Refactor for build tools 0.13.0

build.gradle.kts

@@ -1,3 +1,6 @@
+import space.kscience.gradle.useApache2Licence
+import space.kscience.gradle.useSPCTeam
+
 plugins {
     id("space.kscience.gradle.project")
     id("org.jetbrains.kotlinx.kover") version "0.5.0"
@@ -68,8 +71,12 @@ subprojects {
 readme.readmeTemplate = file("docs/templates/README-TEMPLATE.md")
 
 ksciencePublish {
-    github("kmath", addToRelease = false)
-    space()
+    pom("https://github.com/SciProgCentre/kmath") {
+        useApache2Licence()
+        useSPCTeam()
+    }
+    github("kmath", "SciProgCentre", addToRelease = false)
+    space("https://maven.pkg.jetbrains.space/mipt-npm/p/sci/dev")
     sonatype()
 }
 

examples/src/main/kotlin/space/kscience/kmath/structures/StreamDoubleFieldND.kt

@@ -5,6 +5,7 @@
 
 package space.kscience.kmath.structures
 
+import space.kscience.kmath.misc.PerformancePitfall
 import space.kscience.kmath.nd.*
 import space.kscience.kmath.operations.DoubleField
 import space.kscience.kmath.operations.ExtendedField
@@ -49,6 +50,7 @@ class StreamDoubleFieldND(override val shape: IntArray) : FieldND<Double, Double
         return BufferND(strides, array.asBuffer())
     }
 
+    @OptIn(PerformancePitfall::class)
     override fun StructureND<Double>.map(
         transform: DoubleField.(Double) -> Double,
     ): BufferND<Double> {
@@ -56,6 +58,7 @@ class StreamDoubleFieldND(override val shape: IntArray) : FieldND<Double, Double
         return BufferND(strides, array.asBuffer())
     }
 
+    @OptIn(PerformancePitfall::class)
     override fun StructureND<Double>.mapIndexed(
         transform: DoubleField.(index: IntArray, Double) -> Double,
     ): BufferND<Double> {
@@ -69,6 +72,7 @@ class StreamDoubleFieldND(override val shape: IntArray) : FieldND<Double, Double
         return BufferND(strides, array.asBuffer())
     }
 
+    @OptIn(PerformancePitfall::class)
     override fun zip(
         left: StructureND<Double>,
         right: StructureND<Double>,

examples/src/main/kotlin/space/kscience/kmath/tensors/OLSWithSVD.kt

@@ -5,6 +5,7 @@
 
 package space.kscience.kmath.tensors
 
+import space.kscience.kmath.misc.PerformancePitfall
 import space.kscience.kmath.operations.invoke
 import space.kscience.kmath.tensors.core.DoubleTensor
 import space.kscience.kmath.tensors.core.DoubleTensorAlgebra
@@ -13,6 +14,7 @@ import kotlin.math.abs
 
 // OLS estimator using SVD
 
+@OptIn(PerformancePitfall::class)
 fun main() {
     //seed for random
     val randSeed = 100500L

examples/src/main/kotlin/space/kscience/kmath/tensors/neuralNetwork.kt

@@ -3,8 +3,11 @@
  * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
  */
 
+@file:OptIn(PerformancePitfall::class)
+
 package space.kscience.kmath.tensors
 
+import space.kscience.kmath.misc.PerformancePitfall
 import space.kscience.kmath.operations.invoke
 import space.kscience.kmath.tensors.core.BroadcastDoubleTensorAlgebra
 import space.kscience.kmath.tensors.core.DoubleTensor

gradle.properties

@@ -12,4 +12,4 @@ org.gradle.configureondemand=true
 org.gradle.parallel=true
 org.gradle.jvmargs=-Xmx4096m
 
-toolsVersion=0.12.0-kotlin-1.7.20-Beta
+toolsVersion=0.13.0-kotlin-1.7.20-Beta

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-7.4.2-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-7.5-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

kmath-ast/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience{
+    native()
 }
 
 kotlin.js {

kmath-ast/src/nativeMain/kotlin/space/kscience/kmath/ast/rendering/multiplatformToString.kt

@@ -0,0 +1,9 @@
+/*
+ * Copyright 2018-2022 KMath contributors.
+ * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
+ */
+
+package space.kscience.kmath.ast.rendering
+
+internal actual fun Double.multiplatformToString(): String = toString()
+internal actual fun Float.multiplatformToString(): String = toString()

kmath-ast/src/nativeTest/kotlin/space/kscience/kmath/ast/runCompilerTest.kt

@@ -0,0 +1,10 @@
+/*
+ * Copyright 2018-2022 KMath contributors.
+ * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
+ */
+
+package space.kscience.kmath.ast
+
+internal actual inline fun runCompilerTest(action: CompilerTestContext.() -> Unit) {
+    //doNothing
+}

kmath-commons/build.gradle.kts

@@ -1,6 +1,5 @@
 plugins {
-    kotlin("jvm")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.jvm")
 }
 
 description = "Commons math binding for kmath"

kmath-complex/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
-    id("space.kscience.gradle.native")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience {
+    native()
 }
 
 kotlin.sourceSets {
@@ -20,14 +22,14 @@ readme {
     feature(
         id = "complex",
         ref = "src/commonMain/kotlin/space/kscience/kmath/complex/Complex.kt"
-    ){
+    ) {
         "Complex numbers operations"
     }
 
     feature(
         id = "quaternion",
         ref = "src/commonMain/kotlin/space/kscience/kmath/complex/Quaternion.kt"
-    ){
+    ) {
         "Quaternions and their composition"
     }
 }

kmath-core/build.gradle.kts

@@ -1,6 +1,13 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
+
+    dependencies {
+        api(project(":kmath-memory"))
+    }
 }
 
 kotlin.sourceSets {
@@ -10,20 +17,8 @@ kotlin.sourceSets {
             it.optIn("space.kscience.kmath.misc.PerformancePitfall")
             it.optIn("space.kscience.kmath.misc.UnstableKMathAPI")
         }
-
-    commonMain {
-        dependencies {
-            api(project(":kmath-memory"))
-        }
-    }
 }
 
-//generateUml {
-//    classTree {
-//
-//    }
-//}
-
 readme {
     description = "Core classes, algebra definitions, basic linear algebra"
     maturity = space.kscience.gradle.Maturity.DEVELOPMENT

kmath-coroutines/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
-    id("space.kscience.gradle.native")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets {

kmath-dimensions/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 description = "A proof of concept module for adding type-safe dimensions to structures"

kmath-ejml/build.gradle.kts

@@ -1,8 +1,7 @@
 import space.kscience.kmath.ejml.codegen.ejmlCodegen
 
 plugins {
-    kotlin("jvm")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.jvm")
 }
 
 dependencies {

kmath-ejml/src/main/kotlin/space/kscience/kmath/ejml/_generated.kt

@@ -1,6 +1,6 @@
 /*
- * Copyright 2018-2022 KMath contributors.
- * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
+ * Copyright 2018-2021 KMath contributors.
+ * Use of this source code is governed by the Apache 2.0 license that can be found in the LICENSE file.
  */
 
 /* This file is generated with buildSrc/src/main/kotlin/space/kscience/kmath/ejml/codegen/ejmlCodegen.kt */

kmath-for-real/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
-    id("space.kscience.gradle.native")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets.commonMain {

kmath-functions/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
-    id("space.kscience.gradle.native")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience{
+    native()
 }
 
 description = "Functions, integration and interpolation"

kmath-geometry/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets.commonMain {

kmath-histograms/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 //apply(plugin = "kotlinx-atomicfu")

kmath-kotlingrad/build.gradle.kts

@@ -1,6 +1,5 @@
 plugins {
-    kotlin("jvm")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.jvm")
 }
 
 kotlin.sourceSets

kmath-memory/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience {
+    native()
 }
 
 readme {

kmath-multik/src/commonTest/kotlin/space/kscience/kmath/multik/MultikNDTest.kt

@@ -6,6 +6,7 @@
 package space.kscience.kmath.multik
 
 import org.jetbrains.kotlinx.multik.default.DefaultEngine
+import space.kscience.kmath.misc.PerformancePitfall
 import space.kscience.kmath.nd.StructureND
 import space.kscience.kmath.nd.one
 import space.kscience.kmath.operations.DoubleField
@@ -14,6 +15,7 @@ import space.kscience.kmath.tensors.core.tensorAlgebra
 import kotlin.test.Test
 import kotlin.test.assertTrue
 
+@OptIn(PerformancePitfall::class)
 internal class MultikNDTest {
     val multikAlgebra = MultikDoubleAlgebra(DefaultEngine())
 

kmath-nd4j/build.gradle.kts

@@ -1,6 +1,5 @@
 plugins {
-    kotlin("jvm")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.jvm")
 }
 
 description = "ND4J NDStructure implementation and according NDAlgebra classes"

kmath-nd4j/src/main/kotlin/space/kscience/kmath/nd4j/Nd4jArrayAlgebra.kt

@@ -45,6 +45,7 @@ public sealed interface Nd4jArrayAlgebra<T, out C : Algebra<T>> : AlgebraND<T, C
         return newStruct
     }
 
+    @OptIn(PerformancePitfall::class)
     override fun StructureND<T>.mapIndexed(
         transform: C.(index: IntArray, T) -> T,
     ): Nd4jArrayStructure<T> {
@@ -53,6 +54,7 @@ public sealed interface Nd4jArrayAlgebra<T, out C : Algebra<T>> : AlgebraND<T, C
         return new
     }
 
+    @OptIn(PerformancePitfall::class)
     override fun zip(
         left: StructureND<T>,
         right: StructureND<T>,

kmath-nd4j/src/main/kotlin/space/kscience/kmath/nd4j/Nd4jTensorAlgebra.kt

@@ -40,12 +40,15 @@ public sealed interface Nd4jTensorAlgebra<T : Number, A : Field<T>> : AnalyticTe
 
     override fun structureND(shape: Shape, initializer: A.(IntArray) -> T): Nd4jArrayStructure<T>
 
+    @OptIn(PerformancePitfall::class)
     override fun StructureND<T>.map(transform: A.(T) -> T): Nd4jArrayStructure<T> =
         structureND(shape) { index -> elementAlgebra.transform(get(index)) }
 
+    @OptIn(PerformancePitfall::class)
     override fun StructureND<T>.mapIndexed(transform: A.(index: IntArray, T) -> T): Nd4jArrayStructure<T> =
         structureND(shape) { index -> elementAlgebra.transform(index, get(index)) }
 
+    @OptIn(PerformancePitfall::class)
     override fun zip(left: StructureND<T>, right: StructureND<T>, transform: A.(T, T) -> T): Nd4jArrayStructure<T> {
         require(left.shape.contentEquals(right.shape))
         return structureND(left.shape) { index -> elementAlgebra.transform(left[index], right[index]) }

kmath-optimization/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets {

kmath-polynomial/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    // Disable native target to avoid CI crashes
-//    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 description = "Polynomials, rational functions, and utilities"

kmath-stat/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets {

kmath-symja/build.gradle.kts

@@ -4,8 +4,7 @@
  */
 
 plugins {
-    kotlin("jvm")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.jvm")
 }
 
 description = "Symja integration module"

kmath-tensorflow/src/main/kotlin/space/kscience/kmath/tensorflow/DoubleTensorFlowAlgebra.kt

@@ -93,6 +93,7 @@ public fun DoubleField.produceWithTF(
  *
  * The resulting tensors are available outside of scope
  */
+@OptIn(UnstableKMathAPI::class)
 public fun DoubleField.produceMapWithTF(
     block: DoubleTensorFlowAlgebra.() -> Map<Symbol, StructureND<Double>>,
 ): Map<Symbol, StructureND<Double>> = Graph().use { graph ->

kmath-tensorflow/src/test/kotlin/space/kscience/kmath/tensorflow/DoubleTensorFlowOps.kt

@@ -6,6 +6,7 @@
 package space.kscience.kmath.tensorflow
 
 import org.junit.jupiter.api.Test
+import space.kscience.kmath.misc.UnstableKMathAPI
 import space.kscience.kmath.nd.get
 import space.kscience.kmath.nd.structureND
 import space.kscience.kmath.operations.DoubleField
@@ -13,6 +14,7 @@ import space.kscience.kmath.tensors.core.DoubleTensorAlgebra
 import space.kscience.kmath.tensors.core.DoubleTensorAlgebra.Companion.sum
 import kotlin.test.assertEquals
 
+@OptIn(UnstableKMathAPI::class)
 class DoubleTensorFlowOps {
     @Test
     fun basicOps() {

kmath-tensors/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
-    id("space.kscience.gradle.native")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets {

kmath-trajectory/build.gradle.kts

@@ -1,7 +1,9 @@
 plugins {
-    kotlin("multiplatform")
-    id("space.kscience.gradle.common")
-    id("space.kscience.gradle.native")
+    id("space.kscience.gradle.mpp")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets.commonMain {

kmath-viktor/build.gradle.kts

@@ -1,13 +1,12 @@
 plugins {
-    kotlin("jvm")
-    id("space.kscience.gradle.common")
+    id("space.kscience.gradle.jvm")
 }
 
 description = "Binding for https://github.com/JetBrains-Research/viktor"
 
 dependencies {
     api(project(":kmath-core"))
-    api("org.jetbrains.bio:viktor:1.1.0")
+    api("org.jetbrains.bio:viktor:1.2.0")
 }
 
 readme {

kmath-viktor/src/main/kotlin/space/kscience/kmath/viktor/ViktorBuffer.kt

@@ -13,7 +13,7 @@ import space.kscience.kmath.structures.MutableBuffer
 @JvmInline
 public value class ViktorBuffer(public val flatArray: F64FlatArray) : MutableBuffer<Double> {
     override val size: Int
-        get() = flatArray.size
+        get() = flatArray.length
 
     override inline fun get(index: Int): Double = flatArray[index]
 

test-utils/build.gradle.kts

@@ -1,6 +1,9 @@
 plugins {
     id("space.kscience.gradle.mpp")
-    id("space.kscience.gradle.native")
+}
+
+kscience{
+    native()
 }
 
 kotlin.sourceSets {