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Fix benchmarks

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This commit is contained in:
Alexander Nozik 2021-04-16 22:43:10 +03:00
parent 00a2ce2152
commit 8689d29e4c
21 changed files with 158 additions and 108 deletions
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6
.idea/copyright/kmath.xml
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@ -1,6 +0,0 @@
<component name="CopyrightManager">
<copyright>
<option name="notice" value="Copyright 2018-2021 KMath contributors.&#10;Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file." />
<option name="myName" value="kmath" />
</copyright>
</component>

7
.idea/copyright/profiles_settings.xml
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@ -1,7 +0,0 @@
<component name="CopyrightManager">
<settings default="kmath">
<module2copyright>
<element module="Project Files" copyright="kmath" />
</module2copyright>
</settings>
</component>

1
CHANGELOG.md
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@ -22,6 +22,7 @@
- Redesign advanced Chain API
- Redesign MST. Remove MSTExpression.
- Move MST to core
- Separated benchmarks and examples
### Deprecated

147
benchmarks/build.gradle.kts Normal file
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@ -0,0 +1,147 @@
/*
* Copyright 2018-2021 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
import ru.mipt.npm.gradle.Maturity
plugins {
kotlin("multiplatform")
kotlin("plugin.allopen")
id("org.jetbrains.kotlinx.benchmark")
}
allOpen.annotation("org.openjdk.jmh.annotations.State")
sourceSets.register("benchmarks")
repositories {
mavenCentral()
jcenter()
maven("https://repo.kotlin.link")
maven("https://clojars.org/repo")
maven("https://dl.bintray.com/egor-bogomolov/astminer/")
maven("https://dl.bintray.com/hotkeytlt/maven")
maven("https://jitpack.io")
maven {
setUrl("http://logicrunch.research.it.uu.se/maven/")
isAllowInsecureProtocol = true
}
}
kotlin {
jvm()
sourceSets {
val commonMain by getting {
dependencies {
implementation(project(":kmath-ast"))
implementation(project(":kmath-core"))
implementation(project(":kmath-coroutines"))
implementation(project(":kmath-complex"))
implementation(project(":kmath-stat"))
implementation(project(":kmath-dimensions"))
implementation(project(":kmath-for-real"))
implementation("org.jetbrains.kotlinx:kotlinx-benchmark-runtime:0.3.0")
}
}
val jvmMain by getting {
dependencies {
implementation(project(":kmath-commons"))
implementation(project(":kmath-ejml"))
implementation(project(":kmath-nd4j"))
implementation(project(":kmath-kotlingrad"))
implementation(project(":kmath-viktor"))
implementation("org.nd4j:nd4j-native:1.0.0-beta7")
// uncomment if your system supports AVX2
// val os = System.getProperty("os.name")
//
// if (System.getProperty("os.arch") in arrayOf("x86_64", "amd64")) when {
// os.startsWith("Windows") -> implementation("org.nd4j:nd4j-native:1.0.0-beta7:windows-x86_64-avx2")
// os == "Linux" -> implementation("org.nd4j:nd4j-native:1.0.0-beta7:linux-x86_64-avx2")
// os == "Mac OS X" -> implementation("org.nd4j:nd4j-native:1.0.0-beta7:macosx-x86_64-avx2")
// } else
// implementation("org.nd4j:nd4j-native-platform:1.0.0-beta7")
}
}
}
}
// Configure benchmark
benchmark {
// Setup configurations
targets {
register("jvm")
}
configurations.register("buffer") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("BufferBenchmark")
}
configurations.register("dot") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("DotBenchmark")
}
configurations.register("expressions") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("ExpressionsInterpretersBenchmark")
}
configurations.register("matrixInverse") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("MatrixInverseBenchmark")
}
configurations.register("bigInt") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("BigIntBenchmark")
}
}
// Fix kotlinx-benchmarks bug
afterEvaluate {
val jvmBenchmarkJar by tasks.getting(org.gradle.jvm.tasks.Jar::class) {
duplicatesStrategy = org.gradle.api.file.DuplicatesStrategy.EXCLUDE
}
}
kotlin.sourceSets.all {
with(languageSettings) {
useExperimentalAnnotation("kotlin.contracts.ExperimentalContracts")
useExperimentalAnnotation("kotlin.ExperimentalUnsignedTypes")
useExperimentalAnnotation("space.kscience.kmath.misc.UnstableKMathAPI")
}
}
tasks.withType<org.jetbrains.kotlin.gradle.tasks.KotlinCompile> {
kotlinOptions {
jvmTarget = "11"
freeCompilerArgs = freeCompilerArgs + "-Xjvm-default=all"
}
}
readme {
maturity = Maturity.EXPERIMENTAL
}

0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/ArrayBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/ArrayBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/BigIntBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/BigIntBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/BufferBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/BufferBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/DotBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/DotBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/ExpressionsInterpretersBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/ExpressionsInterpretersBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/MatrixInverseBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/MatrixInverseBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/NDFieldBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/NDFieldBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/ViktorBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/ViktorBenchmark.kt
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0
examples/src/benchmarks/kotlin/space/kscience/kmath/benchmarks/ViktorLogBenchmark.kt → benchmarks/src/jvmMain/kotlin/space/kscience/kmath/benchmarks/ViktorLogBenchmark.kt
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2
build.gradle.kts
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@ -25,7 +25,7 @@ allprojects {
}
group = "space.kscience"
version = "0.3.0-dev-6"
version = "0.3.0-dev-7"
}
subprojects {

67
examples/build.gradle.kts
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@ -8,29 +8,20 @@ import ru.mipt.npm.gradle.Maturity
plugins {
kotlin("jvm")
kotlin("plugin.allopen")
id("org.jetbrains.kotlinx.benchmark")
}
allOpen.annotation("org.openjdk.jmh.annotations.State")
sourceSets.register("benchmarks")
repositories {
mavenCentral()
jcenter()
maven("https://repo.kotlin.link")
maven("https://clojars.org/repo")
maven("https://dl.bintray.com/egor-bogomolov/astminer/")
maven("https://dl.bintray.com/hotkeytlt/maven")
maven("https://dl.bintray.com/kotlin/kotlin-eap")
maven("https://dl.bintray.com/kotlin/kotlinx")
maven("https://dl.bintray.com/mipt-npm/dev")
maven("https://dl.bintray.com/mipt-npm/kscience")
maven("https://jitpack.io")
maven{
setUrl("http://logicrunch.research.it.uu.se/maven/")
isAllowInsecureProtocol = true
}
mavenCentral()
}
dependencies {
@ -48,7 +39,6 @@ dependencies {
implementation(project(":kmath-for-real"))
implementation("org.deeplearning4j:deeplearning4j-core:1.0.0-beta7")
implementation("org.nd4j:nd4j-native:1.0.0-beta7")
// uncomment if your system supports AVX2
@ -61,62 +51,9 @@ dependencies {
// } else
implementation("org.nd4j:nd4j-native-platform:1.0.0-beta7")
implementation("org.jetbrains.kotlinx:kotlinx-io:0.2.0-npm-dev-11")
implementation("org.jetbrains.kotlinx:kotlinx-benchmark-runtime:0.3.0")
implementation("org.slf4j:slf4j-simple:1.7.30")
// plotting
implementation("kscience.plotlykt:plotlykt-server:0.3.1-dev")
"benchmarksImplementation"("org.jetbrains.kotlinx:kotlinx.benchmark.runtime-jvm:0.2.0-dev-20")
"benchmarksImplementation"(sourceSets.main.get().output + sourceSets.main.get().runtimeClasspath)
}
// Configure benchmark
benchmark {
// Setup configurations
targets.register("benchmarks")
// This one matches sourceSet name above
configurations.register("buffer") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("BufferBenchmark")
}
configurations.register("dot") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("DotBenchmark")
}
configurations.register("expressions") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("ExpressionsInterpretersBenchmark")
}
configurations.register("matrixInverse") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("MatrixInverseBenchmark")
}
configurations.register("bigInt") {
warmups = 1 // number of warmup iterations
iterations = 3 // number of iterations
iterationTime = 500 // time in seconds per iteration
iterationTimeUnit = "ms" // time unity for iterationTime, default is seconds
include("BigIntBenchmark")
}
implementation("space.kscience:plotlykt-server:0.4.0-dev-2")
}
kotlin.sourceSets.all {

6
examples/src/main/kotlin/space/kscience/kmath/commons/fit/fitWithAutoDiff.kt
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@ -7,9 +7,6 @@ package space.kscience.kmath.commons.fit
import kotlinx.html.br
import kotlinx.html.h3
import kscience.plotly.*
import kscience.plotly.models.ScatterMode
import kscience.plotly.models.TraceValues
import space.kscience.kmath.commons.optimization.chiSquared
import space.kscience.kmath.commons.optimization.minimize
import space.kscience.kmath.distributions.NormalDistribution
@ -22,6 +19,9 @@ import space.kscience.kmath.real.step
import space.kscience.kmath.stat.RandomGenerator
import space.kscience.kmath.structures.asIterable
import space.kscience.kmath.structures.toList
import space.kscience.plotly.*
import space.kscience.plotly.models.ScatterMode
import space.kscience.plotly.models.TraceValues
import kotlin.math.pow
import kotlin.math.sqrt

4
kmath-complex/build.gradle.kts
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@ -12,10 +12,6 @@ plugins {
}
kotlin.sourceSets {
all {
languageSettings.useExperimentalAnnotation("kscience.kmath.misc.UnstableKMathAPI")
}
commonMain {
dependencies {
api(project(":kmath-core"))

5
kmath-dimensions/build.gradle.kts
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@ -1,8 +1,3 @@
/*
* Copyright 2018-2021 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
plugins {
kotlin("multiplatform")
id("ru.mipt.npm.gradle.common")

9
kmath-ejml/build.gradle.kts
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@ -1,10 +1,3 @@
/*
* Copyright 2018-2021 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
import ru.mipt.npm.gradle.Maturity
plugins {
kotlin("jvm")
id("ru.mipt.npm.gradle.common")
@ -16,7 +9,7 @@ dependencies {
}
readme {
maturity = Maturity.PROTOTYPE
maturity = ru.mipt.npm.gradle.Maturity.PROTOTYPE
propertyByTemplate("artifact", rootProject.file("docs/templates/ARTIFACT-TEMPLATE.md"))
feature(

9
kmath-for-real/build.gradle.kts
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@ -1,10 +1,3 @@
/*
* Copyright 2018-2021 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
import ru.mipt.npm.gradle.Maturity
plugins {
kotlin("multiplatform")
id("ru.mipt.npm.gradle.common")
@ -22,7 +15,7 @@ readme {
All operations are specialized to work with `Double` numbers without declaring algebraic contexts.
One can still use generic algebras though.
""".trimIndent()
maturity = Maturity.EXPERIMENTAL
maturity = ru.mipt.npm.gradle.Maturity.EXPERIMENTAL
propertyByTemplate("artifact", rootProject.file("docs/templates/ARTIFACT-TEMPLATE.md"))
feature(

3
settings.gradle.kts
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@ -44,5 +44,6 @@ include(
":kmath-ast",
":kmath-ejml",
":kmath-kotlingrad",
":examples"
":examples",
":benchmarks"
)