Moved to scientifik plugin. Removed depricated Vector

build.gradle.kts

@@ -1,9 +1,18 @@
-val kmathVersion by extra("0.1.3")
+plugins {
+    id("scientifik.mpp") version "0.1.3" apply false
+    id("scientifik.publish") version "0.1.3" apply false
+    id("kotlinx-atomicfu") version "0.12.9" apply false
+}
+
+val kmathVersion by extra("0.1.4-dev-1")
+
+val bintrayRepo by extra("scientifik")
+val githubProject by extra("kmath")
 
 allprojects {
     repositories {
         jcenter()
-        maven("https://kotlin.bintray.com/kotlinx")
+        maven("https://dl.bintray.com/kotlin/kotlinx")
     }
 
     group = "scientifik"
@@ -11,8 +20,7 @@ allprojects {
 }
 
 subprojects {
-    apply(plugin = "dokka-publish")
     if (name.startsWith("kmath")) {
-        apply(plugin = "npm-publish")
+        apply(plugin = "scientifik.publish")
     }
-}
+}

buildSrc/build.gradle.kts

@@ -1,20 +0,0 @@
-plugins {
-    `kotlin-dsl`
-}
-
-repositories {
-    gradlePluginPortal()
-    jcenter()
-}
-
-val kotlinVersion = "1.3.31"
-
-// Add plugins used in buildSrc as dependencies, also we should specify version only here
-dependencies {
-    implementation("org.jetbrains.kotlin:kotlin-gradle-plugin:$kotlinVersion")
-    implementation("org.jfrog.buildinfo:build-info-extractor-gradle:4.9.6")
-    implementation("com.jfrog.bintray.gradle:gradle-bintray-plugin:1.8.4")
-    implementation("org.jetbrains.dokka:dokka-gradle-plugin:0.9.18")
-    implementation("com.moowork.gradle:gradle-node-plugin:1.3.1")
-    implementation("org.openjfx:javafx-plugin:0.0.7")
-}

buildSrc/src/main/kotlin/Versions.kt

@@ -1,9 +0,0 @@
-// Instead of defining runtime properties and use them dynamically
-// define version in buildSrc and have autocompletion and compile-time check
-// Also dependencies itself can be moved here
-object Versions {
-    val ioVersion = "0.1.8"
-    val coroutinesVersion = "1.2.1"
-    val atomicfuVersion = "0.12.6"
-    val serializationVersion = "0.11.0"
-}

buildSrc/src/main/kotlin/dokka-publish.gradle.kts

@@ -1,75 +0,0 @@
-import org.jetbrains.dokka.gradle.DokkaTask
-import org.jetbrains.kotlin.gradle.dsl.KotlinJvmProjectExtension
-import org.jetbrains.kotlin.gradle.dsl.KotlinMultiplatformExtension
-
-plugins {
-    id("org.jetbrains.dokka")
-    `maven-publish`
-}
-
-afterEvaluate {
-
-    extensions.findByType<KotlinMultiplatformExtension>()?.apply{
-        val dokka by tasks.getting(DokkaTask::class) {
-            outputFormat = "html"
-            outputDirectory = "$buildDir/javadoc"
-            jdkVersion = 8
-
-            kotlinTasks {
-                // dokka fails to retrieve sources from MPP-tasks so we only define the jvm task
-                listOf(tasks.getByPath("compileKotlinJvm"))
-            }
-            sourceRoot {
-                // assuming only single source dir
-                path = sourceSets["commonMain"].kotlin.srcDirs.first().toString()
-                platforms = listOf("Common")
-            }
-            // although the JVM sources are now taken from the task,
-            // we still define the jvm source root to get the JVM marker in the generated html
-            sourceRoot {
-                // assuming only single source dir
-                path = sourceSets["jvmMain"].kotlin.srcDirs.first().toString()
-                platforms = listOf("JVM")
-            }
-        }
-
-        val kdocJar by tasks.registering(Jar::class) {
-            group = JavaBasePlugin.DOCUMENTATION_GROUP
-            dependsOn(dokka)
-            archiveClassifier.set("javadoc")
-            from("$buildDir/javadoc")
-        }
-
-        configure<PublishingExtension> {
-
-            targets.all {
-                val publication = publications.findByName(name) as MavenPublication
-
-                // Patch publications with fake javadoc
-                publication.artifact(kdocJar.get())
-            }
-        }
-    }
-
-
-    extensions.findByType<KotlinJvmProjectExtension>()?.apply{
-        val dokka by tasks.getting(DokkaTask::class) {
-            outputFormat = "html"
-            outputDirectory = "$buildDir/javadoc"
-            jdkVersion = 8
-        }
-
-        val kdocJar by tasks.registering(Jar::class) {
-            group = JavaBasePlugin.DOCUMENTATION_GROUP
-            dependsOn(dokka)
-            archiveClassifier.set("javadoc")
-            from("$buildDir/javadoc")
-        }
-
-        configure<PublishingExtension> {
-            publications.filterIsInstance<MavenPublication>().forEach { publication ->
-                publication.artifact(kdocJar.get())
-            }
-        }
-    }
-}

buildSrc/src/main/kotlin/js-test.gradle.kts

@@ -1,44 +0,0 @@
-import com.moowork.gradle.node.npm.NpmTask
-import com.moowork.gradle.node.task.NodeTask
-import org.gradle.kotlin.dsl.*
-import org.jetbrains.kotlin.gradle.tasks.Kotlin2JsCompile
-
-plugins {
-    id("com.moowork.node")
-    kotlin("multiplatform")
-}
-
-node {
-    nodeModulesDir = file("$buildDir/node_modules")
-}
-
-val compileKotlinJs by tasks.getting(Kotlin2JsCompile::class)
-val compileTestKotlinJs by tasks.getting(Kotlin2JsCompile::class)
-
-val populateNodeModules by tasks.registering(Copy::class) {
-    dependsOn(compileKotlinJs)
-    from(compileKotlinJs.destinationDir)
-
-    kotlin.js().compilations["test"].runtimeDependencyFiles.forEach {
-        if (it.exists() && !it.isDirectory) {
-            from(zipTree(it.absolutePath).matching { include("*.js") })
-        }
-    }
-
-    into("$buildDir/node_modules")
-}
-
-val installMocha by tasks.registering(NpmTask::class) {
-    setWorkingDir(buildDir)
-    setArgs(listOf("install", "mocha"))
-}
-
-val runMocha by tasks.registering(NodeTask::class) {
-    dependsOn(compileTestKotlinJs, populateNodeModules, installMocha)
-    setScript(file("$buildDir/node_modules/mocha/bin/mocha"))
-    setArgs(listOf(compileTestKotlinJs.outputFile))
-}
-
-tasks["jsTest"].dependsOn(runMocha)
-
-

buildSrc/src/main/kotlin/npm-multiplatform.gradle.kts

@@ -1,103 +0,0 @@
-import com.jfrog.bintray.gradle.tasks.BintrayUploadTask
-import org.gradle.api.publish.maven.internal.artifact.FileBasedMavenArtifact
-import org.jfrog.gradle.plugin.artifactory.task.ArtifactoryTask
-
-plugins {
-    kotlin("multiplatform")
-    `maven-publish`
-}
-
-
-kotlin {
-    jvm {
-        compilations.all {
-            kotlinOptions {
-                jvmTarget = "1.8"
-            }
-        }
-    }
-
-    js {
-        compilations.all {
-            kotlinOptions {
-                metaInfo = true
-                sourceMap = true
-                sourceMapEmbedSources = "always"
-                moduleKind = "commonjs"
-            }
-        }
-
-        compilations.named("main") {
-            kotlinOptions {
-                main = "call"
-            }
-        }
-    }
-
-    sourceSets {
-        val commonMain by getting {
-            dependencies {
-                api(kotlin("stdlib"))
-            }
-        }
-        val commonTest by getting {
-            dependencies {
-                implementation(kotlin("test-common"))
-                implementation(kotlin("test-annotations-common"))
-            }
-        }
-        val jvmMain by getting {
-            dependencies {
-                api(kotlin("stdlib-jdk8"))
-            }
-        }
-        val jvmTest by getting {
-            dependencies {
-                implementation(kotlin("test"))
-                implementation(kotlin("test-junit"))
-            }
-        }
-        val jsMain by getting {
-            dependencies {
-                api(kotlin("stdlib-js"))
-            }
-        }
-        val jsTest by getting {
-            dependencies {
-                implementation(kotlin("test-js"))
-            }
-        }
-    }
-
-    targets.all {
-        sourceSets.all {
-            languageSettings.progressiveMode = true
-            languageSettings.enableLanguageFeature("InlineClasses")
-        }
-    }
-
-    // Apply JS test configuration
-    val runJsTests by ext(false)
-
-    if (runJsTests) {
-        apply(plugin = "js-test")
-    }
-
-}
-
-//workaround for bintray and artifactory
-project.tasks.filter { it is ArtifactoryTask || it is BintrayUploadTask }.forEach {
-    it.doFirst {
-        project.configure<PublishingExtension> {
-            publications.filterIsInstance<MavenPublication>()
-                .forEach { publication ->
-                    val moduleFile = project.buildDir.resolve("publications/${publication.name}/module.json")
-                    if (moduleFile.exists()) {
-                        publication.artifact(object : FileBasedMavenArtifact(moduleFile) {
-                            override fun getDefaultExtension() = "module"
-                        })
-                    }
-                }
-        }
-    }
-}

buildSrc/src/main/kotlin/npm-publish.gradle.kts

@@ -1,120 +0,0 @@
-@file:Suppress("UnstableApiUsage")
-
-import com.jfrog.bintray.gradle.tasks.BintrayUploadTask
-import groovy.lang.GroovyObject
-import org.gradle.api.publish.maven.internal.artifact.FileBasedMavenArtifact
-import org.jfrog.gradle.plugin.artifactory.dsl.PublisherConfig
-import org.jfrog.gradle.plugin.artifactory.dsl.ResolverConfig
-
-// Old bintray.gradle script converted to real Gradle plugin (precompiled script plugin)
-// It now has own dependencies and support type safe accessors
-// Syntax is pretty close to what we had in Groovy
-// (excluding Property.set and bintray dynamic configs)
-
-plugins {
-    `maven-publish`
-    id("com.jfrog.bintray")
-    id("com.jfrog.artifactory")
-}
-
-val vcs = "https://github.com/mipt-npm/kmath"
-val bintrayRepo = "https://bintray.com/mipt-npm/scientifik"
-
-// Configure publishing
-publishing {
-    repositories {
-        maven(bintrayRepo)
-    }
-
-    // Process each publication we have in this project
-    publications.filterIsInstance<MavenPublication>().forEach { publication ->
-
-        // use type safe pom config GSL instead of old dynamic
-        publication.pom {
-            name.set(project.name)
-            description.set(project.description)
-            url.set(vcs)
-
-            licenses {
-                license {
-                    name.set("The Apache Software License, Version 2.0")
-                    url.set("http://www.apache.org/licenses/LICENSE-2.0.txt")
-                    distribution.set("repo")
-                }
-            }
-            developers {
-                developer {
-                    id.set("MIPT-NPM")
-                    name.set("MIPT nuclear physics methods laboratory")
-                    organization.set("MIPT")
-                    organizationUrl.set("http://npm.mipt.ru")
-                }
-
-            }
-            scm {
-                url.set(vcs)
-            }
-        }
-    }
-
-}
-
-bintray {
-    user = findProperty("bintrayUser") as? String ?: System.getenv("BINTRAY_USER")
-    key = findProperty("bintrayApiKey") as? String? ?: System.getenv("BINTRAY_API_KEY")
-    publish = true
-    override = true // for multi-platform Kotlin/Native publishing
-
-    // We have to use delegateClosureOf because bintray supports only dynamic groovy syntax
-    // this is a problem of this plugin
-    pkg.apply {
-        userOrg = "mipt-npm"
-        repo = "scientifik"
-        name = project.name
-        issueTrackerUrl = "$vcs/issues"
-        setLicenses("Apache-2.0")
-        vcsUrl = vcs
-        version.apply {
-            name = project.version.toString()
-            vcsTag = project.version.toString()
-            released = java.util.Date().toString()
-        }
-    }
-
-    //workaround bintray bug
-    afterEvaluate {
-        setPublications(*publishing.publications.names.toTypedArray())
-    }
-
-    tasks {
-        bintrayUpload {
-            dependsOn(publishToMavenLocal)
-        }
-    }
-}
-
-artifactory {
-    val artifactoryUser: String? by project
-    val artifactoryPassword: String? by project
-    val artifactoryContextUrl = "http://npm.mipt.ru:8081/artifactory"
-
-    setContextUrl(artifactoryContextUrl)//The base Artifactory URL if not overridden by the publisher/resolver
-    publish(delegateClosureOf<PublisherConfig> {
-        repository(delegateClosureOf<GroovyObject> {
-            setProperty("repoKey", "gradle-dev-local")
-            setProperty("username", artifactoryUser)
-            setProperty("password", artifactoryPassword)
-        })
-
-        defaults(delegateClosureOf<GroovyObject> {
-            invokeMethod("publications", arrayOf("jvm", "js", "kotlinMultiplatform", "metadata"))
-        })
-    })
-    resolve(delegateClosureOf<ResolverConfig> {
-        repository(delegateClosureOf<GroovyObject> {
-            setProperty("repoKey", "gradle-dev")
-            setProperty("username", artifactoryUser)
-            setProperty("password", artifactoryPassword)
-        })
-    })
-}

examples/build.gradle.kts

@@ -1,12 +1,11 @@
-import org.jetbrains.gradle.benchmarks.JvmBenchmarkTarget
 import org.jetbrains.kotlin.allopen.gradle.AllOpenExtension
 import org.jetbrains.kotlin.gradle.tasks.KotlinCompile
 
 plugins {
     java
     kotlin("jvm")
-    kotlin("plugin.allopen") version "1.3.31"
+    kotlin("plugin.allopen") version "1.3.41"
-    id("org.jetbrains.gradle.benchmarks.plugin") version "0.1.7-dev-24"
+    id("kotlinx.benchmark") version "0.2.0-dev-2"
 }
 
 configure<AllOpenExtension> {
@@ -16,7 +15,8 @@ configure<AllOpenExtension> {
 repositories {
     maven("https://dl.bintray.com/kotlin/kotlin-eap")
     maven("http://dl.bintray.com/kyonifer/maven")
-    maven("https://dl.bintray.com/orangy/maven")
+    maven ("https://dl.bintray.com/orangy/maven")
+
     mavenCentral()
 }
 
@@ -30,9 +30,9 @@ dependencies {
     implementation(project(":kmath-commons"))
     implementation(project(":kmath-koma"))
     implementation("com.kyonifer:koma-core-ejml:0.12")
-    implementation("org.jetbrains.kotlinx:kotlinx-io-jvm:0.1.5")
+    implementation("org.jetbrains.kotlinx:kotlinx-io-jvm:${Scientifik.ioVersion}")
 
-    implementation("org.jetbrains.gradle.benchmarks:runtime:0.1.7-dev-24")
+    implementation("org.jetbrains.kotlinx:kotlinx.benchmark.runtime:0.2.0-dev-2")
 
 
     "benchmarksCompile"(sourceSets.main.get().compileClasspath)
@@ -43,10 +43,7 @@ benchmark {
     // Setup configurations
     targets {
         // This one matches sourceSet name above
-        register("benchmarks") {
+        register("benchmarks")
-            this as JvmBenchmarkTarget
-            jmhVersion = "1.21"
-        }
     }
 
     configurations {

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-5.4-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-5.5.1-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

gradlew

@@ -7,7 +7,7 @@
 # you may not use this file except in compliance with the License.
 # You may obtain a copy of the License at
 #
-#      http://www.apache.org/licenses/LICENSE-2.0
+#      https://www.apache.org/licenses/LICENSE-2.0
 #
 # Unless required by applicable law or agreed to in writing, software
 # distributed under the License is distributed on an "AS IS" BASIS,

gradlew.bat

@@ -5,7 +5,7 @@
 @rem you may not use this file except in compliance with the License.
 @rem You may obtain a copy of the License at
 @rem
-@rem      http://www.apache.org/licenses/LICENSE-2.0
+@rem      https://www.apache.org/licenses/LICENSE-2.0
 @rem
 @rem Unless required by applicable law or agreed to in writing, software
 @rem distributed under the License is distributed on an "AS IS" BASIS,

kmath-core/build.gradle.kts

@@ -1,5 +1,5 @@
 plugins {
-    `npm-multiplatform`
+    id("scientifik.mpp")
 }
 
 kotlin.sourceSets {

kmath-core/src/commonMain/kotlin/scientifik/kmath/linear/LUPDecomposition.kt

@@ -183,7 +183,7 @@ fun <T : Any> LUPDecomposition<T>.solve(type: KClass<T>, matrix: Matrix<T>): Mat
         elementContext.run {
 
             // Apply permutations to b
-            val bp = create { i, j -> zero }
+            val bp = create { _, _ -> zero }
 
             for (row in 0 until pivot.size) {
                 val bpRow = bp.row(row)

kmath-core/src/commonMain/kotlin/scientifik/kmath/linear/LinearAlgrebra.kt

@@ -3,10 +3,12 @@ package scientifik.kmath.linear
 import scientifik.kmath.operations.Field
 import scientifik.kmath.operations.Norm
 import scientifik.kmath.operations.RealField
+import scientifik.kmath.structures.Buffer
 import scientifik.kmath.structures.Matrix
 import scientifik.kmath.structures.VirtualBuffer
 import scientifik.kmath.structures.asSequence
 
+typealias Point<T> = Buffer<T>
 
 /**
  * A group of methods to resolve equation A dot X = B, where A and B are matrices or vectors
@@ -17,20 +19,6 @@ interface LinearSolver<T : Any> {
     fun inverse(a: Matrix<T>): Matrix<T>
 }
 
-/**
- * Convert vector to array (copying content of array)
- */
-fun <T : Any> Array<T>.toVector(field: Field<T>) = Vector.generic(size, field) { this[it] }
-
-fun DoubleArray.toVector() = Vector.real(this.size) { this[it] }
-fun List<Double>.toVector() = Vector.real(this.size) { this[it] }
-
-object VectorL2Norm : Norm<Point<out Number>, Double> {
-    override fun norm(arg: Point<out Number>): Double =
-        kotlin.math.sqrt(arg.asSequence().sumByDouble { it.toDouble() })
-}
-
-typealias RealVector = Vector<Double, RealField>
 typealias RealMatrix = Matrix<Double>
 
 /**

kmath-core/src/commonMain/kotlin/scientifik/kmath/linear/RealVector.kt

@@ -0,0 +1,48 @@
+package scientifik.kmath.linear
+
+import scientifik.kmath.operations.Field
+import scientifik.kmath.operations.Norm
+import scientifik.kmath.operations.RealField
+import scientifik.kmath.operations.SpaceElement
+import scientifik.kmath.structures.Buffer
+import scientifik.kmath.structures.DoubleBuffer
+import scientifik.kmath.structures.asBuffer
+import scientifik.kmath.structures.asSequence
+
+fun DoubleArray.asVector() = RealVector(this.asBuffer())
+fun List<Double>.asVector() = RealVector(this.asBuffer())
+
+
+object VectorL2Norm : Norm<Point<out Number>, Double> {
+    override fun norm(arg: Point<out Number>): Double =
+        kotlin.math.sqrt(arg.asSequence().sumByDouble { it.toDouble() })
+}
+
+inline class RealVector(val point: Point<Double>) :
+    SpaceElement<Point<Double>, RealVector, VectorSpace<Double, RealField>>, Point<Double> {
+    override val context: VectorSpace<Double, RealField> get() = space(point.size)
+
+    override fun unwrap(): Point<Double> = point
+
+    override fun Point<Double>.wrap(): RealVector = RealVector(this)
+
+    override val size: Int get() = point.size
+
+    override fun get(index: Int): Double = point[index]
+
+    override fun iterator(): Iterator<Double> = point.iterator()
+
+    companion object {
+
+        private val spaceCache = HashMap<Int, BufferVectorSpace<Double, RealField>>()
+
+        inline operator fun invoke(dim:Int, initalizer: (Int)-> Double) = RealVector(DoubleBuffer(dim, initalizer))
+
+        operator fun invoke(vararg values: Double) = values.asVector()
+
+        fun space(dim: Int) =
+            spaceCache.getOrPut(dim) {
+                BufferVectorSpace(dim, RealField) { size, init -> Buffer.real(size, init) }
+            }
+    }
+}

kmath-core/src/commonMain/kotlin/scientifik/kmath/linear/Vector.kt

@@ -1,71 +0,0 @@
-package scientifik.kmath.linear
-
-import scientifik.kmath.operations.RealField
-import scientifik.kmath.operations.Space
-import scientifik.kmath.operations.SpaceElement
-import scientifik.kmath.structures.Buffer
-import scientifik.kmath.structures.asSequence
-import kotlin.jvm.JvmName
-
-typealias Point<T> = Buffer<T>
-
-
-fun <T : Any, S : Space<T>> BufferVectorSpace<T, S>.produceElement(initializer: (Int) -> T): Vector<T, S> =
-    BufferVector(this, produce(initializer))
-
-@JvmName("produceRealElement")
-fun BufferVectorSpace<Double, RealField>.produceElement(initializer: (Int) -> Double): Vector<Double, RealField> =
-    BufferVector(this, produce(initializer))
-
-/**
- * A point coupled to the linear space
- */
-@Deprecated("Use VectorContext instead")
-interface Vector<T : Any, S : Space<T>> : SpaceElement<Point<T>, Vector<T, S>, VectorSpace<T, S>>, Point<T> {
-    override val size: Int get() = context.size
-
-    override operator fun plus(b: Point<T>): Vector<T, S> = context.add(this, b).wrap()
-    override operator fun minus(b: Point<T>): Vector<T, S> = context.add(this, context.multiply(b, -1.0)).wrap()
-    override operator fun times(k: Number): Vector<T, S> = context.multiply(this, k.toDouble()).wrap()
-    override operator fun div(k: Number): Vector<T, S> = context.multiply(this, 1.0 / k.toDouble()).wrap()
-
-    companion object {
-        /**
-         * Create vector with custom field
-         */
-        fun <T : Any, S : Space<T>> generic(size: Int, field: S, initializer: (Int) -> T): Vector<T, S> =
-            VectorSpace.buffered(size, field).produceElement(initializer)
-
-        fun real(size: Int, initializer: (Int) -> Double): Vector<Double, RealField> =
-            VectorSpace.real(size).produceElement(initializer)
-
-        fun ofReal(vararg elements: Double): Vector<Double, RealField> =
-            VectorSpace.real(elements.size).produceElement { elements[it] }
-
-    }
-}
-
-@Deprecated("Use VectorContext instead")
-data class BufferVector<T : Any, S : Space<T>>(override val context: VectorSpace<T, S>, val buffer: Buffer<T>) :
-    Vector<T, S> {
-
-    init {
-        if (context.size != buffer.size) {
-            error("Array dimension mismatch")
-        }
-    }
-
-    override fun get(index: Int): T {
-        return buffer[index]
-    }
-
-    override fun unwrap(): Point<T> = this
-
-    override fun Point<T>.wrap(): Vector<T, S> = BufferVector(context, this)
-
-    override fun iterator(): Iterator<T> = (0 until size).map { buffer[it] }.iterator()
-
-    override fun toString(): String =
-        this.asSequence().joinToString(prefix = "[", postfix = "]", separator = ", ") { it.toString() }
-}
-

kmath-core/src/commonTest/kotlin/scientifik/kmath/linear/MatrixTest.kt

@@ -8,15 +8,15 @@ class MatrixTest {
 
     @Test
     fun testSum() {
-        val vector1 = Vector.real(5) { it.toDouble() }
+        val vector1 = RealVector(5) { it.toDouble() }
-        val vector2 = Vector.real(5) { 5 - it.toDouble() }
+        val vector2 = RealVector(5) { 5 - it.toDouble() }
         val sum = vector1 + vector2
         assertEquals(5.0, sum[2])
     }
 
     @Test
     fun testVectorToMatrix() {
-        val vector = Vector.real(5) { it.toDouble() }
+        val vector = RealVector(5) { it.toDouble() }
         val matrix = vector.asMatrix()
         assertEquals(4.0, matrix[4, 0])
     }
@@ -31,8 +31,8 @@ class MatrixTest {
 
     @Test
     fun testDot() {
-        val vector1 = Vector.real(5) { it.toDouble() }
+        val vector1 = RealVector(5) { it.toDouble() }
-        val vector2 = Vector.real(5) { 5 - it.toDouble() }
+        val vector2 = RealVector(5) { 5 - it.toDouble() }
 
         val matrix1 = vector1.asMatrix()
         val matrix2 = vector2.asMatrix().transpose()

kmath-coroutines/build.gradle.kts

@@ -1,26 +1,26 @@
 plugins {
-    `npm-multiplatform`
+    id("scientifik.mpp")
-    id("kotlinx-atomicfu") version Versions.atomicfuVersion
+    id("kotlinx-atomicfu")
 }
 
 kotlin.sourceSets {
     commonMain {
         dependencies {
             api(project(":kmath-core"))
-            api("org.jetbrains.kotlinx:kotlinx-coroutines-core-common:${Versions.coroutinesVersion}")
+            api("org.jetbrains.kotlinx:kotlinx-coroutines-core-common:${Scientifik.coroutinesVersion}")
-            compileOnly("org.jetbrains.kotlinx:atomicfu-common:${Versions.atomicfuVersion}")
+            compileOnly("org.jetbrains.kotlinx:atomicfu-common:${Scientifik.atomicfuVersion}")
         }
     }
     jvmMain {
         dependencies {
-            api("org.jetbrains.kotlinx:kotlinx-coroutines-core:${Versions.coroutinesVersion}")
+            api("org.jetbrains.kotlinx:kotlinx-coroutines-core:${Scientifik.coroutinesVersion}")
-            compileOnly("org.jetbrains.kotlinx:atomicfu:${Versions.atomicfuVersion}")
+            compileOnly("org.jetbrains.kotlinx:atomicfu:${Scientifik.atomicfuVersion}")
         }
     }
     jsMain {
         dependencies {
-            api("org.jetbrains.kotlinx:kotlinx-coroutines-core-js:${Versions.coroutinesVersion}")
+            api("org.jetbrains.kotlinx:kotlinx-coroutines-core-js:${Scientifik.coroutinesVersion}")
-            compileOnly("org.jetbrains.kotlinx:atomicfu-js:${Versions.atomicfuVersion}")
+            compileOnly("org.jetbrains.kotlinx:atomicfu-js:${Scientifik.atomicfuVersion}")
         }
     }
 }

kmath-coroutines/src/commonMain/kotlin/scientifik/kmath/chains/Chain.kt

@@ -20,6 +20,8 @@ import kotlinx.atomicfu.atomic
 import kotlinx.atomicfu.updateAndGet
 import kotlinx.coroutines.FlowPreview
 import kotlinx.coroutines.flow.Flow
+import kotlinx.coroutines.sync.Mutex
+import kotlinx.coroutines.sync.withLock
 
 
 /**
@@ -64,16 +66,22 @@ class SimpleChain<out R>(private val gen: suspend () -> R) : Chain<R> {
  */
 class MarkovChain<out R : Any>(private val seed: suspend () -> R, private val gen: suspend (R) -> R) : Chain<R> {
 
-    constructor(seedValue: R, gen: suspend (R) -> R) : this({ seedValue }, gen)
+    //constructor(seedValue: R, gen: suspend (R) -> R) : this({ seedValue }, gen)
 
-    private val value = atomic<R?>(null)
+    private val mutex = Mutex()
+
+    private var value: R? = null
 
     override suspend fun next(): R {
-        return value.updateAndGet { prev -> gen(prev ?: seed()) }!!
+        mutex.withLock {
+            val newValue = gen(value ?: seed())
+            value = newValue
+            return newValue
+        }
     }
 
     override fun fork(): Chain<R> {
-        return MarkovChain(seed = { value.value ?: seed() }, gen = gen)
+        return MarkovChain(seed = { value ?: seed() }, gen = gen)
     }
 }
 
@@ -89,17 +97,22 @@ class StatefulChain<S, out R>(
     private val gen: suspend S.(R) -> R
 ) : Chain<R> {
 
-    constructor(state: S, seedValue: R, forkState: ((S) -> S), gen: suspend S.(R) -> R) : this(
+//    constructor(state: S, seedValue: R, forkState: ((S) -> S), gen: suspend S.(R) -> R) : this(
-        state,
+//        state,
-        { seedValue },
+//        { seedValue },
-        forkState,
+//        forkState,
-        gen
+//        gen
-    )
+//    )
+    private val mutex = Mutex()
 
-    private val atomicValue = atomic<R?>(null)
+    private var value: R? = null
 
     override suspend fun next(): R {
-        return atomicValue.updateAndGet { prev -> state.gen(prev ?: state.seed()) }!!
+        mutex.withLock {
+            val newValue = state.gen(value ?: state.seed())
+            value = newValue
+            return newValue
+        }
     }
 
     override fun fork(): Chain<R> {

kmath-histograms/build.gradle.kts

@@ -1,5 +1,5 @@
 plugins {
-    `npm-multiplatform`
+    id("scientifik.mpp")
 }
 
 kotlin.sourceSets.commonMain {

kmath-histograms/src/commonMain/kotlin/scientifik/kmath/histogram/RealHistogram.kt

@@ -1,7 +1,7 @@
 package scientifik.kmath.histogram
 
 import scientifik.kmath.linear.Point
-import scientifik.kmath.linear.toVector
+import scientifik.kmath.linear.asVector
 import scientifik.kmath.operations.SpaceOperations
 import scientifik.kmath.structures.*
 import kotlin.math.floor
@@ -132,8 +132,8 @@ class RealHistogram(
          */
         fun fromRanges(vararg ranges: ClosedFloatingPointRange<Double>): RealHistogram {
             return RealHistogram(
-                ranges.map { it.start }.toVector(),
+                ranges.map { it.start }.asVector(),
-                ranges.map { it.endInclusive }.toVector()
+                ranges.map { it.endInclusive }.asVector()
             )
         }
 

kmath-histograms/src/commonTest/kotlin/scietifik/kmath/histogram/MultivariateHistogramTest.kt

@@ -3,7 +3,7 @@ package scietifik.kmath.histogram
 import scientifik.kmath.histogram.RealHistogram
 import scientifik.kmath.histogram.fill
 import scientifik.kmath.histogram.put
-import scientifik.kmath.linear.Vector
+import scientifik.kmath.linear.RealVector
 import kotlin.random.Random
 import kotlin.test.Test
 import kotlin.test.assertEquals
@@ -19,9 +19,9 @@ class MultivariateHistogramTest {
         )
         histogram.put(0.55, 0.55)
         val bin = histogram.find { it.value.toInt() > 0 }!!
-        assertTrue { bin.contains(Vector.ofReal(0.55, 0.55)) }
+        assertTrue { bin.contains(RealVector(0.55, 0.55)) }
-        assertTrue { bin.contains(Vector.ofReal(0.6, 0.5)) }
+        assertTrue { bin.contains(RealVector(0.6, 0.5)) }
-        assertFalse { bin.contains(Vector.ofReal(-0.55, 0.55)) }
+        assertFalse { bin.contains(RealVector(-0.55, 0.55)) }
     }
 
     @Test
@@ -39,7 +39,7 @@ class MultivariateHistogramTest {
 
         histogram.fill {
             repeat(n) {
-                yield(Vector.ofReal(nextDouble(), nextDouble(), nextDouble()))
+                yield(RealVector(nextDouble(), nextDouble(), nextDouble()))
             }
         }
         assertEquals(n, histogram.sumBy { it.value.toInt() })

kmath-histograms/src/jvmMain/kotlin/scientifik/kmath/histogram/UnivariateHistogram.kt

@@ -1,7 +1,7 @@
 package scientifik.kmath.histogram
 
 import scientifik.kmath.linear.RealVector
-import scientifik.kmath.linear.toVector
+import scientifik.kmath.linear.asVector
 import scientifik.kmath.structures.Buffer
 import java.util.*
 import kotlin.math.floor
@@ -12,7 +12,7 @@ class UnivariateBin(val position: Double, val size: Double, val counter: LongCou
     //TODO add weighting
     override val value: Number get() = counter.sum()
 
-    override val center: RealVector get() = doubleArrayOf(position).toVector()
+    override val center: RealVector get() = doubleArrayOf(position).asVector()
 
     operator fun contains(value: Double): Boolean = value in (position - size / 2)..(position + size / 2)
 

kmath-koma/build.gradle.kts

@@ -1,5 +1,5 @@
 plugins {
-    `npm-multiplatform`
+    id("scientifik.mpp")
 }
 
 repositories {

kmath-memory/build.gradle.kts

@@ -1,3 +1,3 @@
 plugins {
-    `npm-multiplatform`
+    id("scientifik.mpp")
 }

kmath-prob/build.gradle.kts

@@ -1,25 +1,25 @@
 plugins {
-    `npm-multiplatform`
+    id("scientifik.mpp")
-    id("kotlinx-atomicfu") version Versions.atomicfuVersion
+    id("kotlinx-atomicfu")
 }
 
 kotlin.sourceSets {
     commonMain {
         dependencies {
             api(project(":kmath-coroutines"))
-            compileOnly("org.jetbrains.kotlinx:atomicfu-common:${Versions.atomicfuVersion}")
+            compileOnly("org.jetbrains.kotlinx:atomicfu-common:${Scientifik.atomicfuVersion}")
         }
     }
     jvmMain {
         dependencies {
             // https://mvnrepository.com/artifact/org.apache.commons/commons-rng-simple
             //api("org.apache.commons:commons-rng-sampling:1.2")
-            compileOnly("org.jetbrains.kotlinx:atomicfu:${Versions.atomicfuVersion}")
+            compileOnly("org.jetbrains.kotlinx:atomicfu:${Scientifik.atomicfuVersion}")
         }
     }
     jsMain {
         dependencies {
-            compileOnly("org.jetbrains.kotlinx:atomicfu-js:${Versions.atomicfuVersion}")
+            compileOnly("org.jetbrains.kotlinx:atomicfu-js:${Scientifik.atomicfuVersion}")
         }
     }
 

settings.gradle.kts

@@ -1,9 +1,11 @@
 pluginManagement {
     repositories {
+        mavenLocal()
         jcenter()
         gradlePluginPortal()
         maven("https://dl.bintray.com/kotlin/kotlin-eap")
-        maven("https://dl.bintray.com/orangy/maven")
+        maven("https://dl.bintray.com/mipt-npm/scientifik")
+        maven("https://dl.bintray.com/kotlin/kotlinx")
     }
     resolutionStrategy {
         eachPlugin {
@@ -11,7 +13,8 @@ pluginManagement {
                 "kotlinx-atomicfu" -> useModule("org.jetbrains.kotlinx:atomicfu-gradle-plugin:${requested.version}")
                 "kotlin-multiplatform" -> useModule("org.jetbrains.kotlin:kotlin-gradle-plugin:${requested.version}")
                 "kotlin2js" -> useModule("org.jetbrains.kotlin:kotlin-gradle-plugin:${requested.version}")
-                //"org.jetbrains.kotlin.frontend" -> useModule("org.jetbrains.kotlin:kotlin-frontend-plugin:0.0.45")
+                "org.jetbrains.kotlin.frontend" -> useModule("org.jetbrains.kotlin:kotlin-frontend-plugin:0.0.45")
+                "scientifik.mpp", "scientifik.publish" -> useModule("scientifik:gradle-tools:${requested.version}")
             }
         }
     }