From a68ebef26dda77e015c1d8144999c40083ee303f Mon Sep 17 00:00:00 2001 From: mrFendel Date: Thu, 13 Apr 2023 03:38:10 +0300 Subject: [PATCH] zScore for variance Ratio Test --- .../kscience/kmath/series/VarianceRatio.kt | 42 ++++++++++++++----- 1 file changed, 32 insertions(+), 10 deletions(-) diff --git a/kmath-stat/src/commonMain/kotlin/space/kscience/kmath/series/VarianceRatio.kt b/kmath-stat/src/commonMain/kotlin/space/kscience/kmath/series/VarianceRatio.kt index aa616487b..2dfcd6b00 100644 --- a/kmath-stat/src/commonMain/kotlin/space/kscience/kmath/series/VarianceRatio.kt +++ b/kmath-stat/src/commonMain/kotlin/space/kscience/kmath/series/VarianceRatio.kt @@ -5,26 +5,48 @@ package space.kscience.kmath.series +import space.kscience.kmath.distributions.NormalDistribution import space.kscience.kmath.operations.DoubleBufferOps.Companion.map +import space.kscience.kmath.operations.DoubleField.pow import space.kscience.kmath.operations.algebra import space.kscience.kmath.operations.bufferAlgebra import space.kscience.kmath.operations.fold -fun varianceRatio(series: Series, shift: Int): Double { - val mean = series.fold(0.0) {acc, value -> acc + value} / series.size +// TODO: add p-value +public data class VarianceRatioTestResult(val varianceRatio: Double, val zScore: Double) + +public fun varianceRatioTest(series: Series, shift: Int, homoscedastic: Boolean): VarianceRatioTestResult { + + val sum = { x: Double, y: Double -> x + y } + + val mean = series.fold(0.0, sum) / series.size val demeanedSquares = series.map { power(it - mean, 2) } - val variance = demeanedSquares.fold(0.0) {acc, value -> acc + value} + val variance = demeanedSquares.fold(0.0, sum) with(Double.algebra.bufferAlgebra.seriesAlgebra()) { - val seriesAgg = series - for (i in -1..-shift + 1) { - seriesAgg.shiftOp(i) { v1, v2 -> v1 + v2 } + for (i in -1..-shift + 1) { series.shiftOp(i) { v1, v2 -> v1 + v2 } } + val demeanedSquaresAgg = series.map { power(it - shift * mean, 2) } + val varianceAgg = demeanedSquaresAgg.fold(0.0, sum) + + val varianceRatio = + varianceAgg * (series.size - 1) / variance / (series.size - shift + 1) / (1 - shift / series.size) + + + // calculating asymptotic variance + var phi: Double + if (homoscedastic) { // under homoscedastic null hypothesis + phi = 2 * (2 * shift - 1.0) * (shift - 1.0) / (3 * shift * series.size) + } else { // under homoscedastic null hypothesis + phi = 0.0 + for (j in 1.. v1 * v2 } + val delta = series.size * shiftedProd.fold(0.0, sum) / variance.pow(2) + phi += delta * 4 * (shift - j) * (shift - j) / shift / shift // TODO: refactor with square + } } - val demeanedSquaresAgg = seriesAgg.map { power(it - shift * mean, 2) } - val varianceAgg = demeanedSquaresAgg.fold(0.0) { acc, value -> acc + value } - - return varianceAgg * (series.size - 1) / variance / (series.size - shift + 1) / (1 - shift / series.size) + val zScore = (varianceRatio - 1) / phi.pow(0.5) + return VarianceRatioTestResult(varianceRatio, zScore) } }