non-blocking access to content
*/ */
@ -34,6 +41,9 @@ public fun MutableStructureND<Double>.getDouble(index: IntArray): Double =
public interface StructureNDOfInt : StructureND<Int> { public interface StructureNDOfInt : StructureND<Int> {
override val type: SafeType<Int> get() = Int32Field.type
/** /**
* Guaranteed non-blocking access to content * Guaranteed non-blocking access to content
*/ */

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@ -40,7 +40,7 @@ class DoubleLUSolverTest {
//Check determinant //Check determinant
assertEquals(7.0, lup.determinant) assertEquals(7.0, lup.determinant)
assertMatrixEquals(lup.pivotMatrix dot matrix, lup.l dot lup.u) assertMatrixEquals(lup.pivotMatrix(this) dot matrix, lup.l dot lup.u)
} }
@Test @Test

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@ -21,7 +21,7 @@ class MatrixTest {
@Test @Test
fun testTranspose() = Double.algebra.linearSpace.run { fun testTranspose() = Double.algebra.linearSpace.run {
val matrix = one(3, 3) val matrix = one(3, 3)
val transposed = matrix.transposed val transposed = matrix.transposed()
assertTrue { StructureND.contentEquals(matrix, transposed) } assertTrue { StructureND.contentEquals(matrix, transposed) }
} }

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@ -6,6 +6,7 @@ kscience {
jvm() jvm()
js() js()
native() native()
wasm()
dependencies { dependencies {
api(project(":kmath-core")) api(project(":kmath-core"))

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@ -7,6 +7,7 @@ package space.kscience.kmath.streaming
import kotlinx.coroutines.flow.* import kotlinx.coroutines.flow.*
import kotlinx.coroutines.runBlocking import kotlinx.coroutines.runBlocking
import space.kscience.kmath.operations.Int32Ring
import space.kscience.kmath.operations.asSequence import space.kscience.kmath.operations.asSequence
import kotlin.test.Test import kotlin.test.Test
import kotlin.test.assertEquals import kotlin.test.assertEquals
@ -14,7 +15,7 @@ import kotlin.test.assertEquals
internal class RingBufferTest { internal class RingBufferTest {
@Test @Test
fun push() { fun push() {
val buffer = RingBuffer.build(20, Double.NaN) val buffer = RingBuffer(20, Double.NaN)
runBlocking { runBlocking {
for (i in 1..30) { for (i in 1..30) {
buffer.push(i.toDouble()) buffer.push(i.toDouble())
@ -30,7 +31,7 @@ internal class RingBufferTest {
while (true) emit(i++) while (true) emit(i++)
} }
val windowed = flow.windowed(10) val windowed = flow.windowed(10, Int32Ring)
runBlocking { runBlocking {
@Suppress("UNUSED_VARIABLE") val first = windowed.take(1).single() @Suppress("UNUSED_VARIABLE") val first = windowed.take(1).single()

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@ -6,6 +6,7 @@ kscience{
jvm() jvm()
js() js()
native() native()
wasm()
dependencies{ dependencies{
api(projects.kmathCore) api(projects.kmathCore)

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@ -153,7 +153,7 @@ public value class DMatrixContext<T : Any, out A : Ring<T>>(public val context:
context.run { this@unaryMinus.unaryMinus() }.coerce() context.run { this@unaryMinus.unaryMinus() }.coerce()
public inline fun <reified R : Dimension, reified C : Dimension> DMatrix<T, C, R>.transposed(): DMatrix<T, R, C> = public inline fun <reified R : Dimension, reified C : Dimension> DMatrix<T, C, R>.transposed(): DMatrix<T, R, C> =
context.run { (this@transposed as Matrix<T>).transposed }.coerce() context.run { (this@transposed as Matrix<T>).transposed() }.coerce()
public companion object { public companion object {
public val real: DMatrixContext<Double, Float64Field> = DMatrixContext(Double.algebra.linearSpace) public val real: DMatrixContext<Double, Float64Field> = DMatrixContext(Double.algebra.linearSpace)

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@ -0,0 +1,23 @@
/*
* Copyright 2018-2024 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.dimensions
import kotlin.reflect.KClass
private val dimensionMap: MutableMap<Int, Dimension> = hashMapOf(1 to D1, 2 to D2, 3 to D3)
@Suppress("UNCHECKED_CAST")
public actual fun <D : Dimension> Dimension.Companion.resolve(type: KClass<D>): D = dimensionMap
.entries
.map(MutableMap.MutableEntry<Int, Dimension>::value)
.find { it::class == type } as? D
?: error("Can't resolve dimension $type")
public actual fun Dimension.Companion.of(dim: Int): Dimension = dimensionMap.getOrPut(dim) {
object : Dimension {
override val dim: Int get() = dim
}
}

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@ -1,15 +1,15 @@
import space.kscience.kmath.ejml.codegen.ejmlCodegen
plugins { plugins {
id("space.kscience.gradle.jvm") id("space.kscience.gradle.jvm")
} }
val ejmlVerision = "0.43.1"
dependencies { dependencies {
api("org.ejml:ejml-ddense:0.41") api("org.ejml:ejml-ddense:$ejmlVerision")
api("org.ejml:ejml-fdense:0.41") api("org.ejml:ejml-fdense:$ejmlVerision")
api("org.ejml:ejml-dsparse:0.41") api("org.ejml:ejml-dsparse:$ejmlVerision")
api("org.ejml:ejml-fsparse:0.41") api("org.ejml:ejml-fsparse:$ejmlVerision")
api(project(":kmath-core")) api(projects.kmathCore)
} }
readme { readme {
@ -32,10 +32,10 @@ readme {
) { "LinearSpace implementations." } ) { "LinearSpace implementations." }
} }
kotlin.sourceSets.main { //kotlin.sourceSets.main {
val codegen by tasks.creating { // val codegen by tasks.creating {
ejmlCodegen(kotlin.srcDirs.first().absolutePath + "/space/kscience/kmath/ejml/_generated.kt") // ejmlCodegen(kotlin.srcDirs.first().absolutePath + "/space/kscience/kmath/ejml/_generated.kt")
} // }
//
kotlin.srcDirs(files().builtBy(codegen)) // kotlin.srcDirs(files().builtBy(codegen))
} //}

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@ -17,21 +17,18 @@ import org.ejml.sparse.csc.CommonOps_DSCC
import org.ejml.sparse.csc.CommonOps_FSCC import org.ejml.sparse.csc.CommonOps_FSCC
import org.ejml.sparse.csc.factory.DecompositionFactory_DSCC import org.ejml.sparse.csc.factory.DecompositionFactory_DSCC
import org.ejml.sparse.csc.factory.DecompositionFactory_FSCC import org.ejml.sparse.csc.factory.DecompositionFactory_FSCC
import org.ejml.sparse.csc.factory.LinearSolverFactory_DSCC
import org.ejml.sparse.csc.factory.LinearSolverFactory_FSCC
import space.kscience.attributes.SafeType import space.kscience.attributes.SafeType
import space.kscience.attributes.safeTypeOf import space.kscience.attributes.safeTypeOf
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.linear.* import space.kscience.kmath.linear.*
import space.kscience.kmath.linear.Matrix import space.kscience.kmath.linear.Matrix
import space.kscience.kmath.nd.StructureFeature import space.kscience.kmath.nd.Structure2D
import space.kscience.kmath.nd.StructureAttribute
import space.kscience.kmath.operations.Float32Field import space.kscience.kmath.operations.Float32Field
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.operations.invoke import space.kscience.kmath.operations.invoke
import space.kscience.kmath.structures.DoubleBuffer import space.kscience.kmath.structures.Float32
import space.kscience.kmath.structures.FloatBuffer import space.kscience.kmath.structures.IntBuffer
import kotlin.reflect.KClass import space.kscience.kmath.structures.asBuffer
import kotlin.reflect.cast
/** /**
* [EjmlVector] specialization for [Double]. * [EjmlVector] specialization for [Double].
@ -78,7 +75,6 @@ public class EjmlFloatMatrix<out M : FMatrix>(override val origin: M) : EjmlMatr
} }
/** /**
* [EjmlLinearSpace] implementation based on [CommonOps_DDRM], [DecompositionFactory_DDRM] operations and * [EjmlLinearSpace] implementation based on [CommonOps_DDRM], [DecompositionFactory_DDRM] operations and
* [DMatrixRMaj] matrices. * [DMatrixRMaj] matrices.
@ -217,77 +213,65 @@ public object EjmlLinearSpaceDDRM : EjmlLinearSpace<Double, Float64Field, DMatri
override fun Double.times(v: Point<Double>): EjmlDoubleVector<DMatrixRMaj> = v * this override fun Double.times(v: Point<Double>): EjmlDoubleVector<DMatrixRMaj> = v * this
@UnstableKMathAPI override fun <V, A : StructureAttribute<V>> computeAttribute(structure: Structure2D<Double>, attribute: A): V? {
override fun <F : StructureFeature> computeFeature(structure: Matrix<Double>, type: KClass<out F>): F? {
structure.getFeature(type)?.let { return it }
val origin = structure.toEjml().origin val origin = structure.toEjml().origin
return when (type) { val raw: Any? = when (attribute) {
InverseMatrixFeature::class -> object : InverseMatrixFeature<Double> { Inverted -> {
override val inverse: Matrix<Double> by lazy {
val res = origin.copy() val res = origin.copy()
CommonOps_DDRM.invert(res) CommonOps_DDRM.invert(res)
res.wrapMatrix() res.wrapMatrix()
} }
}
DeterminantFeature::class -> object : DeterminantFeature<Double> { Determinant -> CommonOps_DDRM.det(origin)
override val determinant: Double by lazy { CommonOps_DDRM.det(origin) } SVD -> object : SingularValueDecomposition<Double> {
} val ejmlSvd by lazy {
DecompositionFactory_DDRM
SingularValueDecompositionFeature::class -> object : SingularValueDecompositionFeature<Double> { .svd(origin.numRows, origin.numCols, true, true, false)
private val svd by lazy {
DecompositionFactory_DDRM.svd(origin.numRows, origin.numCols, true, true, false)
.apply { decompose(origin.copy()) } .apply { decompose(origin.copy()) }
} }
override val u: Matrix<Double> get() = ejmlSvd.getU(null, false).wrapMatrix()
override val s: Matrix<Double> get() = ejmlSvd.getW(null).wrapMatrix()
override val v: Matrix<Double> get() = ejmlSvd.getV(null, false).wrapMatrix()
override val singularValues: Point<Double> get() = ejmlSvd.singularValues.asBuffer()
override val u: Matrix<Double> by lazy { svd.getU(null, false).wrapMatrix() }
override val s: Matrix<Double> by lazy { svd.getW(null).wrapMatrix() }
override val v: Matrix<Double> by lazy { svd.getV(null, false).wrapMatrix() }
override val singularValues: Point<Double> by lazy { DoubleBuffer(svd.singularValues) }
} }
QRDecompositionFeature::class -> object : QRDecompositionFeature<Double> { QR -> object : QRDecomposition<Double> {
private val qr by lazy { val ejmlQr by lazy { DecompositionFactory_DDRM.qr().apply { decompose(origin.copy()) } }
DecompositionFactory_DDRM.qr().apply { decompose(origin.copy()) } override val q: Matrix<Double> get() = ejmlQr.getQ(null, false).wrapMatrix()
override val r: Matrix<Double> get() = ejmlQr.getR(null, false).wrapMatrix()
} }
override val q: Matrix<Double> by lazy { Cholesky -> object : CholeskyDecomposition<Double> {
qr.getQ(null, false).wrapMatrix().withFeature(OrthogonalFeature)
}
override val r: Matrix<Double> by lazy { qr.getR(null, false).wrapMatrix().withFeature(UFeature) }
}
CholeskyDecompositionFeature::class -> object : CholeskyDecompositionFeature<Double> {
override val l: Matrix<Double> by lazy { override val l: Matrix<Double> by lazy {
val cholesky = val cholesky =
DecompositionFactory_DDRM.chol(structure.rowNum, true).apply { decompose(origin.copy()) } DecompositionFactory_DDRM.chol(structure.rowNum, true).apply { decompose(origin.copy()) }
cholesky.getT(null).wrapMatrix().withFeature(LFeature) cholesky.getT(null).wrapMatrix().withAttribute(LowerTriangular)
} }
} }
LupDecompositionFeature::class -> object : LupDecompositionFeature<Double> { LUP -> object : LupDecomposition<Double> {
private val lup by lazy { private val lup by lazy {
DecompositionFactory_DDRM.lu(origin.numRows, origin.numCols).apply { decompose(origin.copy()) } DecompositionFactory_DDRM.lu(origin.numRows, origin.numCols).apply { decompose(origin.copy()) }
} }
override val l: Matrix<Double> by lazy { override val l: Matrix<Double>
lup.getLower(null).wrapMatrix().withFeature(LFeature) get() = lup.getLower(null).wrapMatrix().withAttribute(LowerTriangular)
}
override val u: Matrix<Double> by lazy {
lup.getUpper(null).wrapMatrix().withFeature(UFeature)
}
override val p: Matrix<Double> by lazy { lup.getRowPivot(null).wrapMatrix() } override val u: Matrix<Double>
get() = lup.getUpper(null).wrapMatrix().withAttribute(UpperTriangular)
override val pivot: IntBuffer get() = lup.getRowPivotV(null).asBuffer()
} }
else -> null else -> null
}?.let{
type.cast(it)
} }
@Suppress("UNCHECKED_CAST")
return raw as V?
} }
/** /**
@ -318,7 +302,6 @@ public object EjmlLinearSpaceDDRM : EjmlLinearSpace<Double, Float64Field, DMatri
} }
/** /**
* [EjmlLinearSpace] implementation based on [CommonOps_FDRM], [DecompositionFactory_FDRM] operations and * [EjmlLinearSpace] implementation based on [CommonOps_FDRM], [DecompositionFactory_FDRM] operations and
* [FMatrixRMaj] matrices. * [FMatrixRMaj] matrices.
@ -457,77 +440,65 @@ public object EjmlLinearSpaceFDRM : EjmlLinearSpace<Float, Float32Field, FMatrix
override fun Float.times(v: Point<Float>): EjmlFloatVector<FMatrixRMaj> = v * this override fun Float.times(v: Point<Float>): EjmlFloatVector<FMatrixRMaj> = v * this
@UnstableKMathAPI override fun <V, A : StructureAttribute<V>> computeAttribute(structure: Structure2D<Float32>, attribute: A): V? {
override fun <F : StructureFeature> computeFeature(structure: Matrix<Float>, type: KClass<out F>): F? {
structure.getFeature(type)?.let { return it }
val origin = structure.toEjml().origin val origin = structure.toEjml().origin
return when (type) { val raw: Any? = when (attribute) {
InverseMatrixFeature::class -> object : InverseMatrixFeature<Float> { Inverted -> {
override val inverse: Matrix<Float> by lazy {
val res = origin.copy() val res = origin.copy()
CommonOps_FDRM.invert(res) CommonOps_FDRM.invert(res)
res.wrapMatrix() res.wrapMatrix()
} }
}
DeterminantFeature::class -> object : DeterminantFeature<Float> { Determinant -> CommonOps_FDRM.det(origin)
override val determinant: Float by lazy { CommonOps_FDRM.det(origin) } SVD -> object : SingularValueDecomposition<Float32> {
} val ejmlSvd by lazy {
DecompositionFactory_FDRM
SingularValueDecompositionFeature::class -> object : SingularValueDecompositionFeature<Float> { .svd(origin.numRows, origin.numCols, true, true, false)
private val svd by lazy {
DecompositionFactory_FDRM.svd(origin.numRows, origin.numCols, true, true, false)
.apply { decompose(origin.copy()) } .apply { decompose(origin.copy()) }
} }
override val u: Matrix<Float32> get() = ejmlSvd.getU(null, false).wrapMatrix()
override val s: Matrix<Float32> get() = ejmlSvd.getW(null).wrapMatrix()
override val v: Matrix<Float32> get() = ejmlSvd.getV(null, false).wrapMatrix()
override val singularValues: Point<Float32> get() = ejmlSvd.singularValues.asBuffer()
override val u: Matrix<Float> by lazy { svd.getU(null, false).wrapMatrix() }
override val s: Matrix<Float> by lazy { svd.getW(null).wrapMatrix() }
override val v: Matrix<Float> by lazy { svd.getV(null, false).wrapMatrix() }
override val singularValues: Point<Float> by lazy { FloatBuffer(svd.singularValues) }
} }
QRDecompositionFeature::class -> object : QRDecompositionFeature<Float> { QR -> object : QRDecomposition<Float32> {
private val qr by lazy { val ejmlQr by lazy { DecompositionFactory_FDRM.qr().apply { decompose(origin.copy()) } }
DecompositionFactory_FDRM.qr().apply { decompose(origin.copy()) } override val q: Matrix<Float32> get() = ejmlQr.getQ(null, false).wrapMatrix()
override val r: Matrix<Float32> get() = ejmlQr.getR(null, false).wrapMatrix()
} }
override val q: Matrix<Float> by lazy { Cholesky -> object : CholeskyDecomposition<Float32> {
qr.getQ(null, false).wrapMatrix().withFeature(OrthogonalFeature) override val l: Matrix<Float32> by lazy {
}
override val r: Matrix<Float> by lazy { qr.getR(null, false).wrapMatrix().withFeature(UFeature) }
}
CholeskyDecompositionFeature::class -> object : CholeskyDecompositionFeature<Float> {
override val l: Matrix<Float> by lazy {
val cholesky = val cholesky =
DecompositionFactory_FDRM.chol(structure.rowNum, true).apply { decompose(origin.copy()) } DecompositionFactory_FDRM.chol(structure.rowNum, true).apply { decompose(origin.copy()) }
cholesky.getT(null).wrapMatrix().withFeature(LFeature) cholesky.getT(null).wrapMatrix().withAttribute(LowerTriangular)
} }
} }
LupDecompositionFeature::class -> object : LupDecompositionFeature<Float> { LUP -> object : LupDecomposition<Float32> {
private val lup by lazy { private val lup by lazy {
DecompositionFactory_FDRM.lu(origin.numRows, origin.numCols).apply { decompose(origin.copy()) } DecompositionFactory_FDRM.lu(origin.numRows, origin.numCols).apply { decompose(origin.copy()) }
} }
override val l: Matrix<Float> by lazy { override val l: Matrix<Float32>
lup.getLower(null).wrapMatrix().withFeature(LFeature) get() = lup.getLower(null).wrapMatrix().withAttribute(LowerTriangular)
}
override val u: Matrix<Float> by lazy {
lup.getUpper(null).wrapMatrix().withFeature(UFeature)
}
override val p: Matrix<Float> by lazy { lup.getRowPivot(null).wrapMatrix() } override val u: Matrix<Float32>
get() = lup.getUpper(null).wrapMatrix().withAttribute(UpperTriangular)
override val pivot: IntBuffer get() = lup.getRowPivotV(null).asBuffer()
} }
else -> null else -> null
}?.let{
type.cast(it)
} }
@Suppress("UNCHECKED_CAST")
return raw as V?
} }
/** /**
@ -558,7 +529,6 @@ public object EjmlLinearSpaceFDRM : EjmlLinearSpace<Float, Float32Field, FMatrix
} }
/** /**
* [EjmlLinearSpace] implementation based on [CommonOps_DSCC], [DecompositionFactory_DSCC] operations and * [EjmlLinearSpace] implementation based on [CommonOps_DSCC], [DecompositionFactory_DSCC] operations and
* [DMatrixSparseCSC] matrices. * [DMatrixSparseCSC] matrices.
@ -705,64 +675,52 @@ public object EjmlLinearSpaceDSCC : EjmlLinearSpace<Double, Float64Field, DMatri
override fun Double.times(v: Point<Double>): EjmlDoubleVector<DMatrixSparseCSC> = v * this override fun Double.times(v: Point<Double>): EjmlDoubleVector<DMatrixSparseCSC> = v * this
@UnstableKMathAPI override fun <V, A : StructureAttribute<V>> computeAttribute(structure: Structure2D<Double>, attribute: A): V? {
override fun <F : StructureFeature> computeFeature(structure: Matrix<Double>, type: KClass<out F>): F? {
structure.getFeature(type)?.let { return it }
val origin = structure.toEjml().origin val origin = structure.toEjml().origin
return when (type) { val raw: Any? = when (attribute) {
QRDecompositionFeature::class -> object : QRDecompositionFeature<Double> { Inverted -> {
private val qr by lazy { val res = DMatrixRMaj(origin.numRows,origin.numCols)
DecompositionFactory_DSCC.qr(FillReducing.NONE).apply { decompose(origin.copy()) } CommonOps_DSCC.invert(origin,res)
res.wrapMatrix()
} }
override val q: Matrix<Double> by lazy { Determinant -> CommonOps_DSCC.det(origin)
qr.getQ(null, false).wrapMatrix().withFeature(OrthogonalFeature)
QR -> object : QRDecomposition<Double> {
val ejmlQr by lazy { DecompositionFactory_DSCC.qr(FillReducing.NONE).apply { decompose(origin.copy()) } }
override val q: Matrix<Double> get() = ejmlQr.getQ(null, false).wrapMatrix()
override val r: Matrix<Double> get() = ejmlQr.getR(null, false).wrapMatrix()
} }
override val r: Matrix<Double> by lazy { qr.getR(null, false).wrapMatrix().withFeature(UFeature) } Cholesky -> object : CholeskyDecomposition<Double> {
}
CholeskyDecompositionFeature::class -> object : CholeskyDecompositionFeature<Double> {
override val l: Matrix<Double> by lazy { override val l: Matrix<Double> by lazy {
val cholesky = val cholesky =
DecompositionFactory_DSCC.cholesky().apply { decompose(origin.copy()) } DecompositionFactory_DSCC.cholesky().apply { decompose(origin.copy()) }
(cholesky.getT(null) as DMatrix).wrapMatrix().withFeature(LFeature) (cholesky.getT(null) as DMatrix).wrapMatrix().withAttribute(LowerTriangular)
} }
} }
LUDecompositionFeature::class, DeterminantFeature::class, InverseMatrixFeature::class -> object : LUP -> object : LupDecomposition<Double> {
LUDecompositionFeature<Double>, DeterminantFeature<Double>, InverseMatrixFeature<Double> { private val lup by lazy {
private val lu by lazy {
DecompositionFactory_DSCC.lu(FillReducing.NONE).apply { decompose(origin.copy()) } DecompositionFactory_DSCC.lu(FillReducing.NONE).apply { decompose(origin.copy()) }
} }
override val l: Matrix<Double> by lazy { override val l: Matrix<Double>
lu.getLower(null).wrapMatrix().withFeature(LFeature) get() = lup.getLower(null).wrapMatrix().withAttribute(LowerTriangular)
}
override val u: Matrix<Double> by lazy {
lu.getUpper(null).wrapMatrix().withFeature(UFeature)
}
override val inverse: Matrix<Double> by lazy { override val u: Matrix<Double>
var a = origin get() = lup.getUpper(null).wrapMatrix().withAttribute(UpperTriangular)
val inverse = DMatrixRMaj(1, 1) override val pivot: IntBuffer get() = lup.getRowPivotV(null).asBuffer()
val solver = LinearSolverFactory_DSCC.lu(FillReducing.NONE)
if (solver.modifiesA()) a = a.copy()
val i = CommonOps_DDRM.identity(a.numRows)
solver.solve(i, inverse)
inverse.wrapMatrix()
}
override val determinant: Double by lazy { elementAlgebra.number(lu.computeDeterminant().real) }
} }
else -> null else -> null
}?.let{
type.cast(it)
} }
@Suppress("UNCHECKED_CAST")
return raw as V?
} }
/** /**
@ -793,7 +751,6 @@ public object EjmlLinearSpaceDSCC : EjmlLinearSpace<Double, Float64Field, DMatri
} }
/** /**
* [EjmlLinearSpace] implementation based on [CommonOps_FSCC], [DecompositionFactory_FSCC] operations and * [EjmlLinearSpace] implementation based on [CommonOps_FSCC], [DecompositionFactory_FSCC] operations and
* [FMatrixSparseCSC] matrices. * [FMatrixSparseCSC] matrices.
@ -939,65 +896,52 @@ public object EjmlLinearSpaceFSCC : EjmlLinearSpace<Float, Float32Field, FMatrix
} }
override fun Float.times(v: Point<Float>): EjmlFloatVector<FMatrixSparseCSC> = v * this override fun Float.times(v: Point<Float>): EjmlFloatVector<FMatrixSparseCSC> = v * this
override fun <V, A : StructureAttribute<V>> computeAttribute(structure: Structure2D<Float32>, attribute: A): V? {
@UnstableKMathAPI
override fun <F : StructureFeature> computeFeature(structure: Matrix<Float>, type: KClass<out F>): F? {
structure.getFeature(type)?.let { return it }
val origin = structure.toEjml().origin val origin = structure.toEjml().origin
return when (type) { val raw: Any? = when (attribute) {
QRDecompositionFeature::class -> object : QRDecompositionFeature<Float> { Inverted -> {
private val qr by lazy { val res = FMatrixRMaj(origin.numRows,origin.numCols)
DecompositionFactory_FSCC.qr(FillReducing.NONE).apply { decompose(origin.copy()) } CommonOps_FSCC.invert(origin,res)
res.wrapMatrix()
} }
override val q: Matrix<Float> by lazy { Determinant -> CommonOps_FSCC.det(origin)
qr.getQ(null, false).wrapMatrix().withFeature(OrthogonalFeature)
QR -> object : QRDecomposition<Float32> {
val ejmlQr by lazy { DecompositionFactory_FSCC.qr(FillReducing.NONE).apply { decompose(origin.copy()) } }
override val q: Matrix<Float32> get() = ejmlQr.getQ(null, false).wrapMatrix()
override val r: Matrix<Float32> get() = ejmlQr.getR(null, false).wrapMatrix()
} }
override val r: Matrix<Float> by lazy { qr.getR(null, false).wrapMatrix().withFeature(UFeature) } Cholesky -> object : CholeskyDecomposition<Float32> {
} override val l: Matrix<Float32> by lazy {
CholeskyDecompositionFeature::class -> object : CholeskyDecompositionFeature<Float> {
override val l: Matrix<Float> by lazy {
val cholesky = val cholesky =
DecompositionFactory_FSCC.cholesky().apply { decompose(origin.copy()) } DecompositionFactory_FSCC.cholesky().apply { decompose(origin.copy()) }
(cholesky.getT(null) as FMatrix).wrapMatrix().withFeature(LFeature) (cholesky.getT(null) as FMatrix).wrapMatrix().withAttribute(LowerTriangular)
} }
} }
LUDecompositionFeature::class, DeterminantFeature::class, InverseMatrixFeature::class -> object : LUP -> object : LupDecomposition<Float32> {
LUDecompositionFeature<Float>, DeterminantFeature<Float>, InverseMatrixFeature<Float> { private val lup by lazy {
private val lu by lazy {
DecompositionFactory_FSCC.lu(FillReducing.NONE).apply { decompose(origin.copy()) } DecompositionFactory_FSCC.lu(FillReducing.NONE).apply { decompose(origin.copy()) }
} }
override val l: Matrix<Float> by lazy { override val l: Matrix<Float32>
lu.getLower(null).wrapMatrix().withFeature(LFeature) get() = lup.getLower(null).wrapMatrix().withAttribute(LowerTriangular)
}
override val u: Matrix<Float> by lazy {
lu.getUpper(null).wrapMatrix().withFeature(UFeature)
}
override val inverse: Matrix<Float> by lazy { override val u: Matrix<Float32>
var a = origin get() = lup.getUpper(null).wrapMatrix().withAttribute(UpperTriangular)
val inverse = FMatrixRMaj(1, 1) override val pivot: IntBuffer get() = lup.getRowPivotV(null).asBuffer()
val solver = LinearSolverFactory_FSCC.lu(FillReducing.NONE)
if (solver.modifiesA()) a = a.copy()
val i = CommonOps_FDRM.identity(a.numRows)
solver.solve(i, inverse)
inverse.wrapMatrix()
}
override val determinant: Float by lazy { elementAlgebra.number(lu.computeDeterminant().real) }
} }
else -> null else -> null
}?.let{
type.cast(it)
} }
@Suppress("UNCHECKED_CAST")
return raw as V?
} }
/** /**

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@ -58,19 +58,19 @@ internal class EjmlMatrixTest {
@OptIn(UnstableKMathAPI::class) @OptIn(UnstableKMathAPI::class)
@Test @Test
fun features() { fun features() = EjmlLinearSpaceDDRM {
val m = randomMatrix val m = randomMatrix
val w = EjmlDoubleMatrix(m) val w = EjmlDoubleMatrix(m)
val det: Determinant<Double> = EjmlLinearSpaceDDRM.attributeForOrNull(w) ?: fail() val det: Double = w.getOrComputeAttribute(Determinant) ?: fail()
assertEquals(CommonOps_DDRM.det(m), det.determinant) assertEquals(CommonOps_DDRM.det(m), det)
val lup: LupDecompositionAttribute<Double> = EjmlLinearSpaceDDRM.attributeForOrNull(w) ?: fail() val lup: LupDecomposition<Double> = w.getOrComputeAttribute(LUP) ?: fail()
val ludecompositionF64 = DecompositionFactory_DDRM.lu(m.numRows, m.numCols) val ludecompositionF64 = DecompositionFactory_DDRM.lu(m.numRows, m.numCols)
.also { it.decompose(m.copy()) } .also { it.decompose(m.copy()) }
assertMatrixEquals(EjmlDoubleMatrix(ludecompositionF64.getLower(null)), lup.l) assertMatrixEquals(EjmlDoubleMatrix(ludecompositionF64.getLower(null)), lup.l)
assertMatrixEquals(EjmlDoubleMatrix(ludecompositionF64.getUpper(null)), lup.u) assertMatrixEquals(EjmlDoubleMatrix(ludecompositionF64.getUpper(null)), lup.u)
assertMatrixEquals(EjmlDoubleMatrix(ludecompositionF64.getRowPivot(null)), lup.p) assertMatrixEquals(EjmlDoubleMatrix(ludecompositionF64.getRowPivot(null)), lup.pivotMatrix(this))
} }
@Test @Test

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@ -6,6 +6,7 @@ kscience {
jvm() jvm()
js() js()
native() native()
wasm()
dependencies { dependencies {
api(projects.kmathCore) api(projects.kmathCore)

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@ -7,7 +7,7 @@ package space.kscience.kmath.real
import space.kscience.kmath.linear.asMatrix import space.kscience.kmath.linear.asMatrix
import space.kscience.kmath.linear.linearSpace import space.kscience.kmath.linear.linearSpace
import space.kscience.kmath.linear.transpose import space.kscience.kmath.linear.transposed
import space.kscience.kmath.operations.algebra import space.kscience.kmath.operations.algebra
import space.kscience.kmath.structures.Float64Buffer import space.kscience.kmath.structures.Float64Buffer
import kotlin.test.Test import kotlin.test.Test
@ -34,7 +34,7 @@ internal class DoubleVectorTest {
val vector1 = Float64Buffer(5) { it.toDouble() } val vector1 = Float64Buffer(5) { it.toDouble() }
val vector2 = Float64Buffer(5) { 5 - it.toDouble() } val vector2 = Float64Buffer(5) { 5 - it.toDouble() }
val matrix1 = vector1.asMatrix() val matrix1 = vector1.asMatrix()
val matrix2 = vector2.asMatrix().transpose() val matrix2 = vector2.asMatrix().transposed()
val product = matrix1 dot matrix2 val product = matrix1 dot matrix2
assertEquals(5.0, product[1, 0]) assertEquals(5.0, product[1, 0])
assertEquals(6.0, product[2, 2]) assertEquals(6.0, product[2, 2])

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@ -6,7 +6,6 @@ kscience{
jvm() jvm()
js() js()
native() native()
wasm() wasm()
dependencies { dependencies {

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@ -92,7 +92,7 @@ public inline fun <reified T : Any> GaussIntegrator<T>.integrate(
range: ClosedRange<Double>, range: ClosedRange<Double>,
order: Int = 10, order: Int = 10,
intervals: Int = 10, intervals: Int = 10,
attributesBuilder: AttributesBuilder<UnivariateIntegrand<T>>.() -> Unit, attributesBuilder: AttributesBuilder<UnivariateIntegrand<T>>.() -> Unit = {},
noinline function: (Double) -> T, noinline function: (Double) -> T,
): UnivariateIntegrand<T> { ): UnivariateIntegrand<T> {
require(range.endInclusive > range.start) { "The range upper bound should be higher than lower bound" } require(range.endInclusive > range.start) { "The range upper bound should be higher than lower bound" }

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@ -23,7 +23,7 @@ import space.kscience.kmath.structures.MutableBufferFactory
*/ */
public class SplineInterpolator<T : Comparable<T>>( public class SplineInterpolator<T : Comparable<T>>(
override val algebra: Field<T>, override val algebra: Field<T>,
public val bufferFactory: MutableBufferFactory<T>, public val bufferFactory: MutableBufferFactory<T> = algebra.bufferFactory,
) : PolynomialInterpolator<T> { ) : PolynomialInterpolator<T> {
//TODO possibly optimize zeroed buffers //TODO possibly optimize zeroed buffers

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@ -9,6 +9,7 @@ package space.kscience.kmath.functions.testUtils
import space.kscience.kmath.operations.Ring import space.kscience.kmath.operations.Ring
import space.kscience.kmath.operations.ScaleOperations import space.kscience.kmath.operations.ScaleOperations
import space.kscience.kmath.structures.MutableBufferFactory
class IntModulo { class IntModulo {
@ -109,15 +110,17 @@ class IntModulo {
} }
@Suppress("EXTENSION_SHADOWED_BY_MEMBER", "OVERRIDE_BY_INLINE") @Suppress("EXTENSION_SHADOWED_BY_MEMBER", "OVERRIDE_BY_INLINE")
class IntModuloRing : Ring<IntModulo>, ScaleOperations<IntModulo> { class IntModuloRing(modulus: Int) : Ring<IntModulo>, ScaleOperations<IntModulo> {
val modulus: Int val modulus: Int
constructor(modulus: Int) { init {
require(modulus != 0) { "modulus can not be zero" } require(modulus != 0) { "modulus can not be zero" }
this.modulus = if (modulus < 0) -modulus else modulus this.modulus = if (modulus < 0) -modulus else modulus
} }
override val bufferFactory: MutableBufferFactory<IntModulo> = MutableBufferFactory()
override inline val zero: IntModulo get() = IntModulo(0, modulus, toCheckInput = false) override inline val zero: IntModulo get() = IntModulo(0, modulus, toCheckInput = false)
override inline val one: IntModulo get() = IntModulo(1, modulus, toCheckInput = false) override inline val one: IntModulo get() = IntModulo(1, modulus, toCheckInput = false)

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@ -10,6 +10,7 @@ package space.kscience.kmath.functions.testUtils
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.operations.Field import space.kscience.kmath.operations.Field
import space.kscience.kmath.operations.NumbersAddOps import space.kscience.kmath.operations.NumbersAddOps
import space.kscience.kmath.structures.MutableBufferFactory
@Suppress("NAME_SHADOWING") @Suppress("NAME_SHADOWING")
class Rational { class Rational {
@ -159,6 +160,7 @@ class Rational {
@Suppress("EXTENSION_SHADOWED_BY_MEMBER", "OVERRIDE_BY_INLINE") @Suppress("EXTENSION_SHADOWED_BY_MEMBER", "OVERRIDE_BY_INLINE")
@OptIn(UnstableKMathAPI::class) @OptIn(UnstableKMathAPI::class)
object RationalField : Field<Rational>, NumbersAddOps<Rational> { object RationalField : Field<Rational>, NumbersAddOps<Rational> {
override val bufferFactory: MutableBufferFactory<Rational> = MutableBufferFactory()
override inline val zero: Rational get() = Rational.ZERO override inline val zero: Rational get() = Rational.ZERO
override inline val one: Rational get() = Rational.ONE override inline val one: Rational get() = Rational.ONE

View File

@ -26,7 +26,7 @@ class SplineIntegralTest {
@Test @Test
fun gaussSin() { fun gaussSin() {
val res = Float64Field.splineIntegrator.integrate(0.0..2 * PI, IntegrandMaxCalls(5)) { x -> val res = Float64Field.splineIntegrator.integrate(0.0..2 * PI, { IntegrandMaxCalls(5) }) { x ->
sin(x) sin(x)
} }
assertEquals(0.0, res.value, 1e-2) assertEquals(0.0, res.value, 1e-2)
@ -34,7 +34,7 @@ class SplineIntegralTest {
@Test @Test
fun gaussUniform() { fun gaussUniform() {
val res = Float64Field.splineIntegrator.integrate(35.0..100.0, IntegrandMaxCalls(20)) { x -> val res = Float64Field.splineIntegrator.integrate(35.0..100.0, { IntegrandMaxCalls(20) }) { x ->
if (x in 30.0..50.0) { if (x in 30.0..50.0) {
1.0 1.0
} else { } else {

View File

@ -7,8 +7,8 @@ package space.kscience.kmath.geometry
import kotlinx.serialization.SerialName import kotlinx.serialization.SerialName
import kotlinx.serialization.Serializable import kotlinx.serialization.Serializable
import space.kscience.kmath.geometry.euclidean2d.DoubleVector2D import space.kscience.kmath.geometry.euclidean2d.Float64Vector2D
import space.kscience.kmath.geometry.euclidean3d.DoubleVector3D import space.kscience.kmath.geometry.euclidean3d.Float64Vector3D
/** /**
* A line formed by [start] vector of start and a [direction] vector. Direction vector is not necessarily normalized, * A line formed by [start] vector of start and a [direction] vector. Direction vector is not necessarily normalized,
@ -25,8 +25,8 @@ private data class LineImpl<out V : Any>(override val start: V, override val dir
public fun <V : Any> Line(base: V, direction: V): Line<V> = LineImpl(base, direction) public fun <V : Any> Line(base: V, direction: V): Line<V> = LineImpl(base, direction)
public typealias Line2D = Line<DoubleVector2D> public typealias Line2D = Line<Float64Vector2D>
public typealias Line3D = Line<DoubleVector3D> public typealias Line3D = Line<Float64Vector3D>
/** /**
* A directed line segment between [begin] and [end] * A directed line segment between [begin] and [end]
@ -49,5 +49,5 @@ public fun <V : Any> LineSegment<V>.line(algebra: GeometrySpace<V, *>): Line<V>
Line(begin, end - begin) Line(begin, end - begin)
} }
public typealias LineSegment2D = LineSegment<DoubleVector2D> public typealias LineSegment2D = LineSegment<Float64Vector2D>
public typealias LineSegment3D = LineSegment<DoubleVector3D> public typealias LineSegment3D = LineSegment<Float64Vector3D>

View File

@ -5,6 +5,7 @@
package space.kscience.kmath.geometry package space.kscience.kmath.geometry
import space.kscience.attributes.SafeType
import space.kscience.kmath.linear.Point import space.kscience.kmath.linear.Point
import space.kscience.kmath.structures.Buffer import space.kscience.kmath.structures.Buffer
@ -33,6 +34,9 @@ public fun <T> Buffer<T>.asVector3D(): Vector3D<T> = object : Vector3D<T> {
require(this@asVector3D.size == 3) { "Buffer of size 3 is required for Vector3D" } require(this@asVector3D.size == 3) { "Buffer of size 3 is required for Vector3D" }
} }
override val type: SafeType<T> = this@asVector3D.type
override val x: T get() = this@asVector3D[0] override val x: T get() = this@asVector3D[0]
override val y: T get() = this@asVector3D[1] override val y: T get() = this@asVector3D[1]
override val z: T get() = this@asVector3D[2] override val z: T get() = this@asVector3D[2]

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@ -11,6 +11,8 @@ import kotlinx.serialization.builtins.serializer
import kotlinx.serialization.descriptors.SerialDescriptor import kotlinx.serialization.descriptors.SerialDescriptor
import kotlinx.serialization.encoding.Decoder import kotlinx.serialization.encoding.Decoder
import kotlinx.serialization.encoding.Encoder import kotlinx.serialization.encoding.Encoder
import space.kscience.kmath.operations.Group
import space.kscience.kmath.structures.MutableBufferFactory
import kotlin.jvm.JvmInline import kotlin.jvm.JvmInline
import kotlin.math.PI import kotlin.math.PI
import kotlin.math.floor import kotlin.math.floor
@ -28,11 +30,19 @@ public sealed interface Angle : Comparable<Angle> {
public operator fun div(other: Angle): Double public operator fun div(other: Angle): Double
public operator fun unaryMinus(): Angle public operator fun unaryMinus(): Angle
public companion object { public companion object: Group<Angle> {
public val zero: Radians = Radians(0.0) override val zero: Radians = Radians(0.0)
public val pi: Radians = Radians(PI) public val pi: Radians = Radians(PI)
public val piTimes2: Radians = Radians(PI * 2) public val piTimes2: Radians = Radians(PI * 2)
public val piDiv2: Radians = Radians(PI / 2) public val piDiv2: Radians = Radians(PI / 2)
override fun add(left: Angle, right: Angle): Angle = left + right
@Suppress("EXTENSION_SHADOWED_BY_MEMBER")
override fun Angle.unaryMinus(): Angle = -this
override val bufferFactory: MutableBufferFactory<Angle> = MutableBufferFactory()
} }
} }
@ -43,7 +53,7 @@ public object AngleSerializer : KSerializer<Angle> {
override fun deserialize(decoder: Decoder): Angle = decoder.decodeDouble().degrees override fun deserialize(decoder: Decoder): Angle = decoder.decodeDouble().degrees
override fun serialize(encoder: Encoder, value: Angle) { override fun serialize(encoder: Encoder, value: Angle) {
encoder.encodeDouble(value.degrees) encoder.encodeDouble(value.toDegrees().value)
} }
} }
@ -56,16 +66,16 @@ public value class Radians(public val value: Double) : Angle {
override fun toRadians(): Radians = this override fun toRadians(): Radians = this
override fun toDegrees(): Degrees = Degrees(value * 180 / PI) override fun toDegrees(): Degrees = Degrees(value * 180 / PI)
public override fun plus(other: Angle): Radians = Radians(value + other.radians) public override fun plus(other: Angle): Radians = Radians(value + other.toRadians().value)
public override fun minus(other: Angle): Radians = Radians(value - other.radians) public override fun minus(other: Angle): Radians = Radians(value - other.toRadians().value)
public override fun times(other: Number): Radians = Radians(value * other.toDouble()) public override fun times(other: Number): Radians = Radians(value * other.toDouble())
public override fun div(other: Number): Radians = Radians(value / other.toDouble()) public override fun div(other: Number): Radians = Radians(value / other.toDouble())
override fun div(other: Angle): Double = value / other.radians override fun div(other: Angle): Double = value / other.toRadians().value
public override fun unaryMinus(): Radians = Radians(-value) public override fun unaryMinus(): Radians = Radians(-value)
override fun compareTo(other: Angle): Int = value.compareTo(other.radians) override fun compareTo(other: Angle): Int = value.compareTo(other.toRadians().value)
} }
public fun sin(angle: Angle): Double = kotlin.math.sin(angle.toRadians().value) public fun sin(angle: Angle): Double = kotlin.math.sin(angle.toRadians().value)
@ -85,16 +95,16 @@ public value class Degrees(public val value: Double) : Angle {
override fun toRadians(): Radians = Radians(value * PI / 180) override fun toRadians(): Radians = Radians(value * PI / 180)
override fun toDegrees(): Degrees = this override fun toDegrees(): Degrees = this
public override fun plus(other: Angle): Degrees = Degrees(value + other.degrees) public override fun plus(other: Angle): Degrees = Degrees(value + other.toDegrees().value)
public override fun minus(other: Angle): Degrees = Degrees(value - other.degrees) public override fun minus(other: Angle): Degrees = Degrees(value - other.toDegrees().value)
public override fun times(other: Number): Degrees = Degrees(value * other.toDouble()) public override fun times(other: Number): Degrees = Degrees(value * other.toDouble())
public override fun div(other: Number): Degrees = Degrees(value / other.toDouble()) public override fun div(other: Number): Degrees = Degrees(value / other.toDouble())
override fun div(other: Angle): Double = value / other.degrees override fun div(other: Angle): Double = value / other.toDegrees().value
public override fun unaryMinus(): Degrees = Degrees(-value) public override fun unaryMinus(): Degrees = Degrees(-value)
override fun compareTo(other: Angle): Int = value.compareTo(other.degrees) override fun compareTo(other: Angle): Int = value.compareTo(other.toDegrees().value)
} }
public val Number.degrees: Degrees get() = Degrees(toDouble()) public val Number.degrees: Degrees get() = Degrees(toDouble())
@ -106,6 +116,6 @@ public val Angle.degrees: Double get() = toDegrees().value
* Normalized angle 2 PI range symmetric around [center]. By default, uses (0, 2PI) range. * Normalized angle 2 PI range symmetric around [center]. By default, uses (0, 2PI) range.
*/ */
public fun Angle.normalized(center: Angle = Angle.pi): Angle = public fun Angle.normalized(center: Angle = Angle.pi): Angle =
this - Angle.piTimes2 * floor((radians + PI - center.radians) / PI / 2) this - Angle.piTimes2 * floor((toRadians().value + PI - center.toRadians().value) / PI / 2)
public fun abs(angle: Angle): Angle = if (angle < Angle.zero) -angle else angle public fun abs(angle: Angle): Angle = if (angle < Angle.zero) -angle else angle

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@ -11,19 +11,22 @@ import kotlinx.serialization.Serializable
import kotlinx.serialization.descriptors.SerialDescriptor import kotlinx.serialization.descriptors.SerialDescriptor
import kotlinx.serialization.encoding.Decoder import kotlinx.serialization.encoding.Decoder
import kotlinx.serialization.encoding.Encoder import kotlinx.serialization.encoding.Encoder
import space.kscience.attributes.SafeType
import space.kscience.kmath.geometry.GeometrySpace import space.kscience.kmath.geometry.GeometrySpace
import space.kscience.kmath.geometry.Vector2D import space.kscience.kmath.geometry.Vector2D
import space.kscience.kmath.operations.Float32Field import space.kscience.kmath.operations.Float32Field
import space.kscience.kmath.structures.Float32 import space.kscience.kmath.structures.Float32
import space.kscience.kmath.structures.MutableBufferFactory
import kotlin.math.pow import kotlin.math.pow
import kotlin.math.sqrt import kotlin.math.sqrt
@Serializable(Float32Space2D.VectorSerializer::class) @Serializable(Float32Space2D.VectorSerializer::class)
public interface Float32Vector2D : Vector2D<Float> public interface Float32Vector2D : Vector2D<Float32>{
override val type: SafeType<Float32> get() = Float32Field.type
}
public object Float32Space2D : GeometrySpace<Float32Vector2D, Float32> { public object Float32Space2D : GeometrySpace<Float32Vector2D, Float32> {
@Serializable @Serializable
@SerialName("Float32Vector2D") @SerialName("Float32Vector2D")
private data class Vector2DImpl( private data class Vector2DImpl(
@ -72,6 +75,8 @@ public object Float32Space2D : GeometrySpace<Float32Vector2D, Float32> {
public val yAxis: Float32Vector2D = vector(0.0, 1.0) public val yAxis: Float32Vector2D = vector(0.0, 1.0)
override val defaultPrecision: Float32 = 1e-3f override val defaultPrecision: Float32 = 1e-3f
override val bufferFactory: MutableBufferFactory<Float32Vector2D> = MutableBufferFactory()
} }
public fun Float32Vector2D(x: Number, y: Number): Float32Vector2D = Float32Space2D.vector(x, y) public fun Float32Vector2D(x: Number, y: Number): Float32Vector2D = Float32Space2D.vector(x, y)

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@ -11,66 +11,77 @@ import kotlinx.serialization.Serializable
import kotlinx.serialization.descriptors.SerialDescriptor import kotlinx.serialization.descriptors.SerialDescriptor
import kotlinx.serialization.encoding.Decoder import kotlinx.serialization.encoding.Decoder
import kotlinx.serialization.encoding.Encoder import kotlinx.serialization.encoding.Encoder
import space.kscience.attributes.SafeType
import space.kscience.kmath.geometry.GeometrySpace import space.kscience.kmath.geometry.GeometrySpace
import space.kscience.kmath.geometry.Vector2D import space.kscience.kmath.geometry.Vector2D
import space.kscience.kmath.linear.Float64LinearSpace
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.operations.ScaleOperations import space.kscience.kmath.operations.ScaleOperations
import space.kscience.kmath.structures.Float64
import space.kscience.kmath.structures.MutableBufferFactory
import kotlin.math.pow import kotlin.math.pow
import kotlin.math.sqrt import kotlin.math.sqrt
public typealias DoubleVector2D = Vector2D<Double> @Serializable(Float64Space2D.VectorSerializer::class)
public typealias Float64Vector2D = Vector2D<Double> public interface Float64Vector2D : Vector2D<Float64> {
override val type: SafeType<Float64> get() = Float64Field.type
}
@Deprecated("Use Float64Vector2D", ReplaceWith("Float64Vector2D"))
public typealias DoubleVector2D = Float64Vector2D
public val Vector2D<Double>.r: Double get() = Float64Space2D.norm(this)
/** /**
* 2D Euclidean space * 2D Euclidean space
*/ */
public object Float64Space2D : GeometrySpace<DoubleVector2D>, ScaleOperations<DoubleVector2D> { public object Float64Space2D : GeometrySpace<Float64Vector2D, Float64>, ScaleOperations<Float64Vector2D> {
@Serializable @Serializable
@SerialName("Float64Vector2D") @SerialName("Float64Vector2D")
private data class Vector2DImpl( private data class Vector2DImpl(
override val x: Double, override val x: Double,
override val y: Double, override val y: Double,
) : DoubleVector2D ) : Float64Vector2D
public object VectorSerializer : KSerializer<DoubleVector2D> { public object VectorSerializer : KSerializer<Float64Vector2D> {
private val proxySerializer = Vector2DImpl.serializer() private val proxySerializer = Vector2DImpl.serializer()
override val descriptor: SerialDescriptor get() = proxySerializer.descriptor override val descriptor: SerialDescriptor get() = proxySerializer.descriptor
override fun deserialize(decoder: Decoder): DoubleVector2D = decoder.decodeSerializableValue(proxySerializer) override fun deserialize(decoder: Decoder): Float64Vector2D = decoder.decodeSerializableValue(proxySerializer)
override fun serialize(encoder: Encoder, value: DoubleVector2D) { override fun serialize(encoder: Encoder, value: Float64Vector2D) {
val vector = value as? Vector2DImpl ?: Vector2DImpl(value.x, value.y) val vector = value as? Vector2DImpl ?: Vector2DImpl(value.x, value.y)
encoder.encodeSerializableValue(proxySerializer, vector) encoder.encodeSerializableValue(proxySerializer, vector)
} }
} }
public fun vector(x: Number, y: Number): DoubleVector2D = Vector2DImpl(x.toDouble(), y.toDouble()) public fun vector(x: Number, y: Number): Float64Vector2D = Vector2DImpl(x.toDouble(), y.toDouble())
override val zero: DoubleVector2D by lazy { vector(0.0, 0.0) } override val zero: Float64Vector2D by lazy { vector(0.0, 0.0) }
override fun norm(arg: DoubleVector2D): Double = sqrt(arg.x.pow(2) + arg.y.pow(2)) override fun norm(arg: Float64Vector2D): Double = sqrt(arg.x.pow(2) + arg.y.pow(2))
override fun DoubleVector2D.unaryMinus(): DoubleVector2D = vector(-x, -y) override fun Float64Vector2D.unaryMinus(): Float64Vector2D = vector(-x, -y)
override fun DoubleVector2D.distanceTo(other: DoubleVector2D): Double = norm(this - other) override fun Float64Vector2D.distanceTo(other: Float64Vector2D): Double = norm(this - other)
override fun add(left: DoubleVector2D, right: DoubleVector2D): DoubleVector2D = override fun add(left: Float64Vector2D, right: Float64Vector2D): Float64Vector2D =
vector(left.x + right.x, left.y + right.y) vector(left.x + right.x, left.y + right.y)
override fun scale(a: DoubleVector2D, value: Double): DoubleVector2D = vector(a.x * value, a.y * value) override fun scale(a: Float64Vector2D, value: Double): Float64Vector2D = vector(a.x * value, a.y * value)
override fun DoubleVector2D.dot(other: DoubleVector2D): Double = x * other.x + y * other.y override fun Float64Vector2D.dot(other: Float64Vector2D): Double = x * other.x + y * other.y
public val xAxis: DoubleVector2D = vector(1.0, 0.0) public val xAxis: Float64Vector2D = vector(1.0, 0.0)
public val yAxis: DoubleVector2D = vector(0.0, 1.0) public val yAxis: Float64Vector2D = vector(0.0, 1.0)
override val defaultPrecision: Double = 1e-6 override val defaultPrecision: Double = 1e-6
override val bufferFactory: MutableBufferFactory<Float64Vector2D> = MutableBufferFactory()
} }
public fun Float64Vector2D(x: Number, y: Number): Float64Vector2D = Float64Space2D.vector(x, y) public fun Float64Vector2D(x: Number, y: Number): Float64Vector2D = Float64Space2D.vector(x, y)
public val Float64Vector2D.r: Float64 get() = Float64Space2D.norm(this)
public val Float64Field.euclidean2D: Float64Space2D get() = Float64Space2D public val Float64Field.euclidean2D: Float64Space2D get() = Float64Space2D

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@ -11,15 +11,19 @@ import kotlinx.serialization.Serializable
import kotlinx.serialization.descriptors.SerialDescriptor import kotlinx.serialization.descriptors.SerialDescriptor
import kotlinx.serialization.encoding.Decoder import kotlinx.serialization.encoding.Decoder
import kotlinx.serialization.encoding.Encoder import kotlinx.serialization.encoding.Encoder
import space.kscience.attributes.SafeType
import space.kscience.kmath.geometry.GeometrySpace import space.kscience.kmath.geometry.GeometrySpace
import space.kscience.kmath.geometry.Vector3D import space.kscience.kmath.geometry.Vector3D
import space.kscience.kmath.operations.Float32Field import space.kscience.kmath.operations.Float32Field
import space.kscience.kmath.structures.Float32 import space.kscience.kmath.structures.Float32
import space.kscience.kmath.structures.MutableBufferFactory
import kotlin.math.pow import kotlin.math.pow
import kotlin.math.sqrt import kotlin.math.sqrt
@Serializable(Float32Space3D.VectorSerializer::class) @Serializable(Float32Space3D.VectorSerializer::class)
public interface Float32Vector3D : Vector3D<Float> public interface Float32Vector3D : Vector3D<Float>{
override val type: SafeType<Float32> get() = Float32Field.type
}
public object Float32Space3D : GeometrySpace<Float32Vector3D, Float32> { public object Float32Space3D : GeometrySpace<Float32Vector3D, Float32> {
@ -101,6 +105,8 @@ public object Float32Space3D : GeometrySpace<Float32Vector3D, Float32> {
public val zAxis: Float32Vector3D = vector(0.0, 0.0, 1.0) public val zAxis: Float32Vector3D = vector(0.0, 0.0, 1.0)
override val defaultPrecision: Float32 = 1e-3f override val defaultPrecision: Float32 = 1e-3f
override val bufferFactory: MutableBufferFactory<Float32Vector3D> = MutableBufferFactory()
} }
public fun Float32Vector3D(x: Number, y: Number, z: Number): Float32Vector3D = Float32Space3D.vector(x, y, z) public fun Float32Vector3D(x: Number, y: Number, z: Number): Float32Vector3D = Float32Space3D.vector(x, y, z)

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@ -11,10 +11,13 @@ import kotlinx.serialization.Serializable
import kotlinx.serialization.descriptors.SerialDescriptor import kotlinx.serialization.descriptors.SerialDescriptor
import kotlinx.serialization.encoding.Decoder import kotlinx.serialization.encoding.Decoder
import kotlinx.serialization.encoding.Encoder import kotlinx.serialization.encoding.Encoder
import space.kscience.attributes.SafeType
import space.kscience.kmath.geometry.GeometrySpace import space.kscience.kmath.geometry.GeometrySpace
import space.kscience.kmath.geometry.Vector3D import space.kscience.kmath.geometry.Vector3D
import space.kscience.kmath.linear.Float64LinearSpace import space.kscience.kmath.linear.Float64LinearSpace
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.structures.Float64
import space.kscience.kmath.structures.MutableBufferFactory
import kotlin.math.pow import kotlin.math.pow
import kotlin.math.sqrt import kotlin.math.sqrt
@ -31,12 +34,16 @@ internal fun leviCivita(i: Int, j: Int, k: Int): Int = when {
else -> 0 else -> 0
} }
public typealias DoubleVector3D = Vector3D<Double> @Serializable(Float64Space3D.VectorSerializer::class)
public typealias Float64Vector3D = Vector3D<Double> public interface Float64Vector3D : Vector3D<Float64> {
override val type: SafeType<Float64> get() = Float64Field.type
}
public val DoubleVector3D.r: Double get() = Float64Space3D.norm(this) @Deprecated("Use Float64Vector3D", ReplaceWith("Float64Vector3D"))
public typealias DoubleVector3D = Float64Vector3D
public object Float64Space3D : GeometrySpace<DoubleVector3D, Double>{
public object Float64Space3D : GeometrySpace<Vector3D<Float64>, Double> {
public val linearSpace: Float64LinearSpace = Float64LinearSpace public val linearSpace: Float64LinearSpace = Float64LinearSpace
@ -46,52 +53,52 @@ public object Float64Space3D : GeometrySpace<DoubleVector3D, Double>{
override val x: Double, override val x: Double,
override val y: Double, override val y: Double,
override val z: Double, override val z: Double,
) : DoubleVector3D ) : Float64Vector3D
public object VectorSerializer : KSerializer<DoubleVector3D> { public object VectorSerializer : KSerializer<Float64Vector3D> {
private val proxySerializer = Vector3DImpl.serializer() private val proxySerializer = Vector3DImpl.serializer()
override val descriptor: SerialDescriptor get() = proxySerializer.descriptor override val descriptor: SerialDescriptor get() = proxySerializer.descriptor
override fun deserialize(decoder: Decoder): DoubleVector3D = decoder.decodeSerializableValue(proxySerializer) override fun deserialize(decoder: Decoder): Float64Vector3D = decoder.decodeSerializableValue(proxySerializer)
override fun serialize(encoder: Encoder, value: DoubleVector3D) { override fun serialize(encoder: Encoder, value: Float64Vector3D) {
val vector = value as? Vector3DImpl ?: Vector3DImpl(value.x, value.y, value.z) val vector = value as? Vector3DImpl ?: Vector3DImpl(value.x, value.y, value.z)
encoder.encodeSerializableValue(proxySerializer, vector) encoder.encodeSerializableValue(proxySerializer, vector)
} }
} }
public fun vector(x: Double, y: Double, z: Double): DoubleVector3D = public fun vector(x: Double, y: Double, z: Double): Float64Vector3D =
Vector3DImpl(x, y, z) Vector3DImpl(x, y, z)
public fun vector(x: Number, y: Number, z: Number): DoubleVector3D = public fun vector(x: Number, y: Number, z: Number): Float64Vector3D =
vector(x.toDouble(), y.toDouble(), z.toDouble()) vector(x.toDouble(), y.toDouble(), z.toDouble())
override val zero: DoubleVector3D by lazy { vector(0.0, 0.0, 0.0) } override val zero: Float64Vector3D by lazy { vector(0.0, 0.0, 0.0) }
override fun norm(arg: DoubleVector3D): Double = sqrt(arg.x.pow(2) + arg.y.pow(2) + arg.z.pow(2)) override fun norm(arg: Vector3D<Float64>): Double = sqrt(arg.x.pow(2) + arg.y.pow(2) + arg.z.pow(2))
public fun DoubleVector3D.norm(): Double = norm(this) public fun Vector3D<Float64>.norm(): Double = norm(this)
override fun DoubleVector3D.unaryMinus(): DoubleVector3D = vector(-x, -y, -z) override fun Vector3D<Float64>.unaryMinus(): Float64Vector3D = vector(-x, -y, -z)
override fun DoubleVector3D.distanceTo(other: DoubleVector3D): Double = (this - other).norm() override fun Vector3D<Float64>.distanceTo(other: Vector3D<Float64>): Double = (this - other).norm()
override fun add(left: DoubleVector3D, right: DoubleVector3D): DoubleVector3D = override fun add(left: Vector3D<Float64>, right: Vector3D<Float64>): Float64Vector3D =
vector(left.x + right.x, left.y + right.y, left.z + right.z) vector(left.x + right.x, left.y + right.y, left.z + right.z)
override fun scale(a: DoubleVector3D, value: Double): DoubleVector3D = override fun scale(a: Vector3D<Float64>, value: Double): Float64Vector3D =
vector(a.x * value, a.y * value, a.z * value) vector(a.x * value, a.y * value, a.z * value)
override fun DoubleVector3D.dot(other: DoubleVector3D): Double = override fun Vector3D<Float64>.dot(other: Vector3D<Float64>): Double =
x * other.x + y * other.y + z * other.z x * other.x + y * other.y + z * other.z
/** /**
* Compute vector product of [first] and [second]. The basis is assumed to be right-handed. * Compute vector product of [first] and [second]. The basis is assumed to be right-handed.
*/ */
public fun vectorProduct( public fun vectorProduct(
first: DoubleVector3D, first: Vector3D<Float64>,
second: DoubleVector3D, second: Vector3D<Float64>,
): DoubleVector3D { ): Float64Vector3D {
var x = 0.0 var x = 0.0
var y = 0.0 var y = 0.0
var z = 0.0 var z = 0.0
@ -110,13 +117,18 @@ public object Float64Space3D : GeometrySpace<DoubleVector3D, Double>{
/** /**
* Vector product with the right basis * Vector product with the right basis
*/ */
public infix fun DoubleVector3D.cross(other: DoubleVector3D): Vector3D<Double> = vectorProduct(this, other) public infix fun Vector3D<Float64>.cross(other: Vector3D<Float64>): Vector3D<Double> = vectorProduct(this, other)
public val xAxis: DoubleVector3D = vector(1.0, 0.0, 0.0) public val xAxis: Float64Vector3D = vector(1.0, 0.0, 0.0)
public val yAxis: DoubleVector3D = vector(0.0, 1.0, 0.0) public val yAxis: Float64Vector3D = vector(0.0, 1.0, 0.0)
public val zAxis: DoubleVector3D = vector(0.0, 0.0, 1.0) public val zAxis: Float64Vector3D = vector(0.0, 0.0, 1.0)
override val defaultPrecision: Double = 1e-6 override val defaultPrecision: Double = 1e-6
override val bufferFactory: MutableBufferFactory<Vector3D<Float64>> = MutableBufferFactory()
} }
public val Float64Field.euclidean3D: Float64Space3D get() = Float64Space3D public val Float64Field.euclidean3D: Float64Space3D get() = Float64Space3D
public val Float64Vector3D.r: Double get() = Float64Space3D.norm(this)

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@ -5,6 +5,7 @@
package space.kscience.kmath.geometry.euclidean3d package space.kscience.kmath.geometry.euclidean3d
import space.kscience.attributes.SafeType
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.complex.* import space.kscience.kmath.complex.*
import space.kscience.kmath.geometry.* import space.kscience.kmath.geometry.*
@ -13,6 +14,7 @@ import space.kscience.kmath.linear.Matrix
import space.kscience.kmath.linear.linearSpace import space.kscience.kmath.linear.linearSpace
import space.kscience.kmath.linear.matrix import space.kscience.kmath.linear.matrix
import space.kscience.kmath.operations.Float64Field import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.structures.Float64
import kotlin.math.* import kotlin.math.*
public operator fun Quaternion.times(other: Quaternion): Quaternion = QuaternionAlgebra.multiply(this, other) public operator fun Quaternion.times(other: Quaternion): Quaternion = QuaternionAlgebra.multiply(this, other)
@ -35,7 +37,7 @@ public infix fun Quaternion.dot(other: Quaternion): Double = w * other.w + x * o
/** /**
* Represent a vector as quaternion with zero a rotation angle. * Represent a vector as quaternion with zero a rotation angle.
*/ */
internal fun DoubleVector3D.asQuaternion(): Quaternion = Quaternion(0.0, x, y, z) internal fun Float64Vector3D.asQuaternion(): Quaternion = Quaternion(0.0, x, y, z)
/** /**
* Angle in radians denoted by this quaternion rotation * Angle in radians denoted by this quaternion rotation
@ -45,7 +47,7 @@ public val Quaternion.theta: Radians get() = (kotlin.math.acos(normalized().w) *
/** /**
* Create a normalized Quaternion from rotation angle and rotation vector * Create a normalized Quaternion from rotation angle and rotation vector
*/ */
public fun Quaternion.Companion.fromRotation(theta: Angle, vector: DoubleVector3D): Quaternion { public fun Quaternion.Companion.fromRotation(theta: Angle, vector: Float64Vector3D): Quaternion {
val s = sin(theta / 2) val s = sin(theta / 2)
val c = cos(theta / 2) val c = cos(theta / 2)
val norm = with(Float64Space3D) { vector.norm() } val norm = with(Float64Space3D) { vector.norm() }
@ -55,9 +57,9 @@ public fun Quaternion.Companion.fromRotation(theta: Angle, vector: DoubleVector3
/** /**
* An axis of quaternion rotation * An axis of quaternion rotation
*/ */
public val Quaternion.vector: DoubleVector3D public val Quaternion.vector: Float64Vector3D
get() { get() {
return object : DoubleVector3D { return object : Float64Vector3D {
private val sint2 = sqrt(1 - w * w) private val sint2 = sqrt(1 - w * w)
override val x: Double get() = this@vector.x / sint2 override val x: Double get() = this@vector.x / sint2
override val y: Double get() = this@vector.y / sint2 override val y: Double get() = this@vector.y / sint2
@ -69,7 +71,7 @@ public val Quaternion.vector: DoubleVector3D
/** /**
* Rotate a vector in a [Float64Space3D] with [quaternion] * Rotate a vector in a [Float64Space3D] with [quaternion]
*/ */
public fun Float64Space3D.rotate(vector: DoubleVector3D, quaternion: Quaternion): DoubleVector3D = public fun Float64Space3D.rotate(vector: Float64Vector3D, quaternion: Quaternion): Float64Vector3D =
with(QuaternionAlgebra) { with(QuaternionAlgebra) {
val p = vector.asQuaternion() val p = vector.asQuaternion()
(quaternion * p * quaternion.reciprocal).vector (quaternion * p * quaternion.reciprocal).vector
@ -80,15 +82,15 @@ public fun Float64Space3D.rotate(vector: DoubleVector3D, quaternion: Quaternion)
*/ */
@UnstableKMathAPI @UnstableKMathAPI
public fun Float64Space3D.rotate( public fun Float64Space3D.rotate(
vector: DoubleVector3D, vector: Float64Vector3D,
composition: QuaternionAlgebra.() -> Quaternion, composition: QuaternionAlgebra.() -> Quaternion,
): DoubleVector3D = ): Float64Vector3D =
rotate(vector, QuaternionAlgebra.composition()) rotate(vector, QuaternionAlgebra.composition())
/** /**
* Rotate a [Float64] vector in 3D space with a rotation matrix * Rotate a [Float64] vector in 3D space with a rotation matrix
*/ */
public fun Float64Space3D.rotate(vector: DoubleVector3D, matrix: Matrix<Double>): DoubleVector3D { public fun Float64Space3D.rotate(vector: Float64Vector3D, matrix: Matrix<Double>): Vector3D<Float64> {
require(matrix.colNum == 3 && matrix.rowNum == 3) { "Square 3x3 rotation matrix is required" } require(matrix.colNum == 3 && matrix.rowNum == 3) { "Square 3x3 rotation matrix is required" }
return with(linearSpace) { (matrix dot vector).asVector3D() } return with(linearSpace) { (matrix dot vector).asVector3D() }
} }
@ -242,6 +244,8 @@ public fun Quaternion.Companion.fromEuler(
* A vector consisting of angles * A vector consisting of angles
*/ */
public data class AngleVector(override val x: Angle, override val y: Angle, override val z: Angle) : Vector3D<Angle> { public data class AngleVector(override val x: Angle, override val y: Angle, override val z: Angle) : Vector3D<Angle> {
override val type: SafeType<Angle> get() = Angle.type
public companion object public companion object
} }

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@ -5,8 +5,7 @@
package space.kscience.kmath.geometry package space.kscience.kmath.geometry
import space.kscience.kmath.geometry.euclidean2d.DoubleVector2D import space.kscience.kmath.structures.Float64
import space.kscience.kmath.geometry.euclidean3d.DoubleVector3D
import kotlin.math.abs import kotlin.math.abs
import kotlin.test.assertEquals import kotlin.test.assertEquals
@ -27,12 +26,12 @@ fun grid(
return xs.flatMap { x -> ys.map { y -> x to y } } return xs.flatMap { x -> ys.map { y -> x to y } }
} }
fun assertVectorEquals(expected: DoubleVector2D, actual: DoubleVector2D, absoluteTolerance: Double = 1e-3) { fun assertVectorEquals(expected: Vector2D<Float64>, actual: Vector2D<Float64>, absoluteTolerance: Double = 1e-3) {
assertEquals(expected.x, actual.x, absoluteTolerance) assertEquals(expected.x, actual.x, absoluteTolerance)
assertEquals(expected.y, actual.y, absoluteTolerance) assertEquals(expected.y, actual.y, absoluteTolerance)
} }
fun assertVectorEquals(expected: DoubleVector3D, actual: DoubleVector3D, absoluteTolerance: Double = 1e-6) { fun assertVectorEquals(expected: Vector3D<Float64>, actual: Vector3D<Float64>, absoluteTolerance: Double = 1e-6) {
assertEquals(expected.x, actual.x, absoluteTolerance) assertEquals(expected.x, actual.x, absoluteTolerance)
assertEquals(expected.y, actual.y, absoluteTolerance) assertEquals(expected.y, actual.y, absoluteTolerance)
assertEquals(expected.z, actual.z, absoluteTolerance) assertEquals(expected.z, actual.z, absoluteTolerance)

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@ -6,6 +6,8 @@ kscience{
jvm() jvm()
js() js()
native() native()
wasm()
useCoroutines()
} }
//apply(plugin = "kotlinx-atomicfu") //apply(plugin = "kotlinx-atomicfu")
@ -21,7 +23,6 @@ kotlin.sourceSets {
dependencies { dependencies {
implementation(project(":kmath-for-real")) implementation(project(":kmath-for-real"))
implementation(projects.kmath.kmathStat) implementation(projects.kmath.kmathStat)
implementation("org.jetbrains.kotlinx:kotlinx-coroutines-test:1.6.0")
} }
} }
} }

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@ -47,7 +47,7 @@ public interface Histogram<in T : Any, out V, out B : Bin<T, V>> {
} }
} }
public interface HistogramBuilder<in T : Any, V : Any> { public interface HistogramBuilder<in T, V> {
/** /**
* The default value increment for a bin * The default value increment for a bin
@ -61,9 +61,9 @@ public interface HistogramBuilder<in T : Any, V : Any> {
} }
public fun <T : Any> HistogramBuilder<T, *>.put(point: Point<out T>): Unit = putValue(point) public fun <T> HistogramBuilder<T, *>.put(point: Point<T>): Unit = putValue(point)
public fun <T : Any> HistogramBuilder<T, *>.put(vararg point: T): Unit = put(point.asBuffer()) public inline fun <reified T> HistogramBuilder<T, *>.put(vararg point: T): Unit = put(point.asList().asBuffer())
public fun HistogramBuilder<Double, *>.put(vararg point: Number): Unit = public fun HistogramBuilder<Double, *>.put(vararg point: Number): Unit =
put(Float64Buffer(point.map { it.toDouble() }.toDoubleArray())) put(Float64Buffer(point.map { it.toDouble() }.toDoubleArray()))

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@ -12,6 +12,7 @@ import space.kscience.kmath.operations.Ring
import space.kscience.kmath.operations.ScaleOperations import space.kscience.kmath.operations.ScaleOperations
import space.kscience.kmath.operations.invoke import space.kscience.kmath.operations.invoke
import space.kscience.kmath.structures.Buffer import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.MutableBufferFactory
import kotlin.math.floor import kotlin.math.floor
@OptIn(UnstableKMathAPI::class) @OptIn(UnstableKMathAPI::class)
@ -46,6 +47,8 @@ public class UniformHistogram1DGroup<V : Any, A>(
public val startPoint: Double = 0.0, public val startPoint: Double = 0.0,
) : Group<Histogram1D<Double, V>>, ScaleOperations<Histogram1D<Double, V>> where A : Ring<V>, A : ScaleOperations<V> { ) : Group<Histogram1D<Double, V>>, ScaleOperations<Histogram1D<Double, V>> where A : Ring<V>, A : ScaleOperations<V> {
override val bufferFactory: MutableBufferFactory<Histogram1D<Double, V>> = MutableBufferFactory()
override val zero: UniformHistogram1D<V> = UniformHistogram1D(this, emptyMap()) override val zero: UniformHistogram1D<V> = UniformHistogram1D(this, emptyMap())
/** /**

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@ -37,6 +37,8 @@ public class UniformHistogramGroupND<V : Any, A : Field<V>>(
require(!lower.indices.any { upper[it] - lower[it] < 0 }) { "Range for one of axis is not strictly positive" } require(!lower.indices.any { upper[it] - lower[it] < 0 }) { "Range for one of axis is not strictly positive" }
} }
override val bufferFactory: MutableBufferFactory<HistogramND<Double, HyperSquareDomain, V>> = MutableBufferFactory()
public val dimension: Int get() = lower.size public val dimension: Int get() = lower.size
override val shape: ShapeND = ShapeND(IntArray(binNums.size) { binNums[it] + 2 }) override val shape: ShapeND = ShapeND(IntArray(binNums.size) { binNums[it] + 2 })
@ -87,7 +89,7 @@ public class UniformHistogramGroupND<V : Any, A : Field<V>>(
builder: HistogramBuilder<Double, V>.() -> Unit, builder: HistogramBuilder<Double, V>.() -> Unit,
): HistogramND<Double, HyperSquareDomain, V> { ): HistogramND<Double, HyperSquareDomain, V> {
val ndCounter: BufferND<ObjectCounter<V>> = val ndCounter: BufferND<ObjectCounter<V>> =
StructureND.buffered(shape) { Counter.of(valueAlgebraND.elementAlgebra) } BufferND(shape) { Counter.of(valueAlgebraND.elementAlgebra) }
val hBuilder = object : HistogramBuilder<Double, V> { val hBuilder = object : HistogramBuilder<Double, V> {
override val defaultValue: V get() = valueAlgebraND.elementAlgebra.one override val defaultValue: V get() = valueAlgebraND.elementAlgebra.one
@ -97,7 +99,8 @@ public class UniformHistogramGroupND<V : Any, A : Field<V>>(
} }
} }
hBuilder.apply(builder) hBuilder.apply(builder)
val values: BufferND<V> = BufferND(ndCounter.indices, ndCounter.buffer.mapToBuffer(valueBufferFactory) { it.value }) val values: BufferND<V> =
BufferND(ndCounter.indices, ndCounter.buffer.mapToBuffer(valueBufferFactory) { it.value })
return HistogramND(this, values) return HistogramND(this, values)
} }
@ -128,8 +131,7 @@ public fun <V : Any, A : Field<V>> Histogram.Companion.uniformNDFromRanges(
public fun Histogram.Companion.uniformDoubleNDFromRanges( public fun Histogram.Companion.uniformDoubleNDFromRanges(
vararg ranges: ClosedFloatingPointRange<Double>, vararg ranges: ClosedFloatingPointRange<Double>,
): UniformHistogramGroupND<Double, Float64Field> = ): UniformHistogramGroupND<Double, Float64Field> = uniformNDFromRanges(Floa64FieldOpsND, *ranges)
uniformNDFromRanges(Floa64FieldOpsND, *ranges, bufferFactory = ::Float64Buffer)
/** /**
@ -147,21 +149,18 @@ public fun <V : Any, A : Field<V>> Histogram.Companion.uniformNDFromRanges(
bufferFactory: BufferFactory<V> = valueAlgebraND.elementAlgebra.bufferFactory, bufferFactory: BufferFactory<V> = valueAlgebraND.elementAlgebra.bufferFactory,
): UniformHistogramGroupND<V, A> = UniformHistogramGroupND( ): UniformHistogramGroupND<V, A> = UniformHistogramGroupND(
valueAlgebraND, valueAlgebraND,
DoubleBuffer(
ranges ranges
.map(Pair<ClosedFloatingPointRange<Double>, Int>::first) .map(Pair<ClosedFloatingPointRange<Double>, Int>::first)
.map(ClosedFloatingPointRange<Double>::start) .map(ClosedFloatingPointRange<Double>::start)
), .asBuffer(),
DoubleBuffer(
ranges ranges
.map(Pair<ClosedFloatingPointRange<Double>, Int>::first) .map(Pair<ClosedFloatingPointRange<Double>, Int>::first)
.map(ClosedFloatingPointRange<Double>::endInclusive) .map(ClosedFloatingPointRange<Double>::endInclusive)
), .asBuffer(),
ranges.map(Pair<ClosedFloatingPointRange<Double>, Int>::second).toIntArray(), ranges.map(Pair<ClosedFloatingPointRange<Double>, Int>::second).toIntArray(),
valueBufferFactory = bufferFactory valueBufferFactory = bufferFactory
) )
public fun Histogram.Companion.uniformDoubleNDFromRanges( public fun Histogram.Companion.uniformDoubleNDFromRanges(
vararg ranges: Pair<ClosedFloatingPointRange<Double>, Int>, vararg ranges: Pair<ClosedFloatingPointRange<Double>, Int>,
): UniformHistogramGroupND<Double, Float64Field> = ): UniformHistogramGroupND<Double, Float64Field> = uniformNDFromRanges(Floa64FieldOpsND, *ranges)
uniformNDFromRanges(Floa64FieldOpsND, *ranges, bufferFactory = ::Float64Buffer)

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@ -14,10 +14,7 @@ import space.kscience.kmath.misc.sorted
import space.kscience.kmath.operations.Group import space.kscience.kmath.operations.Group
import space.kscience.kmath.operations.Ring import space.kscience.kmath.operations.Ring
import space.kscience.kmath.operations.ScaleOperations import space.kscience.kmath.operations.ScaleOperations
import space.kscience.kmath.structures.Buffer import space.kscience.kmath.structures.*
import space.kscience.kmath.structures.first
import space.kscience.kmath.structures.indices
import space.kscience.kmath.structures.last
import java.util.* import java.util.*
private fun <B : ClosedRange<Double>> TreeMap<Double, B>.getBin(value: Double): B? { private fun <B : ClosedRange<Double>> TreeMap<Double, B>.getBin(value: Double): B? {
@ -53,6 +50,8 @@ public class TreeHistogramGroup<V : Any, A>(
@PublishedApi internal val binFactory: (Double) -> DoubleDomain1D, @PublishedApi internal val binFactory: (Double) -> DoubleDomain1D,
) : Group<TreeHistogram<V>>, ScaleOperations<TreeHistogram<V>> where A : Ring<V>, A : ScaleOperations<V> { ) : Group<TreeHistogram<V>>, ScaleOperations<TreeHistogram<V>> where A : Ring<V>, A : ScaleOperations<V> {
override val bufferFactory: MutableBufferFactory<TreeHistogram<V>> = MutableBufferFactory()
internal inner class DomainCounter(val domain: DoubleDomain1D, val counter: Counter<V> = Counter.of(valueAlgebra)) : internal inner class DomainCounter(val domain: DoubleDomain1D, val counter: Counter<V> = Counter.of(valueAlgebra)) :
ClosedRange<Double> by domain.range ClosedRange<Double> by domain.range

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@ -7,6 +7,7 @@ package space.kscience.kmath.kotlingrad
import ai.hypergraph.kotlingrad.api.SFun import ai.hypergraph.kotlingrad.api.SFun
import ai.hypergraph.kotlingrad.api.SVar import ai.hypergraph.kotlingrad.api.SVar
import space.kscience.attributes.SafeType
import space.kscience.kmath.expressions.* import space.kscience.kmath.expressions.*
import space.kscience.kmath.operations.NumericAlgebra import space.kscience.kmath.operations.NumericAlgebra
@ -25,6 +26,8 @@ public class KotlingradExpression<T : Number, A : NumericAlgebra<T>>(
public val algebra: A, public val algebra: A,
public val mst: MST, public val mst: MST,
) : SpecialDifferentiableExpression<T, KotlingradExpression<T, A>> { ) : SpecialDifferentiableExpression<T, KotlingradExpression<T, A>> {
override val type: SafeType<T> = algebra.type
override fun invoke(arguments: Map<Symbol, T>): T = mst.interpret(algebra, arguments) override fun invoke(arguments: Map<Symbol, T>): T = mst.interpret(algebra, arguments)
override fun derivativeOrNull( override fun derivativeOrNull(

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@ -12,7 +12,7 @@ dependencies {
} }
readme { readme {
maturity = space.kscience.gradle.Maturity.EXPERIMENTAL maturity = space.kscience.gradle.Maturity.DEPRECATED
propertyByTemplate("artifact", rootProject.file("docs/templates/ARTIFACT-TEMPLATE.md")) propertyByTemplate("artifact", rootProject.file("docs/templates/ARTIFACT-TEMPLATE.md"))
feature(id = "nd4jarraystructure") { "NDStructure wrapper for INDArray" } feature(id = "nd4jarraystructure") { "NDStructure wrapper for INDArray" }
feature(id = "nd4jarrayrings") { "Rings over Nd4jArrayStructure of Int and Long" } feature(id = "nd4jarrayrings") { "Rings over Nd4jArrayStructure of Int and Long" }

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@ -6,8 +6,10 @@
package space.kscience.kmath.nd4j package space.kscience.kmath.nd4j
import org.nd4j.linalg.api.ndarray.INDArray import org.nd4j.linalg.api.ndarray.INDArray
import space.kscience.attributes.SafeType
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.* import space.kscience.kmath.nd.*
import space.kscience.kmath.operations.Float32Field
/** /**
* Represents a [StructureND] wrapping an [INDArray] object. * Represents a [StructureND] wrapping an [INDArray] object.
@ -31,6 +33,7 @@ public sealed class Nd4jArrayStructure<T> : MutableStructureND<T> {
} }
public data class Nd4jArrayIntStructure(override val ndArray: INDArray) : Nd4jArrayStructure<Int>(), StructureNDOfInt { public data class Nd4jArrayIntStructure(override val ndArray: INDArray) : Nd4jArrayStructure<Int>(), StructureNDOfInt {
override fun elementsIterator(): Iterator<Pair<IntArray, Int>> = ndArray.intIterator() override fun elementsIterator(): Iterator<Pair<IntArray, Int>> = ndArray.intIterator()
@OptIn(PerformancePitfall::class) @OptIn(PerformancePitfall::class)
@ -47,8 +50,10 @@ public data class Nd4jArrayIntStructure(override val ndArray: INDArray) : Nd4jAr
*/ */
public fun INDArray.asIntStructure(): Nd4jArrayIntStructure = Nd4jArrayIntStructure(this) public fun INDArray.asIntStructure(): Nd4jArrayIntStructure = Nd4jArrayIntStructure(this)
public data class Nd4jArrayDoubleStructure(override val ndArray: INDArray) : Nd4jArrayStructure<Double>(), StructureNDOfDouble { public data class Nd4jArrayDoubleStructure(override val ndArray: INDArray) : Nd4jArrayStructure<Double>(),
StructureNDOfDouble {
override fun elementsIterator(): Iterator<Pair<IntArray, Double>> = ndArray.realIterator() override fun elementsIterator(): Iterator<Pair<IntArray, Double>> = ndArray.realIterator()
@OptIn(PerformancePitfall::class) @OptIn(PerformancePitfall::class)
override fun get(index: IntArray): Double = ndArray.getDouble(*index) override fun get(index: IntArray): Double = ndArray.getDouble(*index)
@ -64,7 +69,11 @@ public data class Nd4jArrayDoubleStructure(override val ndArray: INDArray) : Nd4
public fun INDArray.asDoubleStructure(): Nd4jArrayStructure<Double> = Nd4jArrayDoubleStructure(this) public fun INDArray.asDoubleStructure(): Nd4jArrayStructure<Double> = Nd4jArrayDoubleStructure(this)
public data class Nd4jArrayFloatStructure(override val ndArray: INDArray) : Nd4jArrayStructure<Float>() { public data class Nd4jArrayFloatStructure(override val ndArray: INDArray) : Nd4jArrayStructure<Float>() {
override val type: SafeType<Float> get() = Float32Field.type
override fun elementsIterator(): Iterator<Pair<IntArray, Float>> = ndArray.floatIterator() override fun elementsIterator(): Iterator<Pair<IntArray, Float>> = ndArray.floatIterator()
@PerformancePitfall @PerformancePitfall
override fun get(index: IntArray): Float = ndArray.getFloat(*index) override fun get(index: IntArray): Float = ndArray.getFloat(*index)

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@ -6,6 +6,7 @@ kscience{
jvm() jvm()
js() js()
native() native()
wasm()
} }
kotlin.sourceSets { kotlin.sourceSets {

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@ -11,6 +11,10 @@ import space.kscience.kmath.expressions.Symbol
public class OptimizationValue<V>(type: SafeType<V>) : PolymorphicAttribute<V>(type) public class OptimizationValue<V>(type: SafeType<V>) : PolymorphicAttribute<V>(type)
public inline fun <reified T> AttributesBuilder<FunctionOptimization<T>>.value(value: T) {
set(OptimizationValue(safeTypeOf<T>()), value)
}
public enum class OptimizationDirection { public enum class OptimizationDirection {
MAXIMIZE, MAXIMIZE,
MINIMIZE MINIMIZE

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@ -34,10 +34,18 @@ public fun <T> AttributesBuilder<OptimizationProblem<T>>.startAt(startingPoint:
public class OptimizationCovariance<T> : OptimizationAttribute<NamedMatrix<T>>, public class OptimizationCovariance<T> : OptimizationAttribute<NamedMatrix<T>>,
PolymorphicAttribute<NamedMatrix<T>>(safeTypeOf()) PolymorphicAttribute<NamedMatrix<T>>(safeTypeOf())
public fun <T> AttributesBuilder<OptimizationProblem<T>>.covariance(covariance: NamedMatrix<T>) {
set(OptimizationCovariance(),covariance)
}
public class OptimizationResult<T>() : OptimizationAttribute<Map<Symbol, T>>, public class OptimizationResult<T>() : OptimizationAttribute<Map<Symbol, T>>,
PolymorphicAttribute<Map<Symbol, T>>(safeTypeOf()) PolymorphicAttribute<Map<Symbol, T>>(safeTypeOf())
public fun <T> AttributesBuilder<OptimizationProblem<T>>.result(result: Map<Symbol, T>) {
set(OptimizationResult(), result)
}
public val <T> OptimizationProblem<T>.resultOrNull: Map<Symbol, T>? get() = attributes[OptimizationResult()] public val <T> OptimizationProblem<T>.resultOrNull: Map<Symbol, T>? get() = attributes[OptimizationResult()]
public val <T> OptimizationProblem<T>.result: Map<Symbol, T> public val <T> OptimizationProblem<T>.result: Map<Symbol, T>

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@ -264,10 +264,10 @@ public object QowOptimizer : Optimizer<Double, XYFit> {
qow = QoWeight(problem, res.freeParameters) qow = QoWeight(problem, res.freeParameters)
res = qow.newtonianRun(maxSteps = iterations) res = qow.newtonianRun(maxSteps = iterations)
} }
val covariance = res.covariance()
return res.problem.withAttributes { return res.problem.withAttributes {
set(OptimizationResult(), res.freeParameters) result(res.freeParameters)
set(OptimizationCovariance(), covariance) covariance(res.covariance())
} }
} }
} }

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@ -6,6 +6,7 @@ kscience{
jvm() jvm()
js() js()
native() native()
wasm()
} }
kotlin.sourceSets { kotlin.sourceSets {

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@ -68,7 +68,7 @@ internal class MCScopeTest {
} }
@OptIn(DelicateCoroutinesApi::class) @OptIn(DelicateCoroutinesApi::class, ExperimentalCoroutinesApi::class)
fun compareResult(test: ATest) { fun compareResult(test: ATest) {
val res1 = runBlocking(Dispatchers.Default) { test() } val res1 = runBlocking(Dispatchers.Default) { test() }
val res2 = runBlocking(newSingleThreadContext("test")) { test() } val res2 = runBlocking(newSingleThreadContext("test")) { test() }

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@ -7,8 +7,9 @@ package space.kscience.kmath.symja
import org.matheclipse.core.eval.ExprEvaluator import org.matheclipse.core.eval.ExprEvaluator
import org.matheclipse.core.expression.F import org.matheclipse.core.expression.F
import space.kscience.kmath.expressions.SpecialDifferentiableExpression import space.kscience.attributes.SafeType
import space.kscience.kmath.expressions.MST import space.kscience.kmath.expressions.MST
import space.kscience.kmath.expressions.SpecialDifferentiableExpression
import space.kscience.kmath.expressions.Symbol import space.kscience.kmath.expressions.Symbol
import space.kscience.kmath.expressions.interpret import space.kscience.kmath.expressions.interpret
import space.kscience.kmath.operations.NumericAlgebra import space.kscience.kmath.operations.NumericAlgebra
@ -30,6 +31,8 @@ public class SymjaExpression<T : Number, A : NumericAlgebra<T>>(
public val mst: MST, public val mst: MST,
public val evaluator: ExprEvaluator = DEFAULT_EVALUATOR, public val evaluator: ExprEvaluator = DEFAULT_EVALUATOR,
) : SpecialDifferentiableExpression<T, SymjaExpression<T, A>> { ) : SpecialDifferentiableExpression<T, SymjaExpression<T, A>> {
override val type: SafeType<T> get() = algebra.type
override fun invoke(arguments: Map<Symbol, T>): T = mst.interpret(algebra, arguments) override fun invoke(arguments: Map<Symbol, T>): T = mst.interpret(algebra, arguments)
override fun derivativeOrNull(symbols: List<Symbol>): SymjaExpression<T, A> = SymjaExpression( override fun derivativeOrNull(symbols: List<Symbol>): SymjaExpression<T, A> = SymjaExpression(

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@ -10,6 +10,7 @@ import org.tensorflow.Output
import org.tensorflow.ndarray.NdArray import org.tensorflow.ndarray.NdArray
import org.tensorflow.op.core.Constant import org.tensorflow.op.core.Constant
import org.tensorflow.types.TFloat64 import org.tensorflow.types.TFloat64
import space.kscience.attributes.SafeType
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.expressions.Symbol import space.kscience.kmath.expressions.Symbol
@ -25,9 +26,9 @@ public class DoubleTensorFlowOutput(
graph: Graph, graph: Graph,
output: Output<TFloat64>, output: Output<TFloat64>,
) : TensorFlowOutput<Double, TFloat64>(graph, output) { ) : TensorFlowOutput<Double, TFloat64>(graph, output) {
override val type: SafeType<Double> get() = Float64Field.type
override fun org.tensorflow.Tensor.actualizeTensor(): NdArray<Double> = this as TFloat64 override fun org.tensorflow.Tensor.actualizeTensor(): NdArray<Double> = this as TFloat64
} }
internal fun ShapeND.toLongArray(): LongArray = LongArray(size) { get(it).toLong() } internal fun ShapeND.toLongArray(): LongArray = LongArray(size) { get(it).toLong() }

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@ -10,11 +10,19 @@ import org.tensorflow.Output
import org.tensorflow.ndarray.NdArray import org.tensorflow.ndarray.NdArray
import org.tensorflow.types.TInt32 import org.tensorflow.types.TInt32
import org.tensorflow.types.TInt64 import org.tensorflow.types.TInt64
import space.kscience.attributes.SafeType
import space.kscience.kmath.operations.Int32Ring
import space.kscience.kmath.operations.Int64Ring
import space.kscience.kmath.structures.Int32
import space.kscience.kmath.structures.Int64
public class IntTensorFlowOutput( public class IntTensorFlowOutput(
graph: Graph, graph: Graph,
output: Output<TInt32>, output: Output<TInt32>,
) : TensorFlowOutput<Int, TInt32>(graph, output) { ) : TensorFlowOutput<Int, TInt32>(graph, output) {
override val type: SafeType<Int32> get() = Int32Ring.type
override fun org.tensorflow.Tensor.actualizeTensor(): NdArray<Int> = this as TInt32 override fun org.tensorflow.Tensor.actualizeTensor(): NdArray<Int> = this as TInt32
} }
@ -22,5 +30,7 @@ public class LongTensorFlowOutput(
graph: Graph, graph: Graph,
output: Output<TInt64>, output: Output<TInt64>,
) : TensorFlowOutput<Long, TInt64>(graph, output) { ) : TensorFlowOutput<Long, TInt64>(graph, output) {
override val type: SafeType<Int64> get() = Int64Ring.type
override fun org.tensorflow.Tensor.actualizeTensor(): NdArray<Long> = this as TInt64 override fun org.tensorflow.Tensor.actualizeTensor(): NdArray<Long> = this as TInt64
} }

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@ -17,6 +17,7 @@ import org.tensorflow.op.core.*
import org.tensorflow.types.TInt32 import org.tensorflow.types.TInt32
import org.tensorflow.types.family.TNumber import org.tensorflow.types.family.TNumber
import org.tensorflow.types.family.TType import org.tensorflow.types.family.TType
import space.kscience.attributes.SafeType
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.UnsafeKMathAPI import space.kscience.kmath.UnsafeKMathAPI
import space.kscience.kmath.UnstableKMathAPI import space.kscience.kmath.UnstableKMathAPI
@ -39,8 +40,8 @@ public sealed interface TensorFlowTensor<T> : Tensor<T>
/** /**
* Static (eager) in-memory TensorFlow tensor * Static (eager) in-memory TensorFlow tensor
*/ */
@JvmInline public class TensorFlowArray<T>(override val type: SafeType<T>, public val tensor: NdArray<T>) : Tensor<T> {
public value class TensorFlowArray<T>(public val tensor: NdArray<T>) : Tensor<T> {
override val shape: ShapeND get() = ShapeND(tensor.shape().asArray().toIntArray()) override val shape: ShapeND get() = ShapeND(tensor.shape().asArray().toIntArray())
@PerformancePitfall @PerformancePitfall
@ -73,7 +74,7 @@ public abstract class TensorFlowOutput<T, TT : TType>(
internal val actualTensor by lazy { internal val actualTensor by lazy {
Session(graph).use { session -> Session(graph).use { session ->
TensorFlowArray(session.runner().fetch(output).run().first().actualizeTensor()) TensorFlowArray(type, session.runner().fetch(output).run().first().actualizeTensor())
} }
} }

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@ -12,6 +12,7 @@ kscience{
} }
} }
native() native()
wasm()
dependencies { dependencies {
api(projects.kmathCore) api(projects.kmathCore)

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@ -1,10 +0,0 @@
/*
* Copyright 2018-2024 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.tensors.api
import space.kscience.kmath.nd.MutableStructureND
public typealias Tensor<T> = MutableStructureND<T>

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@ -5,11 +5,14 @@
package space.kscience.kmath.tensors.api package space.kscience.kmath.tensors.api
import space.kscience.kmath.nd.MutableStructureND
import space.kscience.kmath.nd.RingOpsND import space.kscience.kmath.nd.RingOpsND
import space.kscience.kmath.nd.ShapeND import space.kscience.kmath.nd.ShapeND
import space.kscience.kmath.nd.StructureND import space.kscience.kmath.nd.StructureND
import space.kscience.kmath.operations.Ring import space.kscience.kmath.operations.Ring
public typealias Tensor<T> = MutableStructureND<T>
/** /**
* Algebra over a ring on [Tensor]. * Algebra over a ring on [Tensor].
* For more information: https://proofwiki.org/wiki/Definition:Algebra_over_Ring * For more information: https://proofwiki.org/wiki/Definition:Algebra_over_Ring

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@ -6,7 +6,6 @@
package space.kscience.kmath.tensors.core package space.kscience.kmath.tensors.core
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.linear.transposed
import space.kscience.kmath.nd.* import space.kscience.kmath.nd.*
import kotlin.math.abs import kotlin.math.abs
import kotlin.math.max import kotlin.math.max
@ -139,7 +138,7 @@ public fun DoubleTensorAlgebra.levenbergMarquardt(inputData: LMInput): LMResultI
if (inputData.nargin < 5) { if (inputData.nargin < 5) {
weight = fromArray( weight = fromArray(
ShapeND(intArrayOf(1, 1)), ShapeND(intArrayOf(1, 1)),
doubleArrayOf((inputData.realValues.transposed dot inputData.realValues).as1D()[0]) doubleArrayOf((inputData.realValues.transposed() dot inputData.realValues).as1D()[0])
).as2D() ).as2D()
} }
@ -266,12 +265,12 @@ public fun DoubleTensorAlgebra.levenbergMarquardt(inputData: LMInput): LMResultI
settings.funcCalls += 1 settings.funcCalls += 1
// val tmp = deltaY.times(weight) // val tmp = deltaY.times(weight)
var X2Try = deltaY.as2D().transposed dot deltaY.times(weight) // Chi-squared error criteria var X2Try = deltaY.as2D().transposed() dot deltaY.times(weight) // Chi-squared error criteria
val alpha = 1.0 val alpha = 1.0
if (updateType == 2) { // Quadratic if (updateType == 2) { // Quadratic
// One step of quadratic line update in the h direction for minimum X2 // One step of quadratic line update in the h direction for minimum X2
val alphaTensor = (jtWdy.transposed dot h) / ((X2Try - x2) / 2.0 + 2 * (jtWdy.transposed dot h)) val alphaTensor = (jtWdy.transposed() dot h) / ((X2Try - x2) / 2.0 + 2 * (jtWdy.transposed() dot h))
h = h dot alphaTensor h = h dot alphaTensor
pTry = (p + h).as2D() // update only [idx] elements pTry = (p + h).as2D() // update only [idx] elements
pTry = smallestElementComparison( pTry = smallestElementComparison(
@ -289,7 +288,7 @@ public fun DoubleTensorAlgebra.levenbergMarquardt(inputData: LMInput): LMResultI
) // residual error using p_try ) // residual error using p_try
settings.funcCalls += 1 settings.funcCalls += 1
X2Try = deltaY.as2D().transposed dot deltaY * weight // Chi-squared error criteria X2Try = deltaY.as2D().transposed() dot deltaY * weight // Chi-squared error criteria
} }
val rho = when (updateType) { // Nielsen val rho = when (updateType) { // Nielsen

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@ -6,12 +6,16 @@
package space.kscience.kmath.viktor package space.kscience.kmath.viktor
import org.jetbrains.bio.viktor.F64FlatArray import org.jetbrains.bio.viktor.F64FlatArray
import space.kscience.attributes.SafeType
import space.kscience.kmath.operations.Float64Field
import space.kscience.kmath.structures.Buffer import space.kscience.kmath.structures.Buffer
import space.kscience.kmath.structures.MutableBuffer import space.kscience.kmath.structures.MutableBuffer
@Suppress("NOTHING_TO_INLINE", "OVERRIDE_BY_INLINE") @Suppress("NOTHING_TO_INLINE", "OVERRIDE_BY_INLINE")
@JvmInline @JvmInline
public value class ViktorBuffer(public val flatArray: F64FlatArray) : MutableBuffer<Double> { public value class ViktorBuffer(public val flatArray: F64FlatArray) : MutableBuffer<Double> {
override val type: SafeType<Double> get() = Float64Field.type
override val size: Int override val size: Int
get() = flatArray.length get() = flatArray.length

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@ -6,13 +6,17 @@
package space.kscience.kmath.viktor package space.kscience.kmath.viktor
import org.jetbrains.bio.viktor.F64Array import org.jetbrains.bio.viktor.F64Array
import space.kscience.attributes.SafeType
import space.kscience.kmath.PerformancePitfall import space.kscience.kmath.PerformancePitfall
import space.kscience.kmath.nd.ColumnStrides import space.kscience.kmath.nd.ColumnStrides
import space.kscience.kmath.nd.MutableStructureND import space.kscience.kmath.nd.MutableStructureND
import space.kscience.kmath.nd.ShapeND import space.kscience.kmath.nd.ShapeND
import space.kscience.kmath.operations.Float64Field
@Suppress("OVERRIDE_BY_INLINE", "NOTHING_TO_INLINE") @Suppress("OVERRIDE_BY_INLINE", "NOTHING_TO_INLINE")
public class ViktorStructureND(public val f64Buffer: F64Array) : MutableStructureND<Double> { public class ViktorStructureND(public val f64Buffer: F64Array) : MutableStructureND<Double> {
override val type: SafeType<Double> get() = Float64Field.type
override val shape: ShapeND get() = ShapeND(f64Buffer.shape) override val shape: ShapeND get() = ShapeND(f64Buffer.shape)
@OptIn(PerformancePitfall::class) @OptIn(PerformancePitfall::class)