Update gradle plugin and build consistency

build.gradle.kts

@@ -55,7 +55,7 @@ subprojects {
 readme.readmeTemplate = file("docs/templates/README-TEMPLATE.md")
 
 ksciencePublish {
-    github("kmath", publish = false)
+    github("kmath")
     space()
     sonatype()
 }

buildSrc/build.gradle.kts

@@ -1,20 +1,30 @@
 plugins {
     `kotlin-dsl`
-    kotlin("plugin.serialization") version "1.5.21"
+    `version-catalog`
+    alias(npmlibs.plugins.kotlin.plugin.serialization)
 }
 
+java.targetCompatibility = JavaVersion.VERSION_11
+
 repositories {
     maven("https://repo.kotlin.link")
     mavenCentral()
     gradlePluginPortal()
 }
 
+val toolsVersion: String by extra
+val kotlinVersion = npmlibs.versions.kotlin.asProvider().get()
+val benchmarksVersion = npmlibs.versions.kotlinx.benchmark.get()
+
 dependencies {
-    api("org.jetbrains.kotlinx:kotlinx-serialization-json:1.2.2")
-    api("ru.mipt.npm:gradle-tools:0.10.7")
-    api("org.jetbrains.kotlinx:kotlinx-benchmark-plugin:0.3.1")
+    api("ru.mipt.npm:gradle-tools:$toolsVersion")
+    //plugins form benchmarks
+    api("org.jetbrains.kotlinx:kotlinx-benchmark-plugin:$benchmarksVersion")
+    api("org.jetbrains.kotlin:kotlin-allopen:$kotlinVersion")
+    //to be used inside build-script only
+    implementation(npmlibs.kotlinx.serialization.json)
 }
 
 kotlin.sourceSets.all {
-    languageSettings.useExperimentalAnnotation("kotlin.ExperimentalStdlibApi")
+    languageSettings.optIn("kotlin.OptIn")
 }

buildSrc/gradle.properties

@@ -0,0 +1,14 @@
+#
+# Copyright 2018-2021 KMath contributors.
+# Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
+#
+
+kotlin.code.style=official
+kotlin.mpp.stability.nowarn=true
+
+kotlin.jupyter.add.scanner=false
+
+org.gradle.configureondemand=true
+org.gradle.parallel=true
+
+toolsVersion=0.10.9-kotlin-1.6.10

buildSrc/settings.gradle.kts

@@ -0,0 +1,24 @@
+/*
+ * Copyright 2018-2021 KMath contributors.
+ * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
+ */
+
+
+enableFeaturePreview("TYPESAFE_PROJECT_ACCESSORS")
+enableFeaturePreview("VERSION_CATALOGS")
+
+dependencyResolutionManagement {
+
+    val toolsVersion: String by extra
+
+    repositories {
+        maven("https://repo.kotlin.link")
+        mavenCentral()
+    }
+
+    versionCatalogs {
+        create("npmlibs") {
+            from("ru.mipt.npm:version-catalog:$toolsVersion")
+        }
+    }
+}

buildSrc/src/main/kotlin/space/kscience/kmath/benchmarks/addBenchmarkProperties.kt

@@ -6,12 +6,15 @@
 package space.kscience.kmath.benchmarks
 
 import kotlinx.benchmark.gradle.BenchmarksExtension
-import kotlinx.serialization.*
-import kotlinx.serialization.json.*
+import kotlinx.serialization.decodeFromString
+import kotlinx.serialization.json.Json
 import org.gradle.api.Project
 import ru.mipt.npm.gradle.KScienceReadmeExtension
-import java.time.*
-import java.time.format.*
+import java.time.LocalDateTime
+import java.time.ZoneId
+import java.time.format.DateTimeFormatter
+import java.time.format.DateTimeFormatterBuilder
+import java.time.format.SignStyle
 import java.time.temporal.ChronoField.*
 
 private val ISO_DATE_TIME: DateTimeFormatter = DateTimeFormatterBuilder().run {
@@ -47,7 +50,7 @@ fun Project.addBenchmarkProperties() {
     rootProject.subprojects.forEach { p ->
         p.extensions.findByType(KScienceReadmeExtension::class.java)?.run {
             benchmarksProject.extensions.findByType(BenchmarksExtension::class.java)?.configurations?.forEach { cfg ->
-                property("benchmark${cfg.name.replaceFirstChar(Char::uppercase)}") {
+                property("benchmark${cfg.name.capitalize()}") {
                     val launches = benchmarksProject.buildDir.resolve("reports/benchmarks/${cfg.name}")
 
                     val resDirectory = launches.listFiles()?.maxByOrNull {

examples/src/main/kotlin/space/kscience/kmath/stat/DistributionDemo.kt

@@ -7,7 +7,7 @@ package space.kscience.kmath.stat
 
 import kotlinx.coroutines.runBlocking
 import space.kscience.kmath.chains.Chain
-import space.kscience.kmath.chains.collectWithState
+import space.kscience.kmath.chains.combineWithState
 import space.kscience.kmath.distributions.NormalDistribution
 
 private data class AveragingChainState(var num: Int = 0, var value: Double = 0.0)
@@ -15,11 +15,11 @@ private data class AveragingChainState(var num: Int = 0, var value: Double = 0.0
 /**
  * Averaging.
  */
-private fun Chain<Double>.mean(): Chain<Double> = collectWithState(AveragingChainState(), { it.copy() }) { chain ->
+private fun Chain<Double>.mean(): Chain<Double> = combineWithState(AveragingChainState(), { it.copy() }) { chain ->
     val next = chain.next()
     num++
     value += next
-    return@collectWithState value / num
+    return@combineWithState value / num
 }
 
 

gradle.properties

@@ -6,11 +6,9 @@
 kotlin.code.style=official
 kotlin.mpp.stability.nowarn=true
 
-#kotlin.mpp.enableGranularSourceSetsMetadata=true
-#kotlin.native.enableDependencyPropagation=false
-
 kotlin.jupyter.add.scanner=false
 
 org.gradle.configureondemand=true
-org.gradle.jvmargs=-XX:MaxMetaspaceSize=2G
 org.gradle.parallel=true
+
+toolsVersion=0.10.9-kotlin-1.6.10

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-7.2-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-7.3.3-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

kmath-coroutines/src/commonMain/kotlin/space/kscience/kmath/chains/Chain.kt

@@ -10,6 +10,7 @@ import kotlinx.coroutines.flow.FlowCollector
 import kotlinx.coroutines.flow.flow
 import kotlinx.coroutines.sync.Mutex
 import kotlinx.coroutines.sync.withLock
+import space.kscience.kmath.misc.UnstableKMathAPI
 
 /**
  * A not-necessary-Markov chain of some type
@@ -124,20 +125,22 @@ public fun <T> Chain<T>.filter(block: (T) -> Boolean): Chain<T> = object : Chain
 /**
  * Map the whole chain
  */
-public fun <T, R> Chain<T>.collect(mapper: suspend (Chain<T>) -> R): Chain<R> = object : Chain<R> {
-    override suspend fun next(): R = mapper(this@collect)
-    override suspend fun fork(): Chain<R> = this@collect.fork().collect(mapper)
+@UnstableKMathAPI
+public fun <T, R> Chain<T>.combine(mapper: suspend (Chain<T>) -> R): Chain<R> = object : Chain<R> {
+    override suspend fun next(): R = mapper(this@combine)
+    override suspend fun fork(): Chain<R> = this@combine.fork().combine(mapper)
 }
 
-public fun <T, S, R> Chain<T>.collectWithState(
+@UnstableKMathAPI
+public fun <T, S, R> Chain<T>.combineWithState(
     state: S,
     stateFork: (S) -> S,
     mapper: suspend S.(Chain<T>) -> R,
 ): Chain<R> = object : Chain<R> {
-    override suspend fun next(): R = state.mapper(this@collectWithState)
+    override suspend fun next(): R = state.mapper(this@combineWithState)
 
     override suspend fun fork(): Chain<R> =
-        this@collectWithState.fork().collectWithState(stateFork(state), stateFork, mapper)
+        this@combineWithState.fork().combineWithState(stateFork(state), stateFork, mapper)
 }
 
 /**

kmath-stat/src/commonMain/kotlin/space/kscience/kmath/stat/Sampler.kt

@@ -7,8 +7,11 @@ package space.kscience.kmath.stat
 
 import kotlinx.coroutines.flow.first
 import space.kscience.kmath.chains.Chain
-import space.kscience.kmath.chains.collect
-import space.kscience.kmath.structures.*
+import space.kscience.kmath.chains.combine
+import space.kscience.kmath.structures.Buffer
+import space.kscience.kmath.structures.BufferFactory
+import space.kscience.kmath.structures.DoubleBuffer
+import space.kscience.kmath.structures.IntBuffer
 import kotlin.jvm.JvmName
 
 /**
@@ -36,7 +39,7 @@ public fun <T : Any> Sampler<T>.sampleBuffer(
     //creating temporary storage once
     val tmp = ArrayList<T>(size)
 
-    return sample(generator).collect { chain ->
+    return sample(generator).combine { chain ->
         //clear list from previous run
         tmp.clear()
         //Fill list

kmath-viktor/src/main/kotlin/space/kscience/kmath/viktor/ViktorFieldOpsND.kt

@@ -14,7 +14,7 @@ import space.kscience.kmath.operations.ExtendedFieldOps
 import space.kscience.kmath.operations.NumbersAddOps
 import space.kscience.kmath.operations.PowerOperations
 
-@OptIn(UnstableKMathAPI::class)
+@OptIn(UnstableKMathAPI::class, PerformancePitfall::class)
 @Suppress("OVERRIDE_BY_INLINE", "NOTHING_TO_INLINE")
 public open class ViktorFieldOpsND :
     FieldOpsND<Double, DoubleField>,

settings.gradle.kts

@@ -1,21 +1,24 @@
-pluginManagement {
+rootProject.name = "kmath"
+
+enableFeaturePreview("TYPESAFE_PROJECT_ACCESSORS")
+enableFeaturePreview("VERSION_CATALOGS")
+
+dependencyResolutionManagement {
+
+    val toolsVersion: String by extra
+
     repositories {
         maven("https://repo.kotlin.link")
         mavenCentral()
-        gradlePluginPortal()
     }
 
-    val kotlinVersion = "1.6.0"
-
-    plugins {
-        id("org.jetbrains.kotlinx.benchmark") version "0.3.1"
-        kotlin("multiplatform") version kotlinVersion
-        kotlin("plugin.allopen") version kotlinVersion
+    versionCatalogs {
+        create("npmlibs") {
+            from("ru.mipt.npm:version-catalog:$toolsVersion")
+        }
     }
 }
 
-rootProject.name = "kmath"
-
 include(
     ":kmath-memory",
     ":kmath-complex",