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Remove buildSrc

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This commit is contained in:
Alexander Nozik 2024-08-21 11:56:05 +03:00
parent 1619a49017
commit 6c1a5e62bf
13 changed files with 179 additions and 255 deletions
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154
benchmarks/build.gradle.kts
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@ -1,11 +1,18 @@
@file:Suppress("UNUSED_VARIABLE")
import space.kscience.kmath.benchmarks.addBenchmarkProperties
import com.fasterxml.jackson.module.kotlin.jacksonObjectMapper
import com.fasterxml.jackson.module.kotlin.readValue
import kotlinx.benchmark.gradle.BenchmarksExtension
import java.time.LocalDateTime
import java.time.ZoneId
import java.time.format.DateTimeFormatter
import java.time.format.DateTimeFormatterBuilder
import java.time.format.SignStyle
import java.time.temporal.ChronoField.*
import java.util.*
plugins {
kotlin("multiplatform")
alias(spclibs.plugins.kotlin.plugin.allopen)
id("org.jetbrains.kotlinx.benchmark")
alias(spclibs.plugins.kotlinx.benchmark)
}
allOpen.annotation("org.openjdk.jmh.annotations.State")
@ -158,8 +165,141 @@ kotlin {
}
}
readme {
maturity = space.kscience.gradle.Maturity.EXPERIMENTAL
private data class JmhReport(
val jmhVersion: String,
val benchmark: String,
val mode: String,
val threads: Int,
val forks: Int,
val jvm: String,
val jvmArgs: List<String>,
val jdkVersion: String,
val vmName: String,
val vmVersion: String,
val warmupIterations: Int,
val warmupTime: String,
val warmupBatchSize: Int,
val measurementIterations: Int,
val measurementTime: String,
val measurementBatchSize: Int,
val params: Map<String, String> = emptyMap(),
val primaryMetric: PrimaryMetric,
val secondaryMetrics: Map<String, SecondaryMetric>,
) {
interface Metric {
val score: Double
val scoreError: Double
val scoreConfidence: List<Double>
val scorePercentiles: Map<Double, Double>
val scoreUnit: String
}
data class PrimaryMetric(
override val score: Double,
override val scoreError: Double,
override val scoreConfidence: List<Double>,
override val scorePercentiles: Map<Double, Double>,
override val scoreUnit: String,
val rawDataHistogram: List<List<List<List<Double>>>>? = null,
val rawData: List<List<Double>>? = null,
) : Metric
data class SecondaryMetric(
override val score: Double,
override val scoreError: Double,
override val scoreConfidence: List<Double>,
override val scorePercentiles: Map<Double, Double>,
override val scoreUnit: String,
val rawData: List<List<Double>>,
) : Metric
}
addBenchmarkProperties()
readme {
maturity = space.kscience.gradle.Maturity.EXPERIMENTAL
val jsonMapper = jacksonObjectMapper()
val ISO_DATE_TIME: DateTimeFormatter = DateTimeFormatterBuilder().run {
parseCaseInsensitive()
appendValue(YEAR, 4, 10, SignStyle.EXCEEDS_PAD)
appendLiteral('-')
appendValue(MONTH_OF_YEAR, 2)
appendLiteral('-')
appendValue(DAY_OF_MONTH, 2)
appendLiteral('T')
appendValue(HOUR_OF_DAY, 2)
appendLiteral('.')
appendValue(MINUTE_OF_HOUR, 2)
optionalStart()
appendLiteral('.')
appendValue(SECOND_OF_MINUTE, 2)
optionalStart()
appendFraction(NANO_OF_SECOND, 0, 9, true)
optionalStart()
appendOffsetId()
optionalStart()
appendLiteral('[')
parseCaseSensitive()
appendZoneRegionId()
appendLiteral(']')
toFormatter()
}
fun noun(number: Number, singular: String, plural: String) = if (number.toLong() == 1L) singular else plural
extensions.findByType(BenchmarksExtension::class.java)?.configurations?.forEach { cfg ->
property("benchmark${cfg.name.replaceFirstChar { if (it.isLowerCase()) it.titlecase(Locale.getDefault()) else it.toString() }}") {
val launches = layout.buildDirectory.dir("reports/benchmarks/${cfg.name}").get()
val resDirectory = launches.files().maxByOrNull {
LocalDateTime.parse(it.name, ISO_DATE_TIME).atZone(ZoneId.systemDefault()).toInstant()
}
if (resDirectory == null || !(resDirectory.resolve("jvm.json")).exists()) {
"> **Can't find appropriate benchmark data. Try generating readme files after running benchmarks**."
} else {
val reports: List<JmhReport> =
jsonMapper.readValue<List<JmhReport>>(resDirectory.resolve("jvm.json"))
buildString {
appendLine("<details>")
appendLine("<summary>")
appendLine("Report for benchmark configuration <code>${cfg.name}</code>")
appendLine("</summary>")
appendLine()
val first = reports.first()
appendLine("* Run on ${first.vmName} (build ${first.vmVersion}) with Java process:")
appendLine()
appendLine("```")
appendLine(
"${first.jvm} ${
first.jvmArgs.joinToString(" ")
}"
)
appendLine("```")
appendLine(
"* JMH ${first.jmhVersion} was used in `${first.mode}` mode with ${first.warmupIterations} warmup ${
noun(first.warmupIterations, "iteration", "iterations")
} by ${first.warmupTime} and ${first.measurementIterations} measurement ${
noun(first.measurementIterations, "iteration", "iterations")
} by ${first.measurementTime}."
)
appendLine()
appendLine("| Benchmark | Score |")
appendLine("|:---------:|:-----:|")
reports.forEach { report ->
appendLine("|`${report.benchmark}`|${report.primaryMetric.score} &plusmn; ${report.primaryMetric.scoreError} ${report.primaryMetric.scoreUnit}|")
}
appendLine("</details>")
}
}
}
}
}

2
build.gradle.kts
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@ -2,7 +2,7 @@ import space.kscience.gradle.useApache2Licence
import space.kscience.gradle.useSPCTeam
plugins {
id("space.kscience.gradle.project")
alias(spclibs.plugins.kscience.project)
alias(spclibs.plugins.kotlinx.kover)
}

33
buildSrc/build.gradle.kts
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@ -1,33 +0,0 @@
plugins {
kotlin("jvm") version "1.9.23"
`kotlin-dsl`
`version-catalog`
}
repositories {
mavenLocal()
maven("https://repo.kotlin.link")
mavenCentral()
gradlePluginPortal()
}
val toolsVersion = spclibs.versions.tools.get()
val kotlinVersion = spclibs.versions.kotlin.asProvider().get()
val benchmarksVersion = spclibs.versions.kotlinx.benchmark.get()
dependencies {
api("space.kscience:gradle-tools:$toolsVersion")
//plugins form benchmarks
api("org.jetbrains.kotlinx:kotlinx-benchmark-plugin:$benchmarksVersion")
//api("org.jetbrains.kotlin:kotlin-allopen:$kotlinVersion")
//to be used inside build-script only
//implementation(spclibs.kotlinx.serialization.json)
implementation("com.fasterxml.jackson.module:jackson-module-kotlin:2.14.+")
}
kotlin {
jvmToolchain(11)
compilerOptions {
optIn.add("kotlin.OptIn")
}
}

38
buildSrc/settings.gradle.kts
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@ -1,38 +0,0 @@
/*
* Copyright 2018-2021 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
enableFeaturePreview("TYPESAFE_PROJECT_ACCESSORS")
plugins {
id("org.gradle.toolchains.foojay-resolver-convention") version "0.8.0"
}
dependencyResolutionManagement {
val projectProperties = java.util.Properties()
file("../gradle.properties").inputStream().use {
projectProperties.load(it)
}
projectProperties.forEach { key, value ->
extra.set(key.toString(), value)
}
val toolsVersion: String = projectProperties["toolsVersion"].toString()
@Suppress("UnstableApiUsage")
repositories {
mavenLocal()
maven("https://repo.kotlin.link")
mavenCentral()
gradlePluginPortal()
}
versionCatalogs {
create("spclibs") {
from("space.kscience:version-catalog:$toolsVersion")
}
}
}

55
buildSrc/src/main/kotlin/space/kscience/kmath/benchmarks/JmhReport.kt
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@ -1,55 +0,0 @@
/*
* Copyright 2018-2024 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.benchmarks
data class JmhReport(
val jmhVersion: String,
val benchmark: String,
val mode: String,
val threads: Int,
val forks: Int,
val jvm: String,
val jvmArgs: List<String>,
val jdkVersion: String,
val vmName: String,
val vmVersion: String,
val warmupIterations: Int,
val warmupTime: String,
val warmupBatchSize: Int,
val measurementIterations: Int,
val measurementTime: String,
val measurementBatchSize: Int,
val params: Map<String, String> = emptyMap(),
val primaryMetric: PrimaryMetric,
val secondaryMetrics: Map<String, SecondaryMetric>,
) {
interface Metric {
val score: Double
val scoreError: Double
val scoreConfidence: List<Double>
val scorePercentiles: Map<Double, Double>
val scoreUnit: String
}
data class PrimaryMetric(
override val score: Double,
override val scoreError: Double,
override val scoreConfidence: List<Double>,
override val scorePercentiles: Map<Double, Double>,
override val scoreUnit: String,
val rawDataHistogram: List<List<List<List<Double>>>>? = null,
val rawData: List<List<Double>>? = null,
) : Metric
data class SecondaryMetric(
override val score: Double,
override val scoreError: Double,
override val scoreConfidence: List<Double>,
override val scorePercentiles: Map<Double, Double>,
override val scoreUnit: String,
val rawData: List<List<Double>>,
) : Metric
}

110
buildSrc/src/main/kotlin/space/kscience/kmath/benchmarks/addBenchmarkProperties.kt
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@ -1,110 +0,0 @@
/*
* Copyright 2018-2024 KMath contributors.
* Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
*/
package space.kscience.kmath.benchmarks
import com.fasterxml.jackson.module.kotlin.jacksonObjectMapper
import com.fasterxml.jackson.module.kotlin.readValue
import kotlinx.benchmark.gradle.BenchmarksExtension
import org.gradle.api.Project
import space.kscience.gradle.KScienceReadmeExtension
import java.time.LocalDateTime
import java.time.ZoneId
import java.time.format.DateTimeFormatter
import java.time.format.DateTimeFormatterBuilder
import java.time.format.SignStyle
import java.time.temporal.ChronoField.*
import java.util.*
private val ISO_DATE_TIME: DateTimeFormatter = DateTimeFormatterBuilder().run {
parseCaseInsensitive()
appendValue(YEAR, 4, 10, SignStyle.EXCEEDS_PAD)
appendLiteral('-')
appendValue(MONTH_OF_YEAR, 2)
appendLiteral('-')
appendValue(DAY_OF_MONTH, 2)
appendLiteral('T')
appendValue(HOUR_OF_DAY, 2)
appendLiteral('.')
appendValue(MINUTE_OF_HOUR, 2)
optionalStart()
appendLiteral('.')
appendValue(SECOND_OF_MINUTE, 2)
optionalStart()
appendFraction(NANO_OF_SECOND, 0, 9, true)
optionalStart()
appendOffsetId()
optionalStart()
appendLiteral('[')
parseCaseSensitive()
appendZoneRegionId()
appendLiteral(']')
toFormatter()
}
private fun noun(number: Number, singular: String, plural: String) = if (number.toLong() == 1L) singular else plural
private val jsonMapper = jacksonObjectMapper()
fun Project.addBenchmarkProperties() {
val benchmarksProject = this
rootProject.subprojects.forEach { p ->
p.extensions.findByType(KScienceReadmeExtension::class.java)?.run {
benchmarksProject.extensions.findByType(BenchmarksExtension::class.java)?.configurations?.forEach { cfg ->
property("benchmark${cfg.name.replaceFirstChar { if (it.isLowerCase()) it.titlecase(Locale.getDefault()) else it.toString() }}") {
val launches = benchmarksProject.layout.buildDirectory.dir("reports/benchmarks/${cfg.name}").get()
val resDirectory = launches.files().maxByOrNull {
LocalDateTime.parse(it.name, ISO_DATE_TIME).atZone(ZoneId.systemDefault()).toInstant()
}
if (resDirectory == null || !(resDirectory.resolve("jvm.json")).exists()) {
"> **Can't find appropriate benchmark data. Try generating readme files after running benchmarks**."
} else {
val reports: List<JmhReport> =
jsonMapper.readValue<List<JmhReport>>(resDirectory.resolve("jvm.json"))
buildString {
appendLine("<details>")
appendLine("<summary>")
appendLine("Report for benchmark configuration <code>${cfg.name}</code>")
appendLine("</summary>")
appendLine()
val first = reports.first()
appendLine("* Run on ${first.vmName} (build ${first.vmVersion}) with Java process:")
appendLine()
appendLine("```")
appendLine(
"${first.jvm} ${
first.jvmArgs.joinToString(" ")
}"
)
appendLine("```")
appendLine(
"* JMH ${first.jmhVersion} was used in `${first.mode}` mode with ${first.warmupIterations} warmup ${
noun(first.warmupIterations, "iteration", "iterations")
} by ${first.warmupTime} and ${first.measurementIterations} measurement ${
noun(first.measurementIterations, "iteration", "iterations")
} by ${first.measurementTime}."
)
appendLine()
appendLine("| Benchmark | Score |")
appendLine("|:---------:|:-----:|")
reports.forEach { report ->
appendLine("|`${report.benchmark}`|${report.primaryMetric.score} &plusmn; ${report.primaryMetric.scoreError} ${report.primaryMetric.scoreUnit}|")
}
appendLine("</details>")
}
}
}
}
}
}
}

4
gradle.properties
View File

@ -10,6 +10,4 @@ org.gradle.jvmargs=-Xmx4096m
org.gradle.parallel=true
org.gradle.workers.max=4
toolsVersion=0.15.4-kotlin-2.0.0
#kotlin.experimental.tryK2=true
#kscience.wasm.disabled=true
toolsVersion=0.15.4-kotlin-2.0.0

4
gradle/libs.versions.toml
View File

@ -9,4 +9,6 @@ commons-rng-simple = { module = "org.apache.commons:commons-rng-simple", version
commons-rng-sampling = { module = "org.apache.commons:commons-rng-sampling", version.ref = "commons-rng" }
multik-core = { module = "org.jetbrains.kotlinx:multik-core", version.ref = "multik" }
multik-default = { module = "org.jetbrains.kotlinx:multik-default", version.ref = "multik" }
multik-default = { module = "org.jetbrains.kotlinx:multik-default", version.ref = "multik" }
[plugins]

1
kmath-commons/src/jvmMain/kotlin/space/kscience/kmath/commons/linear/CMMatrix.kt
View File

@ -109,6 +109,7 @@ public object CMLinearSpace : LinearSpace<Double, Float64Field> {
override fun Double.times(v: Point<Float64>): CMVector =
v * this
@OptIn(UnstableKMathAPI::class)
override fun <V, A : StructureAttribute<V>> computeAttribute(structure: Structure2D<Float64>, attribute: A): V? {
val origin = structure.toCM().origin

2
kmath-ejml/src/jvmMain/kotlin/space/kscience/kmath/ejml/implementations.kt
View File

@ -21,6 +21,7 @@ import org.ejml.sparse.csc.factory.DecompositionFactory_DSCC
import org.ejml.sparse.csc.factory.DecompositionFactory_FSCC
import space.kscience.attributes.SafeType
import space.kscience.attributes.safeTypeOf
import space.kscience.kmath.UnstableKMathAPI
import space.kscience.kmath.complex.Complex
import space.kscience.kmath.linear.*
import space.kscience.kmath.linear.Matrix
@ -216,6 +217,7 @@ public object EjmlLinearSpaceDDRM : EjmlLinearSpace<Double, Float64Field, DMatri
override fun Double.times(v: Point<Float64>): EjmlDoubleVector<DMatrixRMaj> = v * this
@OptIn(UnstableKMathAPI::class)
override fun <V, A : StructureAttribute<V>> computeAttribute(structure: Structure2D<Float64>, attribute: A): V? {
val origin: DMatrixRMaj = structure.toEjml().origin

8
kmath-stat/src/commonTest/kotlin/space/kscience/kmath/samplers/TestMetropolisHastingsSampler.kt
View File

@ -24,7 +24,7 @@ class TestMetropolisHastingsSampler {
data class TestSetup(val mean: Double, val startPoint: Double, val sigma: Double = 0.5)
private val sample = 1e6.toInt()
private val sample = 1e5.toInt()
private val burnIn = sample / 5
@Test
@ -40,7 +40,7 @@ class TestMetropolisHastingsSampler {
.univariateNormal(it.startPoint, it.sigma, distribution::probability)
val sampledValues = sampler.sample(generator).discard(burnIn).nextBuffer(sample)
assertEquals(it.mean, Float64Field.mean(sampledValues), 1e-2)
assertEquals(it.mean, Float64Field.mean(sampledValues), 0.05)
}
}
@ -59,7 +59,7 @@ class TestMetropolisHastingsSampler {
}
val sampledValues = sampler.sample(generator).discard(burnIn).nextBuffer(sample)
assertEquals(1.0 / setup.mean, Float64Field.mean(sampledValues), 1e-2)
assertEquals(1.0 / setup.mean, Float64Field.mean(sampledValues), 0.1)
}
}
@ -82,7 +82,7 @@ class TestMetropolisHastingsSampler {
}
val sampledValues = sampler.sample(generator).discard(burnIn).nextBuffer(sample)
assertEquals(setup.mean * sqrt(PI / 2), Float64Field.mean(sampledValues), 1e-2)
assertEquals(setup.mean * sqrt(PI / 2), Float64Field.mean(sampledValues), 0.05)
}
}

2
kmath-stat/src/jvmMain/kotlin/space/kscience/kmath/stat/RandomSourceGenerator.kt
View File

@ -18,7 +18,7 @@ public class RandomSourceGenerator internal constructor(
public val source: RandomSource,
seed: Long?,
) : RandomGenerator {
internal val random: UniformRandomProvider = seed?.let { RandomSource.create(source, seed) }
internal val random: UniformRandomProvider = seed?.let { source.create(seed) }
?: RandomSource.create(source)
override fun nextBoolean(): Boolean = random.nextBoolean()

21
settings.gradle.kts
View File

@ -2,14 +2,31 @@ rootProject.name = "kmath"
enableFeaturePreview("TYPESAFE_PROJECT_ACCESSORS")
pluginManagement {
val toolsVersion: String by extra
repositories {
mavenLocal()
gradlePluginPortal()
mavenCentral()
maven("https://repo.kotlin.link")
}
plugins {
id("space.kscience.gradle.project") version toolsVersion
id("space.kscience.gradle.mpp") version toolsVersion
id("space.kscience.gradle.jvm") version toolsVersion
}
}
dependencyResolutionManagement {
val toolsVersion: String by extra
repositories {
mavenLocal()
maven("https://repo.kotlin.link")
mavenCentral()
gradlePluginPortal()
mavenCentral()
maven("https://repo.kotlin.link")
}
versionCatalogs {