Merge branch 'dev' into altavir/tensor-algebra

This commit is contained in:
Alexander Nozik 2021-01-19 23:08:36 +03:00
commit 9ef32db236
5 changed files with 30 additions and 18 deletions

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@ -4,27 +4,28 @@
### Added
- `fun` annotation for SAM interfaces in library
- Explicit `public` visibility for all public APIs
- Better trigonometric and hyperbolic functions for `AutoDiffField` (https://github.com/mipt-npm/kmath/pull/140).
- Better trigonometric and hyperbolic functions for `AutoDiffField` (https://github.com/mipt-npm/kmath/pull/140)
- Automatic README generation for features (#139)
- Native support for `memory`, `core` and `dimensions`
- `kmath-ejml` to supply EJML SimpleMatrix wrapper (https://github.com/mipt-npm/kmath/pull/136).
- `kmath-ejml` to supply EJML SimpleMatrix wrapper (https://github.com/mipt-npm/kmath/pull/136)
- A separate `Symbol` entity, which is used for global unbound symbol.
- A `Symbol` indexing scope.
- Basic optimization API for Commons-math.
- Chi squared optimization for array-like data in CM
- `Fitting` utility object in prob/stat
- ND4J support module submitting `NDStructure` and `NDAlgebra` over `INDArray`.
- Coroutine-deterministic Monte-Carlo scope with a random number generator.
- Some minor utilities to `kmath-for-real`.
- ND4J support module submitting `NDStructure` and `NDAlgebra` over `INDArray`
- Coroutine-deterministic Monte-Carlo scope with a random number generator
- Some minor utilities to `kmath-for-real`
- Generic operation result parameter to `MatrixContext`
- New `MatrixFeature` interfaces for matrix decompositions
### Changed
- Package changed from `scientifik` to `kscience.kmath`.
- Gradle version: 6.6 -> 6.7.1
- Package changed from `scientifik` to `kscience.kmath`
- Gradle version: 6.6 -> 6.8
- Minor exceptions refactor (throwing `IllegalArgumentException` by argument checks instead of `IllegalStateException`)
- `Polynomial` secondary constructor made function.
- Kotlin version: 1.3.72 -> 1.4.20
- `kmath-ast` doesn't depend on heavy `kotlin-reflect` library.
- `Polynomial` secondary constructor made function
- Kotlin version: 1.3.72 -> 1.4.21
- `kmath-ast` doesn't depend on heavy `kotlin-reflect` library
- Full autodiff refactoring based on `Symbol`
- `kmath-prob` renamed to `kmath-stat`
- Grid generators moved to `kmath-for-real`

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@ -43,7 +43,7 @@ public class BufferMatrix<T : Any>(
if (this === other) return true
return when (other) {
is NDStructure<*> -> NDStructure.equals(this, other)
is NDStructure<*> -> NDStructure.contentEquals(this, other)
else -> false
}
}

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@ -54,7 +54,7 @@ public interface NDStructure<T> {
/**
* Indicates whether some [NDStructure] is equal to another one.
*/
public fun equals(st1: NDStructure<*>, st2: NDStructure<*>): Boolean {
public fun contentEquals(st1: NDStructure<*>, st2: NDStructure<*>): Boolean {
if (st1 === st2) return true
// fast comparison of buffers if possible
@ -275,7 +275,7 @@ public abstract class NDBuffer<T> : NDStructure<T> {
override fun elements(): Sequence<Pair<IntArray, T>> = strides.indices().map { it to this[it] }
override fun equals(other: Any?): Boolean {
return NDStructure.equals(this, other as? NDStructure<*> ?: return false)
return NDStructure.contentEquals(this, other as? NDStructure<*> ?: return false)
}
override fun hashCode(): Int {

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@ -24,7 +24,7 @@ public class LazyNDStructure<T>(
}
public override fun equals(other: Any?): Boolean {
return NDStructure.equals(this, other as? NDStructure<*> ?: return false)
return NDStructure.contentEquals(this, other as? NDStructure<*> ?: return false)
}
public override fun hashCode(): Int {

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@ -3,6 +3,7 @@ package kscience.kmath.ejml
import kscience.kmath.linear.*
import kscience.kmath.misc.UnstableKMathAPI
import kscience.kmath.structures.Matrix
import kscience.kmath.structures.NDStructure
import kscience.kmath.structures.RealBuffer
import org.ejml.dense.row.factory.DecompositionFactory_DDRM
import org.ejml.simple.SimpleMatrix
@ -15,7 +16,7 @@ import kotlin.reflect.cast
* @property origin the underlying [SimpleMatrix].
* @author Iaroslav Postovalov
*/
public inline class EjmlMatrix(
public class EjmlMatrix(
public val origin: SimpleMatrix,
) : Matrix<Double> {
public override val rowNum: Int get() = origin.numRows()
@ -49,7 +50,7 @@ public inline class EjmlMatrix(
override val q: Matrix<Double> by lazy { EjmlMatrix(SimpleMatrix(qr.getQ(null, false))) }
override val r: Matrix<Double> by lazy { EjmlMatrix(SimpleMatrix(qr.getR(null, false))) }
}
CholeskyDecompositionFeature::class -> object : CholeskyDecompositionFeature<Double> {
CholeskyDecompositionFeature::class -> object : CholeskyDecompositionFeature<Double> {
override val l: Matrix<Double> by lazy {
val cholesky =
DecompositionFactory_DDRM.chol(rowNum, true).apply { decompose(origin.ddrm.copy()) }
@ -57,7 +58,7 @@ public inline class EjmlMatrix(
EjmlMatrix(SimpleMatrix(cholesky.getT(null))) + LFeature
}
}
LupDecompositionFeature::class -> object : LupDecompositionFeature<Double> {
LupDecompositionFeature::class -> object : LupDecompositionFeature<Double> {
private val lup by lazy {
DecompositionFactory_DDRM.lu(origin.numRows(), origin.numCols()).apply { decompose(origin.ddrm.copy()) }
}
@ -73,7 +74,17 @@ public inline class EjmlMatrix(
override val p: Matrix<Double> by lazy { EjmlMatrix(SimpleMatrix(lup.getRowPivot(null))) }
}
else -> null
}?.let{type.cast(it)}
}?.let { type.cast(it) }
public override operator fun get(i: Int, j: Int): Double = origin[i, j]
override fun equals(other: Any?): Boolean {
if (this === other) return true
if (other !is Matrix<*>) return false
return NDStructure.contentEquals(this, other)
}
override fun hashCode(): Int = origin.hashCode()
}