Rename Tensor::get to Tensor::getTensor to avoid name clash.
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a9821772db
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3729faf49b
@ -58,7 +58,7 @@ fun main(): Unit = Double.tensorAlgebra.withBroadcast { // work in context with
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// and find out eigenvector of it
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val (_, evecs) = covMatrix.symEig()
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val v = evecs[0]
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val v = evecs.getTensor(0)
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println("Eigenvector:\n$v")
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// reduce dimension of dataset
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@ -68,7 +68,7 @@ fun main(): Unit = Double.tensorAlgebra.withBroadcast { // work in context with
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// we can restore original data from reduced data;
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// for example, find 7th element of dataset.
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val n = 7
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val restored = (datasetReduced[n] dot v.view(intArrayOf(1, 2))) * std + mean
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println("Original value:\n${dataset[n]}")
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val restored = (datasetReduced.getTensor(n) dot v.view(intArrayOf(1, 2))) * std + mean
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println("Original value:\n${dataset.getTensor(n)}")
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println("Restored value:\n$restored")
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}
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@ -66,7 +66,7 @@ fun main() = Double.tensorAlgebra.withBroadcast {// work in context with linear
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val n = l.shape[0]
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val x = zeros(intArrayOf(n))
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for (i in 0 until n) {
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x[intArrayOf(i)] = (b[intArrayOf(i)] - l[i].dot(x).value()) / l[intArrayOf(i, i)]
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x[intArrayOf(i)] = (b[intArrayOf(i)] - l.getTensor(i).dot(x).value()) / l[intArrayOf(i, i)]
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}
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return x
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}
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@ -197,7 +197,7 @@ fun main() = BroadcastDoubleTensorAlgebra {
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val y = fromArray(
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intArrayOf(sampleSize, 1),
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DoubleArray(sampleSize) { i ->
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if (x[i].sum() > 0.0) {
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if (x.getTensor(i).sum() > 0.0) {
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1.0
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} else {
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0.0
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@ -7,6 +7,7 @@ package space.kscience.kmath.misc
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import space.kscience.kmath.operations.Ring
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import space.kscience.kmath.operations.invoke
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import space.kscience.kmath.structures.Buffer
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import kotlin.jvm.JvmName
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/**
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@ -42,8 +43,8 @@ public inline fun <T, R> List<T>.cumulative(initial: R, crossinline operation: (
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/**
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* Cumulative sum with custom space
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*/
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public fun <T> Iterable<T>.cumulativeSum(group: Ring<T>): Iterable<T> =
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group { cumulative(zero) { element: T, sum: T -> sum + element } }
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public fun <T> Iterable<T>.cumulativeSum(ring: Ring<T>): Iterable<T> =
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ring { cumulative(zero) { element: T, sum: T -> sum + element } }
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@JvmName("cumulativeSumOfDouble")
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public fun Iterable<Double>.cumulativeSum(): Iterable<Double> = cumulative(0.0) { element, sum -> sum + element }
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@ -54,8 +55,8 @@ public fun Iterable<Int>.cumulativeSum(): Iterable<Int> = cumulative(0) { elemen
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@JvmName("cumulativeSumOfLong")
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public fun Iterable<Long>.cumulativeSum(): Iterable<Long> = cumulative(0L) { element, sum -> sum + element }
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public fun <T> Sequence<T>.cumulativeSum(group: Ring<T>): Sequence<T> =
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group { cumulative(zero) { element: T, sum: T -> sum + element } }
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public fun <T> Sequence<T>.cumulativeSum(ring: Ring<T>): Sequence<T> =
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ring { cumulative(zero) { element: T, sum: T -> sum + element } }
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@JvmName("cumulativeSumOfDouble")
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public fun Sequence<Double>.cumulativeSum(): Sequence<Double> = cumulative(0.0) { element, sum -> sum + element }
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@ -77,3 +78,12 @@ public fun List<Int>.cumulativeSum(): List<Int> = cumulative(0) { element, sum -
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@JvmName("cumulativeSumOfLong")
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public fun List<Long>.cumulativeSum(): List<Long> = cumulative(0L) { element, sum -> sum + element }
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public fun <T> Buffer<T>.cumulativeSum(ring: Ring<T>): Buffer<T> = with(ring) {
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var accumulator: T = zero
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return bufferFactory(size) {
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accumulator += get(it)
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accumulator
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}
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}
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@ -185,7 +185,7 @@ public abstract class MultikTensorAlgebra<T, A : Ring<T>>(
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override fun StructureND<T>.unaryMinus(): MultikTensor<T> =
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asMultik().array.unaryMinus().wrap()
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override fun Tensor<T>.get(i: Int): MultikTensor<T> = asMultik().array.mutableView(i).wrap()
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override fun Tensor<T>.getTensor(i: Int): MultikTensor<T> = asMultik().array.mutableView(i).wrap()
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override fun Tensor<T>.transpose(i: Int, j: Int): MultikTensor<T> = asMultik().array.transpose(i, j).wrap()
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@ -246,6 +246,12 @@ public abstract class MultikTensorAlgebra<T, A : Ring<T>>(
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return multikMath.minDN(asMultik().array, dim).wrap()
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}
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override fun StructureND<T>.argMin(dim: Int, keepDim: Boolean): Tensor<Int> {
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if (keepDim) TODO("keepDim not implemented")
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val res = multikMath.argMinDN(asMultik().array, dim)
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return with(MultikIntAlgebra(multikEngine)) { res.wrap() }
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}
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override fun StructureND<T>.max(): T? = asMultik().array.max()
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override fun StructureND<T>.max(dim: Int, keepDim: Boolean): Tensor<T> {
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@ -95,7 +95,7 @@ public sealed interface Nd4jTensorAlgebra<T : Number, A : Field<T>> : AnalyticTe
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}
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override fun StructureND<T>.unaryMinus(): Nd4jArrayStructure<T> = ndArray.neg().wrap()
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override fun Tensor<T>.get(i: Int): Nd4jArrayStructure<T> = ndArray.slice(i.toLong()).wrap()
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override fun Tensor<T>.getTensor(i: Int): Nd4jArrayStructure<T> = ndArray.slice(i.toLong()).wrap()
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override fun Tensor<T>.transpose(i: Int, j: Int): Nd4jArrayStructure<T> = ndArray.swapAxes(i, j).wrap()
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override fun StructureND<T>.dot(other: StructureND<T>): Nd4jArrayStructure<T> = ndArray.mmul(other.ndArray).wrap()
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@ -111,6 +111,9 @@ public sealed interface Nd4jTensorAlgebra<T : Number, A : Field<T>> : AnalyticTe
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override fun Tensor<T>.view(shape: IntArray): Nd4jArrayStructure<T> = ndArray.reshape(shape).wrap()
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override fun Tensor<T>.viewAs(other: StructureND<T>): Nd4jArrayStructure<T> = view(other.shape)
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override fun StructureND<T>.argMin(dim: Int, keepDim: Boolean): Tensor<Int> =
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ndBase.get().argmin(ndArray, keepDim, dim).asIntStructure()
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override fun StructureND<T>.argMax(dim: Int, keepDim: Boolean): Tensor<Int> =
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ndBase.get().argmax(ndArray, keepDim, dim).asIntStructure()
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@ -184,7 +184,7 @@ public abstract class TensorFlowAlgebra<T, TT : TNumber, A : Ring<T>> internal c
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override fun StructureND<T>.unaryMinus(): TensorFlowOutput<T, TT> = operate(ops.math::neg)
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override fun Tensor<T>.get(i: Int): Tensor<T> = operate {
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override fun Tensor<T>.getTensor(i: Int): Tensor<T> = operate {
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StridedSliceHelper.stridedSlice(ops.scope(), it, Indices.at(i.toLong()))
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}
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@ -238,6 +238,11 @@ public abstract class TensorFlowAlgebra<T, TT : TNumber, A : Ring<T>> internal c
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ops.min(it, ops.constant(dim), Min.keepDims(keepDim))
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}
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override fun StructureND<T>.argMin(dim: Int, keepDim: Boolean): Tensor<Int> = IntTensorFlowOutput(
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graph,
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ops.math.argMin(asTensorFlow().output, ops.constant(dim), TInt32::class.java).output()
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).actualTensor
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override fun StructureND<T>.max(): T = operate {
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ops.max(it, ops.constant(intArrayOf()))
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}.value()
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@ -166,7 +166,11 @@ public interface TensorAlgebra<T, A : Ring<T>> : RingOpsND<T, A> {
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* @param i index of the extractable tensor
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* @return subtensor of the original tensor with index [i]
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*/
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public operator fun Tensor<T>.get(i: Int): Tensor<T>
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public fun Tensor<T>.getTensor(i: Int): Tensor<T>
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public fun Tensor<T>.getTensor(first: Int, second: Int): Tensor<T> {
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return getTensor(first).getTensor(second)
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}
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/**
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* Returns a tensor that is a transposed version of this tensor. The given dimensions [i] and [j] are swapped.
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@ -286,6 +290,19 @@ public interface TensorAlgebra<T, A : Ring<T>> : RingOpsND<T, A> {
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*/
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public fun StructureND<T>.min(dim: Int, keepDim: Boolean): Tensor<T>
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/**
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* Returns the index of minimum value of each row of the input tensor in the given dimension [dim].
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*
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* If [keepDim] is true, the output tensor is of the same size as
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* input except in the dimension [dim] where it is of size 1.
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* Otherwise, [dim] is squeezed, resulting in the output tensor having 1 fewer dimension.
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*
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* @param dim the dimension to reduce.
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* @param keepDim whether the output tensor has [dim] retained or not.
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* @return the index of maximum value of each row of the input tensor in the given dimension [dim].
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*/
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public fun StructureND<T>.argMin(dim: Int, keepDim: Boolean): Tensor<Int>
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/**
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* Returns the maximum value of all elements in the input tensor or null if there are no values
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*/
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@ -24,6 +24,7 @@ import kotlin.math.*
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/**
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* Implementation of basic operations over double tensors and basic algebra operations on them.
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*/
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@OptIn(PerformancePitfall::class)
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public open class DoubleTensorAlgebra :
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TensorPartialDivisionAlgebra<Double, DoubleField>,
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AnalyticTensorAlgebra<Double, DoubleField>,
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@ -120,7 +121,7 @@ public open class DoubleTensorAlgebra :
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TensorLinearStructure(shape).asSequence().map { DoubleField.initializer(it) }.toMutableList().toDoubleArray()
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)
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override operator fun Tensor<Double>.get(i: Int): DoubleTensor {
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override fun Tensor<Double>.getTensor(i: Int): DoubleTensor {
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val lastShape = asDoubleTensor().shape.drop(1).toIntArray()
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val newShape = if (lastShape.isNotEmpty()) lastShape else intArrayOf(1)
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val newStart = newShape.reduce(Int::times) * i + asDoubleTensor().bufferStart
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@ -204,7 +205,11 @@ public open class DoubleTensorAlgebra :
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* @return a copy of the `input` tensor with a copied buffer.
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*/
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public fun StructureND<Double>.copy(): DoubleTensor =
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DoubleTensor(asDoubleTensor().shape, asDoubleTensor().mutableBuffer.array().copyOf(), asDoubleTensor().bufferStart)
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DoubleTensor(
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asDoubleTensor().shape,
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asDoubleTensor().mutableBuffer.array().copyOf(),
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asDoubleTensor().bufferStart
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)
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override fun Double.plus(arg: StructureND<Double>): DoubleTensor {
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val resBuffer = DoubleArray(arg.asDoubleTensor().numElements) { i ->
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@ -413,7 +418,10 @@ public open class DoubleTensorAlgebra :
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@UnstableKMathAPI
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public infix fun StructureND<Double>.matmul(other: StructureND<Double>): DoubleTensor {
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if (asDoubleTensor().shape.size == 1 && other.shape.size == 1) {
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return DoubleTensor(intArrayOf(1), doubleArrayOf(asDoubleTensor().times(other).asDoubleTensor().mutableBuffer.array().sum()))
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return DoubleTensor(
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intArrayOf(1),
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doubleArrayOf(asDoubleTensor().times(other).asDoubleTensor().mutableBuffer.array().sum())
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)
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}
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var newThis = asDoubleTensor().copy()
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@ -592,7 +600,8 @@ public open class DoubleTensorAlgebra :
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check(tensors.all { it.shape contentEquals shape }) { "Tensors must have same shapes" }
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val resShape = intArrayOf(tensors.size) + shape
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val resBuffer = tensors.flatMap {
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it.asDoubleTensor().mutableBuffer.array().drop(it.asDoubleTensor().bufferStart).take(it.asDoubleTensor().numElements)
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it.asDoubleTensor().mutableBuffer.array().drop(it.asDoubleTensor().bufferStart)
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.take(it.asDoubleTensor().numElements)
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}.toDoubleArray()
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return DoubleTensor(resShape, resBuffer, 0)
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}
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@ -603,7 +612,7 @@ public open class DoubleTensorAlgebra :
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* @param indices the [IntArray] of 1-dimensional indices
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* @return tensor with rows corresponding to row by [indices]
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*/
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public fun Tensor<Double>.rowsByIndices(indices: IntArray): DoubleTensor = stack(indices.map { this[it] })
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public fun Tensor<Double>.rowsByIndices(indices: IntArray): DoubleTensor = stack(indices.map { getTensor(it) })
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private inline fun StructureND<Double>.fold(foldFunction: (DoubleArray) -> Double): Double =
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foldFunction(asDoubleTensor().copyArray())
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@ -645,6 +654,10 @@ public open class DoubleTensorAlgebra :
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override fun StructureND<Double>.min(dim: Int, keepDim: Boolean): DoubleTensor =
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foldDim(dim, keepDim) { x -> x.minOrNull()!! }.asDoubleTensor()
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override fun StructureND<Double>.argMin(dim: Int, keepDim: Boolean): Tensor<Int> = foldDim(dim, keepDim) { x ->
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x.withIndex().minByOrNull { it.value }?.index!!
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}.asIntTensor()
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override fun StructureND<Double>.max(): Double = this.fold { it.maxOrNull()!! }
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override fun StructureND<Double>.max(dim: Int, keepDim: Boolean): DoubleTensor =
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@ -118,7 +118,7 @@ public open class IntTensorAlgebra : TensorAlgebra<Int, IntRing> {
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TensorLinearStructure(shape).asSequence().map { IntRing.initializer(it) }.toMutableList().toIntArray()
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)
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override operator fun Tensor<Int>.get(i: Int): IntTensor {
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override fun Tensor<Int>.getTensor(i: Int): IntTensor {
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val lastShape = asIntTensor().shape.drop(1).toIntArray()
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val newShape = if (lastShape.isNotEmpty()) lastShape else intArrayOf(1)
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val newStart = newShape.reduce(Int::times) * i + asIntTensor().bufferStart
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@ -433,7 +433,7 @@ public open class IntTensorAlgebra : TensorAlgebra<Int, IntRing> {
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* @param indices the [IntArray] of 1-dimensional indices
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* @return tensor with rows corresponding to row by [indices]
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*/
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public fun Tensor<Int>.rowsByIndices(indices: IntArray): IntTensor = stack(indices.map { this[it] })
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public fun Tensor<Int>.rowsByIndices(indices: IntArray): IntTensor = stack(indices.map { getTensor(it) })
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private inline fun StructureND<Int>.fold(foldFunction: (IntArray) -> Int): Int =
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foldFunction(asIntTensor().copyArray())
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@ -475,6 +475,11 @@ public open class IntTensorAlgebra : TensorAlgebra<Int, IntRing> {
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override fun StructureND<Int>.min(dim: Int, keepDim: Boolean): IntTensor =
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foldDim(dim, keepDim) { x -> x.minOrNull()!! }.asIntTensor()
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override fun StructureND<Int>.argMin(dim: Int, keepDim: Boolean): IntTensor =
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foldDim(dim, keepDim) { x ->
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x.withIndex().minByOrNull { it.value }?.index!!
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}.asIntTensor()
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override fun StructureND<Int>.max(): Int = this.fold { it.maxOrNull()!! }
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override fun StructureND<Int>.max(dim: Int, keepDim: Boolean): IntTensor =
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@ -257,13 +257,13 @@ internal fun DoubleTensorAlgebra.qrHelper(
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val qT = q.transpose(0, 1)
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for (j in 0 until n) {
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val v = matrixT[j]
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val v = matrixT.getTensor(j)
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val vv = v.as1D()
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if (j > 0) {
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for (i in 0 until j) {
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r[i, j] = (qT[i] dot matrixT[j]).value()
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r[i, j] = (qT.getTensor(i) dot matrixT.getTensor(j)).value()
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for (k in 0 until n) {
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val qTi = qT[i].as1D()
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val qTi = qT.getTensor(i).as1D()
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vv[k] = vv[k] - r[i, j] * qTi[k]
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}
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}
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@ -313,7 +313,7 @@ internal fun DoubleTensorAlgebra.svdHelper(
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val outerProduct = DoubleArray(u.shape[0] * v.shape[0])
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for (i in 0 until u.shape[0]) {
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for (j in 0 until v.shape[0]) {
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outerProduct[i * v.shape[0] + j] = u[i].value() * v[j].value()
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outerProduct[i * v.shape[0] + j] = u.getTensor(i).value() * v.getTensor(j).value()
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}
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}
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a = a - singularValue.times(DoubleTensor(intArrayOf(u.shape[0], v.shape[0]), outerProduct))
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@ -36,17 +36,18 @@ internal class TestDoubleTensor {
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val tensor = fromArray(intArrayOf(2, 2), doubleArrayOf(3.5, 5.8, 58.4, 2.4))
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assertEquals(tensor[intArrayOf(0, 1)], 5.8)
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assertTrue(
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tensor.elements().map { it.second }.toList().toDoubleArray() contentEquals tensor.mutableBuffer.toDoubleArray()
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tensor.elements().map { it.second }.toList()
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.toDoubleArray() contentEquals tensor.mutableBuffer.toDoubleArray()
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)
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}
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@Test
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fun testGet() = DoubleTensorAlgebra {
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val tensor = fromArray(intArrayOf(1, 2, 2), doubleArrayOf(3.5, 5.8, 58.4, 2.4))
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val matrix = tensor[0].as2D()
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val matrix = tensor.getTensor(0).as2D()
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assertEquals(matrix[0, 1], 5.8)
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val vector = tensor[0][1].as1D()
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val vector = tensor.getTensor(0, 1).as1D()
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assertEquals(vector[0], 58.4)
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matrix[0, 1] = 77.89
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@ -57,8 +58,8 @@ internal class TestDoubleTensor {
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tensor.matrixSequence().forEach {
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val a = it.toTensor()
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val secondRow = a[1].as1D()
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val secondColumn = a.transpose(0, 1)[1].as1D()
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val secondRow = a.getTensor(1).as1D()
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val secondColumn = a.transpose(0, 1).getTensor(1).as1D()
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assertEquals(secondColumn[0], 77.89)
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assertEquals(secondRow[1], secondColumn[1])
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}
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