Add readme task validation

Add KSP

CHANGELOG.md

@@ -1,6 +1,6 @@
 # Changelog
-All notable changes to this project will be documented in this file.
 
+All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
@@ -18,22 +18,59 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Security
 
+## 0.15.4-kotlin-2.0.0 - 2024-06-04
+
+### Added
+
+- Pass `compose` extension to the kscience extension so compose dependencies could be called directly from kscience block
+
+### Changed
+
+- Use ES6 modules by default in JS
+- Kotlin 2.0
+
+## 0.15.2-kotlin-1.9.22 - 2024-02-09
+
+### Added
+
+- Add development mode for fullstack.
+
+### Changed
+
+- Kotlin 1.9.20
+- Remove publishing defaults for Space and GitHub. Now publishing repositories is configured quasi-manually. Property keys for username and tokens are generated automatically.
+- All publishing targets are enabled by default. Introduce `publishing.targets` variable to regulate what is added to the module.
+
+### Deprecated
+
+- JVM plugin in favor of Mpp.
+
+### Removed
+
+- JS plugin. It is deprecated in favor of MPP.
+- Unnecessary `dependsOn` for native dependencies. 
+- Groovy gradle dependency notation.
+
 ## 0.14.4-kotlin-1.8.20-RC - 2023-03-12
 
 ### Added
+
 - Easier dependency handling in `kscience` block
 - Customizable base jdk version
 
 ### Changed
+
 - MPP does not use JVM and JS(IR) targets anymore. They could be turned manually via `js()`, `jvm()` or `fullStack()`
 - Signing is not applied if signingId is not provided
 
 ### Removed
+
 - FX plugins
 - Unnecessary library shortcuts (html and datetime)
 - deploy/release tasks
 
 ### Fixed
+
 - Gradle 8 compatibility
 - Dokka publication
 - issues with test sourcesets
@@ -41,9 +78,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## 0.13.4-kotlin-1.8.0 - 2022-12-31
 
 ### Added
+
 - Public `isInDevelopment` project flag
 
 ### Changed
+
 - Require manual pom config for publications
 - Kotlin 1.8.0
 - Versions update
@@ -51,139 +90,172 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Moved `yarn.lock` to `gradle` directory
 
 ### Deprecated
+
 - FX configuration
 
 ### Removed
+
 - Xjdk-release flag because it is broken until https://youtrack.jetbrains.com/issue/KT-52823
 - Use CSS loader in JS by default
 
 ## 0.11.6-kotlin-1.7.0
 
 ### Changed
+
 - Coroutines tests are applied only when explicit `useCoroutines` is used.
 
 ### Removed
+
 - Atomicfu support inside the plugin
 
 ### Fixed
+
 - Rollback coroutines to 1.6.1
 
 ## 0.11.5-kotlin-1.7.0
 
 ### Added
+
 - Coroutine tests as default dependency for tests
 - Context receiver flag
 
 ### Changed
+
 - Separate release tasks for each target
 - Kotlin 1.7.0
 - Ktor 2.0.1
 - ExplicitAPI does not override existing value
 
 ### Removed
+
 - Ktor specific artifacts from version catalog
 
 ### Fixed
+
 - Moved signing out of sonatype block
 
 ## 0.11.1-kotlin-1.6.10
 
 ### Added
+
 - Default templates for README and ARTIFACT
 
 ### Changed
+
 - Replaced Groovy templates by FreeMarker
 
 ### Fixed
+
 - JS publication sources jar
 
 ## 0.10.9-kotlin-1.6.10
 
 ### Added
+
 - html builders for readme
 
 ### Changed
+
 - Kotlin 1.6.0
 - Use indy lambdas by default #32
 - Change version scheme to `<version>-kotlin-<kotlin version>`
 
 ### Fixed
+
 - remove `nativeMain` dependency from `nativeTest`
 
 ## 0.10.4
 
 ### Changed
+
 - Kotlin 1.6
 
 ### Fixed
+
 - Some issues with opt-ins
 
 ## 0.10.2
 
 ### Added
+
 - Experimental automatic JS project bundling in MPP
 
 ### Changed
+
 - Remove vcs requirement for Space publication
 
 ## 0.10.0
 
 ### Added
+
 - Lazy readme properties
 - BOM for kotlin-wrappers on JS
 - Jupyter loader
 
 ### Changed
+
 - API validation disabled for dev versions
 - Kotlin plugins are propagated downstream
 
 ### Removed
+
 - bson support
 
 ## 0.9.5
 
 ### Added
+
 - Disable API validation for snapshots
 - `-Xjvm-default=all` on JVM
 
 ### Changed
+
 - `publication.platform` changed to `publishing.platform`
 - Dokka version to `1.4.30`
 - `useDateTime` in extension
 - Kotlin 1.5
 
 ### Removed
+
 - Publish plugin. Use MavenPublish instead
 
 ### Fixed
+
 - Removed unnecessary `afterEvaluate` for compatibility with gradle 7.0
 
 ## 0.9.0
 
 ### Added
+
 - Skip sonatype publishing for dev versions
 
 ### Changed
+
 - Publishing repositories are explicit and defined in the top level project
 - Paths to publishing properties now use dot notation like `publishing.github.user`
 
 ### Deprecated
+
 - Publishing plugin
 
 ### Removed
+
 - Bintray publishing
 
 ## 0.8.4
 
 ### Added
+
 - Adaptive support for host OS in native
 - CSS support for JS targets
 
 ### Changed
+
 - Kotlin 1.4.31
 - Coroutines 1.4.3
 
 ### Fixed
+
 - Plugin loading order for publishing
 - Release task
 - Readme generation for multi-module project
@@ -191,11 +263,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## 0.8.1
 
 ### Added
+
 - Ktor version to versions
 - Add sonatype publishing
 - Per-platform release publishing
 
 ### Changed
+
 - Kotlin to 1.4.30 stable.
 - Added intermediate jsCommon main/test sourcesSet for node plugin.
 - Plugin names changed to `ru.mipt.npm` package.
@@ -203,15 +277,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Plugins group changed to `ru.mipt.npm` with `gradle` prefix
 
 ### Removed
+
 - kaml
 
 ### Fixed
+
 - Fix publishing load order for sonatype
 - Fix root project readme
 
 ## 0.7.4
 
 ### Added
+
 - Changelog plugin automatically applied to `project`.
 - Feature matrix and Readme generation task for a `project` plugin.
 - Add `binary-compatibility-validator` to the `project` plugin.
@@ -220,6 +297,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Suppress API validation for modules with maturity below DEVELOPMENT
 
 ### Changed
+
 - Remove node plugin. Node binaries should be turned on manually.
 - Use default webpack distribution path.
 - `ru.mipt.npm.base` -> `ru.mipt.npm.project`.
@@ -230,15 +308,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Kotlin 1.4.30-RC
 
 ### Deprecated
+
 - Support of `kaml` and `snake-yaml` in favor of `yamlKt`
 - Publish plugin
 
 ### Removed
+
 - `useDokka` method. Documentation jar should be added manually if needed.
 
 ## 0.6.0
 
 ### Added
+
 - Migrate to kotlin 1.4.0
 - Separate Native (current platform) and nodeJs plugins.
 - Add `application()` toggle in plugin configuration to produce binaries on JS and applicaion plugin on jvm.
@@ -247,4 +328,5 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## 0.5.2
 
 ### Added
+
 - Copy resources for jvm modules and jvm source sets in mpp.

build.gradle.kts

@@ -4,8 +4,10 @@ plugins {
     `maven-publish`
     signing
     `version-catalog`
-    alias(libs.plugins.changelog)
-    alias(libs.plugins.dokka)
+    alias(libs.plugins.jetbrains.changelog)
+    alias(libs.plugins.jetbrains.dokka)
+    alias(libs.plugins.versions)
+    alias(libs.plugins.versions.update)
 }
 
 group = "space.kscience"
@@ -21,21 +23,20 @@ repositories {
     maven("https://repo.kotlin.link")
 }
 
-kotlin.explicitApiWarning()
-
 dependencies {
     api(libs.kotlin.gradle)
+    api(libs.foojay.resolver)
     implementation(libs.binary.compatibility.validator)
     implementation(libs.changelog.gradle)
     implementation(libs.dokka.gradle)
     implementation(libs.kotlin.jupyter.gradle)
     implementation(libs.kotlin.serialization)
     implementation(libs.kotlinx.html)
-    implementation("org.tomlj:tomlj:1.1.0")
+    implementation(libs.tomlj)
 //    // nexus publishing plugin
-//    implementation("io.github.gradle-nexus:publish-plugin:1.1.0")
+//    implementation("io.github.gradle-nexus:publish-plugin:_")
 
-    implementation("org.freemarker:freemarker:2.3.31")
+    implementation(libs.freemarker)
 
     testImplementation(kotlin("test"))
 }
@@ -65,23 +66,17 @@ gradlePlugin {
             description = "Pre-configured JVM project"
             implementationClass = "space.kscience.gradle.KScienceJVMPlugin"
         }
-
-        create("js") {
-            id = "space.kscience.gradle.js"
-            description = "Pre-configured JS project"
-            implementationClass = "space.kscience.gradle.KScienceJSPlugin"
-        }
     }
 }
 
 tasks.create("version") {
     group = "publishing"
-    val versionFile = project.buildDir.resolve("project-version.txt")
-    outputs.file(versionFile)
+    val versionFileProvider = project.layout.buildDirectory.file("project-version.txt")
+    outputs.file(versionFileProvider)
     doLast {
+        val versionFile = versionFileProvider.get().asFile
         versionFile.createNewFile()
         versionFile.writeText(project.version.toString())
-        println(project.version)
     }
 }
 
@@ -117,7 +112,7 @@ val emptySourcesJar by tasks.creating(Jar::class) {
 }
 
 publishing {
-    val vcs = "https://github.com/mipt-npm/gradle-tools"
+    val vcs = "https://github.com/SciProgCentre/gradle-tools"
 
     // Process each publication we have in this project
     publications {
@@ -151,10 +146,10 @@ publishing {
 
                 developers {
                     developer {
-                        id.set("MIPT-NPM")
-                        name.set("MIPT nuclear physics methods laboratory")
-                        organization.set("MIPT")
-                        organizationUrl.set("https://npm.mipt.ru")
+                        id.set("SPC")
+                        name.set("Scientific Programming Centre")
+                        organization.set("SPC")
+                        organizationUrl.set("https://sciprog.center/")
                     }
                 }
 
@@ -166,20 +161,18 @@ publishing {
         }
     }
 
-    val spaceRepo = "https://maven.pkg.jetbrains.space/spc/p/sci/maven"
-    val spaceUser: String? = findProperty("publishing.space.user") as? String
-    val spaceToken: String? = findProperty("publishing.space.token") as? String
-
-    if (spaceUser != null && spaceToken != null) {
-        project.logger.info("Adding mipt-npm Space publishing to project [${project.name}]")
+    val spaceRepo = "https://maven.sciprog.center/kscience"
+    val spcUser: String? = findProperty("publishing.spc.user") as? String
+    val spcToken: String? = findProperty("publishing.spc.token") as? String
 
+    if (spcUser != null && spcToken != null) {
         repositories.maven {
-            name = "space"
+            name = "spc"
             url = uri(spaceRepo)
 
             credentials {
-                username = spaceUser
-                password = spaceToken
+                username = spcUser
+                password = spcToken
             }
         }
     }
@@ -211,11 +204,9 @@ publishing {
     }
 }
 
-
 kotlin {
-    jvmToolchain {
-        languageVersion.set(JavaLanguageVersion.of(11))
-    }
+    explicitApiWarning()
+    jvmToolchain(17)
 }
 
 tasks.processResources.configure {
@@ -227,3 +218,13 @@ tasks.processResources.configure {
 tasks.withType<AbstractPublishToMaven>().configureEach {
     mustRunAfter(tasks.withType<Sign>())
 }
+
+versionCatalogUpdate {
+    sortByKey.set(false)
+    keep {
+        keepUnusedVersions = true
+        keepUnusedPlugins = true
+        keepUnusedLibraries = true
+    }
+}
+ 

gradle.properties

@@ -1 +1,3 @@
 kotlin.code.style=official
+
+nl.littlerobots.vcu.resolver=true

gradle/libs.versions.toml

@@ -1,103 +1,41 @@
 [versions]
-tools = "0.14.4-kotlin-1.8.20-RC"
-kotlin = "1.8.20-RC"
-atomicfu = "0.19.0"
-binary-compatibility-validator = "0.12.1"
-changelog = "2.0.0"
-dokka = "1.7.20"
-kotlin-jupyter = "0.11.0-317"
-kotlinx-benchmark = "0.4.7"
-kotlinx-cli = "0.3.5"
-kotlinx-coroutines = "1.6.4"
-kotlinx-datetime = "0.4.0"
-kotlinx-html = "0.8.0"
-kotlinx-knit = "0.4.0"
+# @pin
+kotlin = "2.0.20"
+# @pin
+tools = "0.15.7-kotlin-2.0.20"
+atomicfu = "0.25.0"
+changelog = "2.2.1"
+compose = "1.6.11"
+dokka = "1.9.20"
+jsBom = "1.0.0-pre.798"
+junit = "5.10.2"
+kotlin-jupyter = "0.12.0-275"
+kotlinx-benchmark = "0.4.12"
+kotlinx-cli = "0.3.6"
+kotlinx-coroutines = "1.8.1"
+kotlinx-datetime = "0.6.1"
+kotlinx-html = "0.11.0"
+kotlinx-knit = "0.5.0"
 kotlinx-nodejs = "0.0.7"
-kotlinx-serialization = "1.4.1"
-ktor = "2.2.3"
-xmlutil = "0.84.3"
-yamlkt = "0.12.0"
-jsBom = "1.0.0-pre.509"
-junit = "5.9.2"
-compose = "1.3.0"
-logback = "1.4.5"
-
-[libraries]
-atomicfu-gradle = { module = "org.jetbrains.kotlinx:atomicfu-gradle-plugin", version.ref = "atomicfu" }
-atomicfu = { module = "org.jetbrains.kotlinx:atomicfu", version.ref = "atomicfu" }
-
-binary-compatibility-validator = { module = "org.jetbrains.kotlinx:binary-compatibility-validator", version.ref = "binary-compatibility-validator" }
-
-changelog-gradle = { module = "org.jetbrains.intellij.plugins:gradle-changelog-plugin", version.ref = "changelog" }
-
-dokka-gradle = { module = "org.jetbrains.dokka:dokka-gradle-plugin", version.ref = "dokka" }
-
-kotlin-gradle = { module = "org.jetbrains.kotlin:kotlin-gradle-plugin", version.ref = "kotlin" }
-kotlin-serialization = { module = "org.jetbrains.kotlin:kotlin-serialization", version.ref = "kotlin" }
-
-kotlin-jupyter-gradle = { module = "org.jetbrains.kotlin:kotlin-jupyter-api-gradle-plugin", version.ref = "kotlin-jupyter" }
-
-kotlinx-benchmark-runtime = { module = "org.jetbrains.kotlinx:kotlinx-benchmark-runtime", version.ref = "kotlinx-benchmark" }
-
-kotlinx-coroutines-core = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-core", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-test = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-test", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-debug = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-debug", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-reactive = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-reactive", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-reactor = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-reactor", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-rx2 = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-rx2", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-rx3 = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-rx3", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-android = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-android", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-javafx = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-javafx", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-swing = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-swing", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-jdk8 = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-jdk8", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-guava = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-guava", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-slf4j = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-slf4j", version.ref = "kotlinx-coroutines" }
-kotlinx-coroutines-play-services = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-play-services", version.ref = "kotlinx-coroutines" }
-
-kotlinx-cli = { module = "org.jetbrains.kotlinx:kotlinx-cli", version.ref = "kotlinx-cli" }
-
-kotlinx-datetime = { module = "org.jetbrains.kotlinx:kotlinx-datetime", version.ref = "kotlinx-datetime" }
-
-kotlinx-html = { module = "org.jetbrains.kotlinx:kotlinx-html", version.ref = "kotlinx-html" }
-
-kotlinx-knit = { module = "org.jetbrains.kotlinx:kotlinx-knit", version.ref = "kotlinx-knit" }
-
-kotlinx-nodejs = { module = "org.jetbrains.kotlinx:kotlinx-nodejs", version.ref = "kotlinx-nodejs" }
-
-kotlinx-serialization-cbor = { module = "org.jetbrains.kotlinx:kotlinx-serialization-cbor", version.ref = "kotlinx-serialization" }
-kotlinx-serialization-core = { module = "org.jetbrains.kotlinx:kotlinx-serialization-core", version.ref = "kotlinx-serialization" }
-kotlinx-serialization-hocon = { module = "org.jetbrains.kotlinx:kotlinx-serialization-hocon", version.ref = "kotlinx-serialization" }
-kotlinx-serialization-json = { module = "org.jetbrains.kotlinx:kotlinx-serialization-json", version.ref = "kotlinx-serialization" }
-kotlinx-serialization-protobuf = { module = "org.jetbrains.kotlinx:kotlinx-serialization-protobuf", version.ref = "kotlinx-serialization" }
-kotlinx-serialization-properties = { module = "org.jetbrains.kotlinx:kotlinx-serialization-properties", version.ref = "kotlinx-serialization" }
-
-ktor-bom = { module = "io.ktor:ktor-bom", version.ref = "ktor" }
-
-xmlutil-core = { module = "io.github.pdvrieze.xmlutil:core", version.ref = "xmlutil" }
-xmlutil-ktor = { module = "io.github.pdvrieze.xmlutil:ktor", version.ref = "xmlutil" }
-xmlutil-serialization = { module = "io.github.pdvrieze.xmlutil:serialization", version.ref = "xmlutil" }
-
-yamlkt = { module = "net.mamoe.yamlkt:yamlkt", version.ref = "yamlkt" }
-
-logback-classic = {module = "ch.qos.logback:logback-classic", version.ref = "logback"}
+kotlinx-serialization = "1.7.1"
+kover = "0.8.3"
+ktor = "2.3.12"
+ksp = "2.0.20-1.0.24"
+logback = "1.5.7"
+slf4j = "2.0.16"
+xmlutil = "0.90.1"
+yamlkt = "0.13.0"
 
 [plugins]
-changelog = { id = "org.jetbrains.changelog", version.ref = "changelog" }
-
-dokka = { id = "org.jetbrains.dokka", version.ref = "dokka" }
-compose = {id = "org.jetbrains.compose", version.ref = "compose"}
-
-gradle-common = { id = "space.kscience.gradle.common", version.ref = "tools" }
-gradle-project = { id = "space.kscience.gradle.project", version.ref = "tools" }
-gradle-mpp = { id = "space.kscience.gradle.mpp", version.ref = "tools" }
-gradle-jvm = { id = "space.kscience.gradle.jvm", version.ref = "tools" }
-gradle-js = { id = "space.kscience.gradle.js", version.ref = "tools" }
-gradle-native = { id = "space.kscience.gradle.native", version.ref = "tools" }
-gradle-node = { id = "space.kscience.gradle.node", version.ref = "tools" }
-
+compose-compiler = { id = "org.jetbrains.kotlin.plugin.compose", version.ref = "kotlin" }
+compose-jb = { id = "org.jetbrains.compose", version.ref = "compose" }
+jetbrains-changelog = "org.jetbrains.changelog:2.2.1"
+jetbrains-dokka = "org.jetbrains.dokka:1.9.20"
 kotlin-android = { id = "org.jetbrains.kotlin.android", version.ref = "kotlin" }
 kotlin-android-extensions = { id = "org.jetbrains.kotlin.android.extensions", version.ref = "kotlin" }
+kotlin-dsl = "org.gradle.kotlin.kotlin-dsl:5.1.0"
 kotlin-js = { id = "org.jetbrains.kotlin.js", version.ref = "kotlin" }
+kotlin-jupyter-api = { id = "org.jetbrains.kotlin.jupyter.api", version.ref = "kotlin-jupyter" }
 kotlin-jvm = { id = "org.jetbrains.kotlin.jvm", version.ref = "kotlin" }
 kotlin-kapt = { id = "org.jetbrains.kotlin.kapt", version.ref = "kotlin" }
 kotlin-multiplatform = { id = "org.jetbrains.kotlin.multiplatform", version.ref = "kotlin" }
@@ -110,7 +48,70 @@ kotlin-plugin-parcelize = { id = "org.jetbrains.kotlin.plugin.parcelize", versio
 kotlin-plugin-scripting = { id = "org.jetbrains.kotlin.plugin.scripting", version.ref = "kotlin" }
 kotlin-plugin-serialization = { id = "org.jetbrains.kotlin.plugin.serialization", version.ref = "kotlin" }
 kotlin-plugin-spring = { id = "org.jetbrains.kotlin.plugin.spring", version.ref = "kotlin" }
-
-kotlin-jupyter-api = { id = "org.jetbrains.kotlin.jupyter.api", version.ref = "kotlin-jupyter" }
-
 kotlinx-benchmark = { id = "org.jetbrains.kotlinx.benchmark", version.ref = "kotlinx-benchmark" }
+kotlinx-kover = { id = "org.jetbrains.kotlinx.kover", version.ref = "kover" }
+kscience-mpp = { id = "space.kscience.gradle.mpp", version.ref = "tools" }
+kscience-project = { id = "space.kscience.gradle.project", version.ref = "tools" }
+ksp = { id = "com.google.devtools.ksp", version.ref = "ksp" }
+ktor = { id = "io.ktor.plugin", version.ref = "ktor" }
+versions = "com.github.ben-manes.versions:0.51.0"
+versions-update = "nl.littlerobots.version-catalog-update:0.8.4"
+
+[libraries]
+atomicfu = { module = "org.jetbrains.kotlinx:atomicfu", version.ref = "atomicfu" }
+atomicfu-gradle = { module = "org.jetbrains.kotlinx:atomicfu-gradle-plugin", version.ref = "atomicfu" }
+binary-compatibility-validator = "org.jetbrains.kotlinx:binary-compatibility-validator:0.15.0-Beta.3"
+changelog-gradle = { module = "org.jetbrains.intellij.plugins:gradle-changelog-plugin", version.ref = "changelog" }
+dokka-base = { module = "org.jetbrains.dokka:dokka-base", version.ref = "dokka" }
+dokka-gradle = { module = "org.jetbrains.dokka:dokka-gradle-plugin", version.ref = "dokka" }
+dokka-gradle-plugin = { module = "org.jetbrains.dokka:dokka-gradle-plugin", version.ref = "dokka" }
+foojay-resolver = "org.gradle.toolchains:foojay-resolver:0.8.0"
+freemarker = "org.freemarker:freemarker:2.3.33"
+gradle-changelog-plugin = { module = "org.jetbrains.intellij.plugins:gradle-changelog-plugin", version.ref = "changelog" }
+kotlin-assignment-compiler-plugin-embeddable = { module = "org.jetbrains.kotlin:kotlin-assignment-compiler-plugin-embeddable", version.ref = "kotlin" }
+kotlin-gradle = { module = "org.jetbrains.kotlin:kotlin-gradle-plugin", version.ref = "kotlin" }
+kotlin-gradle-plugin = { module = "org.jetbrains.kotlin:kotlin-gradle-plugin", version.ref = "kotlin" }
+kotlin-js-wrappers = { module = "org.jetbrains.kotlin-wrappers:kotlin-wrappers-bom", version.ref = "jsBom" }
+kotlin-jupyter-api-gradle-plugin = { module = "org.jetbrains.kotlin:kotlin-jupyter-api-gradle-plugin", version.ref = "kotlin" }
+kotlin-jupyter-gradle = { module = "org.jetbrains.kotlin:kotlin-jupyter-api-gradle-plugin", version.ref = "kotlin-jupyter" }
+kotlin-reflect = { module = "org.jetbrains.kotlin:kotlin-reflect", version.ref = "kotlin" }
+kotlin-sam-with-receiver-compiler-plugin-embeddable = { module = "org.jetbrains.kotlin:kotlin-sam-with-receiver-compiler-plugin-embeddable", version.ref = "kotlin" }
+kotlin-scripting-compiler-embeddable = { module = "org.jetbrains.kotlin:kotlin-scripting-compiler-embeddable", version.ref = "kotlin" }
+kotlin-serialization = { module = "org.jetbrains.kotlin:kotlin-serialization", version.ref = "kotlin" }
+kotlin-stdlib = { module = "org.jetbrains.kotlin:kotlin-stdlib", version.ref = "kotlin" }
+kotlin-test = { module = "org.jetbrains.kotlin:kotlin-test" }
+kotlinx-benchmark-runtime = { module = "org.jetbrains.kotlinx:kotlinx-benchmark-runtime", version.ref = "kotlinx-benchmark" }
+kotlinx-cli = { module = "org.jetbrains.kotlinx:kotlinx-cli", version.ref = "kotlinx-cli" }
+kotlinx-coroutines-android = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-android", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-core = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-core", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-debug = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-debug", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-guava = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-guava", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-javafx = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-javafx", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-jdk8 = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-jdk8", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-play-services = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-play-services", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-reactive = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-reactive", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-reactor = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-reactor", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-rx2 = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-rx2", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-rx3 = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-rx3", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-slf4j = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-slf4j", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-swing = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-swing", version.ref = "kotlinx-coroutines" }
+kotlinx-coroutines-test = { module = "org.jetbrains.kotlinx:kotlinx-coroutines-test", version.ref = "kotlinx-coroutines" }
+kotlinx-datetime = { module = "org.jetbrains.kotlinx:kotlinx-datetime", version.ref = "kotlinx-datetime" }
+kotlinx-html = { module = "org.jetbrains.kotlinx:kotlinx-html", version.ref = "kotlinx-html" }
+kotlinx-knit = { module = "org.jetbrains.kotlinx:kotlinx-knit", version.ref = "kotlinx-knit" }
+kotlinx-nodejs = { module = "org.jetbrains.kotlinx:kotlinx-nodejs", version.ref = "kotlinx-nodejs" }
+kotlinx-serialization-cbor = { module = "org.jetbrains.kotlinx:kotlinx-serialization-cbor", version.ref = "kotlinx-serialization" }
+kotlinx-serialization-core = { module = "org.jetbrains.kotlinx:kotlinx-serialization-core", version.ref = "kotlinx-serialization" }
+kotlinx-serialization-hocon = { module = "org.jetbrains.kotlinx:kotlinx-serialization-hocon", version.ref = "kotlinx-serialization" }
+kotlinx-serialization-json = { module = "org.jetbrains.kotlinx:kotlinx-serialization-json", version.ref = "kotlinx-serialization" }
+kotlinx-serialization-properties = { module = "org.jetbrains.kotlinx:kotlinx-serialization-properties", version.ref = "kotlinx-serialization" }
+kotlinx-serialization-protobuf = { module = "org.jetbrains.kotlinx:kotlinx-serialization-protobuf", version.ref = "kotlinx-serialization" }
+ksp-api = { module = "com.google.devtools.ksp:symbol-processing-api", version.ref = "ksp" }
+ktor-bom = { module = "io.ktor:ktor-bom", version.ref = "ktor" }
+logback-classic = { module = "ch.qos.logback:logback-classic", version.ref = "logback" }
+slf4j = { module = "org.slf4j:slf4j-api", version.ref = "slf4j" }
+tomlj = "org.tomlj:tomlj:1.1.1"
+xmlutil-core = { module = "io.github.pdvrieze.xmlutil:core", version.ref = "xmlutil" }
+xmlutil-ktor = { module = "io.github.pdvrieze.xmlutil:ktor", version.ref = "xmlutil" }
+xmlutil-serialization = { module = "io.github.pdvrieze.xmlutil:serialization", version.ref = "xmlutil" }
+yamlkt = { module = "net.mamoe.yamlkt:yamlkt", version.ref = "yamlkt" }

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.0.2-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.10-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

settings.gradle.kts

@@ -1 +1,5 @@
 rootProject.name = "gradle-tools"
+
+plugins {
+    id("org.gradle.toolchains.foojay-resolver-convention") version("0.8.0")
+}

src/main/kotlin/space/kscience/gradle/KScienceExtension.kt

@@ -3,28 +3,33 @@ package space.kscience.gradle
 import org.gradle.api.Project
 import org.gradle.api.file.DuplicatesStrategy
 import org.gradle.api.plugins.ApplicationPlugin
+import org.gradle.api.plugins.ExtensionAware
 import org.gradle.api.provider.Property
 import org.gradle.api.tasks.Copy
 import org.gradle.api.tasks.testing.Test
 import org.gradle.jvm.toolchain.JavaLanguageVersion
 import org.gradle.kotlin.dsl.*
 import org.gradle.language.jvm.tasks.ProcessResources
+import org.jetbrains.kotlin.gradle.ExperimentalKotlinGradlePluginApi
+import org.jetbrains.kotlin.gradle.ExperimentalWasmDsl
 import org.jetbrains.kotlin.gradle.dsl.KotlinJsProjectExtension
 import org.jetbrains.kotlin.gradle.dsl.KotlinJvmProjectExtension
 import org.jetbrains.kotlin.gradle.dsl.KotlinMultiplatformExtension
 import org.jetbrains.kotlin.gradle.dsl.KotlinProjectExtension
+import org.jetbrains.kotlin.gradle.plugin.KotlinCompilation
 import org.jetbrains.kotlin.gradle.plugin.KotlinDependencyHandler
 import org.jetbrains.kotlin.gradle.plugin.mpp.KotlinNativeTarget
-import org.jetbrains.kotlin.gradle.targets.js.dsl.ExperimentalWasmDsl
 import org.jetbrains.kotlin.gradle.targets.js.dsl.KotlinJsBrowserDsl
 import org.jetbrains.kotlin.gradle.targets.js.dsl.KotlinJsTargetDsl
-import org.jetbrains.kotlin.gradle.targets.js.dsl.KotlinWasmTargetDsl
+import org.jetbrains.kotlin.gradle.targets.js.dsl.KotlinWasmJsTargetDsl
 import org.jetbrains.kotlin.gradle.targets.jvm.KotlinJvmTarget
 import org.jetbrains.kotlin.gradle.tasks.KotlinCompile
 import org.jetbrains.kotlinx.jupyter.api.plugin.tasks.JupyterApiResourcesTask
 import space.kscience.gradle.internal.defaultKotlinJvmArgs
 import space.kscience.gradle.internal.fromJsDependencies
+import space.kscience.gradle.internal.requestPropertyOrNull
 import space.kscience.gradle.internal.useCommonDependency
+import javax.inject.Inject
 
 public enum class DependencyConfiguration {
     API,
@@ -47,9 +52,9 @@ public val Project.isInDevelopment: Boolean
             || version.toString().endsWith("SNAPSHOT")
 
 
-private const val defaultJdkVersion = 11
+private const val defaultJdkVersion = 17
 
-public open class KScienceExtension(public val project: Project) {
+public abstract class KScienceExtension @Inject constructor(public val project: Project): ExtensionAware {
 
     public val jdkVersionProperty: Property<Int> = project.objects.property<Int>().apply {
         set(defaultJdkVersion)
@@ -105,7 +110,7 @@ public open class KScienceExtension(public val project: Project) {
             configure<KotlinMultiplatformExtension> {
                 sourceSets.findByName("commonMain")?.apply {
                     dependencies {
-                        api(platform("io.ktor:ktor-bom:$version"))
+                        api(project.dependencies.platform("io.ktor:ktor-bom:$version"))
                     }
                 }
             }
@@ -114,7 +119,7 @@ public open class KScienceExtension(public val project: Project) {
             configure<KotlinJvmProjectExtension> {
                 sourceSets.findByName("main")?.apply {
                     dependencies {
-                        api(platform("io.ktor:ktor-bom:$version"))
+                        api(project.dependencies.platform("io.ktor:ktor-bom:$version"))
                     }
                 }
             }
@@ -123,7 +128,7 @@ public open class KScienceExtension(public val project: Project) {
             configure<KotlinJsProjectExtension> {
                 sourceSets.findByName("main")?.apply {
                     dependencies {
-                        api(platform("io.ktor:ktor-bom:$version"))
+                        api(project.dependencies.platform("io.ktor:ktor-bom:$version"))
                     }
                 }
             }
@@ -153,14 +158,6 @@ public open class KScienceExtension(public val project: Project) {
             }
         }
 
-        project.pluginManager.withPlugin("org.jetbrains.kotlin.js") {
-            project.configure<KotlinJsProjectExtension> {
-                sourceSets.getByName(sourceSet ?: "main") {
-                    dependencies(dependencyBlock)
-                }
-            }
-        }
-
         project.pluginManager.withPlugin("org.jetbrains.kotlin.multiplatform") {
             project.configure<KotlinMultiplatformExtension> {
                 sourceSets.getByName(sourceSet ?: "commonMain") {
@@ -179,13 +176,6 @@ public open class KScienceExtension(public val project: Project) {
             }
         }
 
-        project.pluginManager.withPlugin("org.jetbrains.kotlin.js") {
-            project.configure<KotlinJsProjectExtension> {
-                sourceSets.getByName(sourceSet ?: "test") {
-                    dependencies(dependencyBlock)
-                }
-            }
-        }
 
         project.pluginManager.withPlugin("org.jetbrains.kotlin.multiplatform") {
             project.configure<KotlinMultiplatformExtension> {
@@ -207,6 +197,7 @@ public open class KScienceExtension(public val project: Project) {
     /**
      * Mark this module as an application module. JVM application should be enabled separately
      */
+    @Deprecated("Use platform-specific applications")
     public fun application() {
         project.extensions.findByType<KotlinProjectExtension>()?.apply {
             explicitApi = null
@@ -231,7 +222,7 @@ public open class KScienceExtension(public val project: Project) {
                 binaries.executable()
             }
 
-            targets.withType<KotlinWasmTargetDsl> {
+            targets.withType<KotlinWasmJsTargetDsl> {
                 binaries.executable()
             }
         }
@@ -242,8 +233,8 @@ public open class KScienceExtension(public val project: Project) {
      */
     public fun useContextReceivers() {
         project.tasks.withType<KotlinCompile> {
-            kotlinOptions {
-                freeCompilerArgs = freeCompilerArgs + "-Xcontext-receivers"
+            compilerOptions{
+              freeCompilerArgs.add("-Xcontext-receivers")
             }
         }
     }
@@ -261,8 +252,8 @@ public open class KScienceExtension(public val project: Project) {
     public val jsTest: DefaultSourceSet get() = DefaultSourceSet("jsTest")
     public val nativeMain: DefaultSourceSet get() = DefaultSourceSet("nativeMain")
     public val nativeTest: DefaultSourceSet get() = DefaultSourceSet("nativeTest")
-    public val wasmMain: DefaultSourceSet get() = DefaultSourceSet("wasmMain")
-    public val wasmTest: DefaultSourceSet get() = DefaultSourceSet("wasmTest")
+    public val wasmJsMain: DefaultSourceSet get() = DefaultSourceSet("wasmJsMain")
+    public val wasmJsTest: DefaultSourceSet get() = DefaultSourceSet("wasmJsTest")
 
 }
 
@@ -285,21 +276,37 @@ public data class KScienceNativeTarget(
         public val linuxX64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.linuxX64)
         public val mingwX64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.mingwX64)
         public val macosX64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.macosX64)
-        public val macosArm64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.macosX64)
+        public val macosArm64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.macosArm64)
         public val iosX64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.iosX64)
         public val iosArm64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.iosArm64)
         public val iosSimulatorArm64: KScienceNativeTarget = KScienceNativeTarget(KotlinNativePreset.iosSimulatorArm64)
     }
 }
 
-public class KScienceNativeConfiguration {
+public class KScienceNativeConfiguration(private val project: Project) {
 
 
     internal companion object {
-        private fun defaultNativeTargets(): Map<KotlinNativePreset, KScienceNativeTarget> {
-
+        private fun defaultNativeTargets(project: Project): Map<KotlinNativePreset, KScienceNativeTarget> {
             val hostOs = System.getProperty("os.name")
+
+            val targets = project.requestPropertyOrNull("publishing.targets")
+
             return when {
+                targets == "all" -> listOf(
+                    KScienceNativeTarget.linuxX64,
+                    KScienceNativeTarget.mingwX64,
+                    KScienceNativeTarget.macosX64,
+                    KScienceNativeTarget.macosArm64,
+                    KScienceNativeTarget.iosX64,
+                    KScienceNativeTarget.iosArm64,
+                    KScienceNativeTarget.iosSimulatorArm64,
+                )
+
+                targets != null -> {
+                    targets.split(",").map { KScienceNativeTarget(KotlinNativePreset.valueOf(it)) }
+                }
+
                 hostOs.startsWith("Windows") -> listOf(
                     KScienceNativeTarget.linuxX64,
                     KScienceNativeTarget.mingwX64
@@ -314,6 +321,7 @@ public class KScienceNativeConfiguration {
                 )
 
                 hostOs == "Linux" -> listOf(KScienceNativeTarget.linuxX64)
+
                 else -> {
                     emptyList()
                 }
@@ -322,7 +330,7 @@ public class KScienceNativeConfiguration {
     }
 
 
-    internal var targets: Map<KotlinNativePreset, KScienceNativeTarget> = defaultNativeTargets()
+    internal var targets: Map<KotlinNativePreset, KScienceNativeTarget> = defaultNativeTargets(project)
 
 
     /**
@@ -346,7 +354,8 @@ public class KScienceNativeConfiguration {
     ): Unit = target(KScienceNativeTarget(preset, targetName, targetConfiguration))
 }
 
-public open class KScienceMppExtension(project: Project) : KScienceExtension(project) {
+public abstract class KScienceMppExtension @Inject constructor(project: Project) : KScienceExtension(project) {
+
     /**
      * Enable jvm target
      */
@@ -354,10 +363,9 @@ public open class KScienceMppExtension(project: Project) : KScienceExtension(pro
         project.pluginManager.withPlugin("org.jetbrains.kotlin.multiplatform") {
             project.configure<KotlinMultiplatformExtension> {
                 jvm {
-                    compilations.all {
-                        kotlinOptions {
-                            freeCompilerArgs = freeCompilerArgs + defaultKotlinJvmArgs
-                        }
+                    @OptIn(ExperimentalKotlinGradlePluginApi::class)
+                    compilerOptions{
+                        freeCompilerArgs.addAll(defaultKotlinJvmArgs)
                     }
                     block()
                 }
@@ -387,6 +395,7 @@ public open class KScienceMppExtension(project: Project) : KScienceExtension(pro
             project.configure<KotlinMultiplatformExtension> {
                 js(IR) {
                     browser()
+                    useEsModules()
                     block()
                 }
                 sourceSets {
@@ -403,14 +412,31 @@ public open class KScienceMppExtension(project: Project) : KScienceExtension(pro
         }
     }
 
+    /**
+     * Add Wasm/Js target
+     */
     @OptIn(ExperimentalWasmDsl::class)
-    public fun wasm(block: KotlinWasmTargetDsl.() -> Unit = {}) {
+    public fun wasm(block: KotlinWasmJsTargetDsl.() -> Unit = {}) {
+
         project.pluginManager.withPlugin("org.jetbrains.kotlin.multiplatform") {
             project.configure<KotlinMultiplatformExtension> {
-                wasm {
-                    browser()
+                wasmJs {
+                    browser {
+                        testTask {
+                            useKarma {
+                                useChromeHeadless()
+                            }
+                        }
+                    }
                     block()
                 }
+                sourceSets {
+                    getByName("wasmJsTest") {
+                        dependencies {
+                            implementation(kotlin("test-wasm-js"))
+                        }
+                    }
+                }
             }
         }
     }
@@ -425,26 +451,30 @@ public open class KScienceMppExtension(project: Project) : KScienceExtension(pro
      */
     public fun fullStack(
         bundleName: String = "js/bundle.js",
+        development: Boolean = false,
         jvmConfig: KotlinJvmTarget.() -> Unit = {},
         jsConfig: KotlinJsTargetDsl.() -> Unit = {},
         browserConfig: KotlinJsBrowserDsl.() -> Unit = {},
     ) {
         js {
-            binaries.executable()
             browser {
-                webpackTask {
+                commonWebpackConfig{
                     outputFileName = bundleName
                 }
                 browserConfig()
             }
+            useEsModules()
             jsConfig()
+            binaries.executable()
         }
         jvm {
             val processResourcesTaskName =
-                compilations[org.jetbrains.kotlin.gradle.plugin.KotlinCompilation.MAIN_COMPILATION_NAME]
-                    .processResourcesTaskName
+                compilations[KotlinCompilation.MAIN_COMPILATION_NAME].processResourcesTaskName
 
-            val jsBrowserDistribution = project.tasks.getByName("jsBrowserDistribution")
+
+            val jsBrowserDistribution = project.tasks.getByName(
+                if (development) "jsBrowserDevelopmentExecutableDistribution" else "jsBrowserDistribution"
+            )
 
             project.tasks.getByName<ProcessResources>(processResourcesTaskName) {
                 duplicatesStrategy = DuplicatesStrategy.WARN
@@ -459,11 +489,10 @@ public open class KScienceMppExtension(project: Project) : KScienceExtension(pro
      * Enable all supported native targets
      */
     public fun native(block: KScienceNativeConfiguration.() -> Unit = {}): Unit = with(project) {
-        val nativeConfiguration = KScienceNativeConfiguration().apply(block)
+        val nativeConfiguration = KScienceNativeConfiguration(this).apply(block)
         pluginManager.withPlugin("org.jetbrains.kotlin.multiplatform") {
             configure<KotlinMultiplatformExtension> {
-                val nativeTargets: List<KotlinNativeTarget> =
-                    nativeConfiguration.targets.values.map { nativeTarget ->
+                nativeConfiguration.targets.values.forEach { nativeTarget ->
                     when (nativeTarget.preset) {
                         KotlinNativePreset.linuxX64 -> linuxX64(
                             nativeTarget.targetName,
@@ -499,50 +528,20 @@ public open class KScienceMppExtension(project: Project) : KScienceExtension(pro
                             nativeTarget.targetName,
                             nativeTarget.targetConfiguration
                         )
+                    }
+                }
+                applyDefaultHierarchyTemplate()
+            }
+        }
+    }
+}
 
-//                                else -> {
-//                                    logger.error("Native preset ${nativeTarget.preset} not recognised.")
-//                                    null
+
+internal inline fun <reified T : KScienceExtension> Project.registerKScienceExtension():T {
+//    extensions.findByType<T>()?.let { return it }
+//    return constructor(this).also {
+//        extensions.add("kscience", it)
 //    }
-                        }
-                    }
 
-                sourceSets {
-                    val commonMain by getting
-                    val commonTest by getting
-
-                    val nativeMain by creating {
-                        dependsOn(commonMain)
-                    }
-
-                    val nativeTest by creating {
-                        //should NOT depend on nativeMain because automatic dependency by plugin
-                        dependsOn(commonTest)
-                    }
-
-                    configure(nativeTargets) {
-                        compilations["main"]?.apply {
-                            configure(kotlinSourceSets) {
-                                dependsOn(nativeMain)
-                            }
-                        }
-
-                        compilations["test"]?.apply {
-                            configure(kotlinSourceSets) {
-                                dependsOn(nativeTest)
-                            }
-                        }
-                    }
-                }
-            }
-        }
-    }
-}
-
-
-internal inline fun <reified T : KScienceExtension> Project.registerKScienceExtension(constructor: (Project) -> T): T {
-    extensions.findByType<T>()?.let { return it }
-    return constructor(this).also {
-        extensions.add("kscience", it)
-    }
+    return extensions.create("kscience", T::class.java)
 }

src/main/kotlin/space/kscience/gradle/KScienceJSPlugin.kt

@@ -1,56 +0,0 @@
-package space.kscience.gradle
-
-import org.gradle.api.Plugin
-import org.gradle.api.Project
-import org.gradle.api.tasks.Copy
-import org.gradle.kotlin.dsl.apply
-import org.gradle.kotlin.dsl.configure
-import org.gradle.kotlin.dsl.get
-import org.jetbrains.dokka.gradle.DokkaPlugin
-import org.jetbrains.kotlin.gradle.dsl.KotlinJsProjectExtension
-import space.kscience.gradle.internal.applySettings
-import space.kscience.gradle.internal.fromJsDependencies
-
-public open class KScienceJSPlugin : Plugin<Project> {
-    override fun apply(project: Project): Unit = project.run {
-        if (!plugins.hasPlugin("org.jetbrains.kotlin.js")) {
-            plugins.apply("org.jetbrains.kotlin.js")
-        } else {
-            logger.info("Kotlin JS plugin is already present")
-        }
-        registerKScienceExtension(::KScienceExtension)
-
-        //logger.info("Applying KScience configuration for JS project")
-        configure<KotlinJsProjectExtension> {
-            js(IR) { browser { } }
-
-            sourceSets.all {
-                languageSettings.applySettings()
-            }
-
-            sourceSets["main"].apply {
-                dependencies {
-                    api(project.dependencies.platform("org.jetbrains.kotlin-wrappers:kotlin-wrappers-bom:${KScienceVersions.jsBom}"))
-                }
-            }
-
-            sourceSets["test"].apply {
-                dependencies {
-                    implementation(kotlin("test-js"))
-                }
-            }
-
-            if (explicitApi == null) explicitApiWarning()
-        }
-
-        (tasks.findByName("processResources") as? Copy)?.apply {
-            fromJsDependencies("runtimeClasspath")
-        }
-
-
-        // apply dokka for all projects
-        if (!plugins.hasPlugin("org.jetbrains.dokka")) {
-            apply<DokkaPlugin>()
-        }
-    }
-}

src/main/kotlin/space/kscience/gradle/KScienceJVMPlugin.kt

@@ -10,23 +10,27 @@ import org.gradle.kotlin.dsl.get
 import org.gradle.kotlin.dsl.withType
 import org.jetbrains.dokka.gradle.DokkaPlugin
 import org.jetbrains.kotlin.gradle.dsl.KotlinJvmProjectExtension
-import org.jetbrains.kotlin.gradle.tasks.KotlinCompile
 import space.kscience.gradle.internal.applySettings
 import space.kscience.gradle.internal.defaultKotlinJvmArgs
 
 public open class KScienceJVMPlugin : Plugin<Project> {
     override fun apply(project: Project): Unit = project.run {
+
+        logger.warn("KSCience JVM plugin is deprecated. Use MPP.")
         if (!plugins.hasPlugin("org.jetbrains.kotlin.jvm")) {
             plugins.apply("org.jetbrains.kotlin.jvm")
         } else {
             logger.info("Kotlin JVM plugin is already present")
         }
-        val extension = registerKScienceExtension(::KScienceExtension)
+        val extension = registerKScienceExtension<KScienceExtension>()
 
         //logger.info("Applying KScience configuration for JVM project")
         configure<KotlinJvmProjectExtension> {
             sourceSets.all {
                 languageSettings.applySettings()
+                compilerOptions{
+                    freeCompilerArgs.addAll(defaultKotlinJvmArgs)
+                }
             }
 
             sourceSets["test"].apply {
@@ -42,12 +46,6 @@ public open class KScienceJVMPlugin : Plugin<Project> {
             }
         }
 
-        tasks.withType<KotlinCompile> {
-            kotlinOptions {
-                freeCompilerArgs = freeCompilerArgs + defaultKotlinJvmArgs
-            }
-        }
-
         tasks.withType<Test> {
             useJUnitPlatform()
         }

src/main/kotlin/space/kscience/gradle/KScienceMPPlugin.kt

@@ -4,45 +4,54 @@ import org.gradle.api.Plugin
 import org.gradle.api.Project
 import org.gradle.kotlin.dsl.apply
 import org.gradle.kotlin.dsl.configure
-import org.gradle.kotlin.dsl.hasPlugin
 import org.gradle.kotlin.dsl.invoke
 import org.jetbrains.dokka.gradle.DokkaPlugin
+import org.jetbrains.kotlin.gradle.ExperimentalKotlinGradlePluginApi
 import org.jetbrains.kotlin.gradle.dsl.KotlinMultiplatformExtension
-import org.jetbrains.kotlin.gradle.plugin.mpp.KotlinMultiplatformPlugin
 import space.kscience.gradle.internal.applySettings
+import space.kscience.gradle.internal.defaultKotlinCommonArgs
 
 public open class KScienceMPPlugin : Plugin<Project> {
+
     override fun apply(project: Project): Unit = project.run {
-        if (!plugins.hasPlugin(KotlinMultiplatformPlugin::class)) {
+        if (!plugins.hasPlugin("org.jetbrains.kotlin.multiplatform")) {
             //apply<KotlinMultiplatformPlugin>() for some reason it does not work
             plugins.apply("org.jetbrains.kotlin.multiplatform")
         } else {
             logger.info("Kotlin MPP plugin is already present")
         }
 
-        registerKScienceExtension(::KScienceMppExtension)
+        val kscience = registerKScienceExtension<KScienceMppExtension>()
 
         configure<KotlinMultiplatformExtension> {
-
             sourceSets {
-                getByName("commonMain"){
+                getByName("commonMain") {
                     dependencies {
                         api(project.dependencies.platform("org.jetbrains.kotlin-wrappers:kotlin-wrappers-bom:${KScienceVersions.jsBom}"))
                     }
                 }
-                getByName("commonTest"){
+                getByName("commonTest") {
                     dependencies {
-                        implementation(kotlin("test-common"))
+                        implementation(kotlin("test"))
                         implementation(kotlin("test-annotations-common"))
                     }
                 }
-            }
-
-            sourceSets.all {
+                all {
                     languageSettings.applySettings()
                 }
+            }
+            @OptIn(ExperimentalKotlinGradlePluginApi::class)
+            compilerOptions{
+                freeCompilerArgs.addAll(defaultKotlinCommonArgs)
+            }
 
             if (explicitApi == null) explicitApiWarning()
+
+            //pass compose extension inside kscience extensions to make it available inside kscience block
+            plugins.withId("org.jetbrains.compose"){
+                kscience.extensions.add("compose", (this@configure as org.gradle.api.plugins.ExtensionAware).extensions.getByName("compose"))
+            }
+
         }
 
 

src/main/kotlin/space/kscience/gradle/KScienceProjectPlugin.kt

@@ -12,7 +12,12 @@ import org.jetbrains.changelog.ChangelogPlugin
 import org.jetbrains.changelog.ChangelogPluginExtension
 import org.jetbrains.dokka.gradle.AbstractDokkaTask
 import org.jetbrains.dokka.gradle.DokkaPlugin
-import space.kscience.gradle.internal.*
+import org.jetbrains.kotlin.gradle.targets.js.yarn.YarnLockMismatchReport
+import org.jetbrains.kotlin.gradle.targets.js.yarn.YarnPlugin
+import org.jetbrains.kotlin.gradle.targets.js.yarn.YarnRootExtension
+import space.kscience.gradle.internal.addPublishing
+import space.kscience.gradle.internal.addSonatypePublishing
+import space.kscience.gradle.internal.setupPublication
 
 /**
  * Simplifies adding repositories for Maven publishing, responds for releasing tasks for projects.
@@ -51,46 +56,24 @@ public class KSciencePublishingExtension(public val project: Project) {
     }
 
     /**
-     * Adds GitHub as VCS and adds GitHub Packages Maven repository to publishing.
-     *
-     * @param githubProject the GitHub project.
-     * @param githubOrg the GitHub user or organization.
-     * @param deploy publish packages in the `deploy` task to the GitHub repository.
+     * Add a repository with [repositoryName]. Uses "publishing.$repositoryName.user" and "publishing.$repositoryName.token"
+     * properties pattern to store user and token
      */
-    public fun github(
-        githubOrg: String,
-        githubProject: String,
-        deploy: Boolean = project.requestPropertyOrNull("publishing.github") == "true",
+    public fun repository(
+        repositoryName: String,
+        url: String,
     ) {
-        if (deploy) {
-            try {
-                project.addGithubPublishing(githubOrg, githubProject)
-            } catch (t: Throwable) {
-                project.logger.error("Failed to set up github publication", t)
-            }
-        }
-    }
-
-    /**
-     * Adds Space Packages Maven repository to publishing.
-     *
-     * @param spaceRepo the repository URL.
-     * @param deploy publish packages in the `deploy` task to the Space repository.
-     */
-    public fun space(
-        spaceRepo: String,
-    ) {
-        project.addSpacePublishing(spaceRepo)
+        require(isVcsInitialized) { "The project vcs is not set up use 'pom' method to do so" }
+        project.addPublishing(repositoryName, url)
     }
 
     /**
      * Adds Sonatype Maven repository to publishing.
-     *
-     * @param addToRelease  publish packages in the `release` task to the Sonatype repository.
+
      */
-    public fun sonatype() {
+    public fun sonatype(sonatypeRoot: String = "https://s01.oss.sonatype.org") {
         require(isVcsInitialized) { "The project vcs is not set up use 'pom' method to do so" }
-        project.addSonatypePublishing()
+        project.addSonatypePublishing(sonatypeRoot)
     }
 }
 
@@ -104,11 +87,11 @@ public open class KScienceProjectPlugin : Plugin<Project> {
         apply<DokkaPlugin>()
         apply<BinaryCompatibilityValidatorPlugin>()
 
-        allprojects{
-            repositories{
+        allprojects {
+            repositories {
                 mavenCentral()
                 maven("https://repo.kotlin.link")
-                maven("https://maven.pkg.jetbrains.space/spc/p/sci/dev")
+                google()
             }
 
             // Workaround for https://github.com/gradle/gradle/issues/15568
@@ -139,11 +122,12 @@ public open class KScienceProjectPlugin : Plugin<Project> {
             val readmeExtension = KScienceReadmeExtension(this)
             extensions.add("readme", readmeExtension)
 
-            @Suppress("UNUSED_VARIABLE")
-            val generateReadme by tasks.creating {
+            tasks.create("generateReadme") {
                 group = "documentation"
                 description = "Generate a README file if stub is present"
 
+                inputs.property("extension", readmeExtension)
+
                 if (readmeExtension.readmeTemplate.exists()) {
                     inputs.file(readmeExtension.readmeTemplate)
                 }
@@ -179,6 +163,8 @@ public open class KScienceProjectPlugin : Plugin<Project> {
                 }
             }
 
+            inputs.property("extension", rootReadmeExtension)
+
             if (rootReadmeExtension.readmeTemplate.exists()) {
                 inputs.file(rootReadmeExtension.readmeTemplate)
             }
@@ -206,7 +192,7 @@ public open class KScienceProjectPlugin : Plugin<Project> {
                             subproject.extensions.findByType<KScienceReadmeExtension>()?.let { ext ->
                                 val path = subproject.path.replaceFirst(":", "").replace(":", "/")
                                 appendLine("\n### [$path]($path)")
-                                appendLine("> ${ext.description}")
+                                ext.description?.let { appendLine("> ${ext.description}") }
                                 appendLine(">\n> **Maturity**: ${ext.maturity}")
                                 val featureString = ext.featuresString(itemPrefix = "> - ", pathPrefix = "$path/")
                                 if (featureString.isNotBlank()) {
@@ -233,12 +219,12 @@ public open class KScienceProjectPlugin : Plugin<Project> {
 
         tasks.create("version") {
             group = "publishing"
-            val versionFile = project.buildDir.resolve("project-version.txt")
-            outputs.file(versionFile)
+            val versionFileProvider = project.layout.buildDirectory.file("project-version.txt")
+            outputs.file(versionFileProvider)
             doLast {
+                val versionFile = versionFileProvider.get().asFile
                 versionFile.createNewFile()
                 versionFile.writeText(project.version.toString())
-                println(project.version)
             }
         }
 
@@ -250,9 +236,11 @@ public open class KScienceProjectPlugin : Plugin<Project> {
             }
         }
 
-        plugins.withType(org.jetbrains.kotlin.gradle.targets.js.yarn.YarnPlugin::class.java) {
-            rootProject.the<org.jetbrains.kotlin.gradle.targets.js.yarn.YarnRootExtension>().lockFileDirectory =
-                rootDir.resolve("gradle")
+        plugins.withType<YarnPlugin>() {
+            rootProject.configure<YarnRootExtension> {
+                lockFileDirectory = rootDir.resolve("gradle")
+                yarnLockMismatchReport = YarnLockMismatchReport.WARNING
+            }
         }
     }
 

src/main/kotlin/space/kscience/gradle/KScienceReadmeExtension.kt

@@ -10,6 +10,7 @@ import kotlinx.html.stream.createHTML
 import kotlinx.validation.ApiValidationExtension
 import org.gradle.api.Project
 import org.gradle.kotlin.dsl.findByType
+import org.intellij.lang.annotations.Language
 import java.io.File
 import java.io.StringWriter
 import kotlin.collections.component1
@@ -32,7 +33,8 @@ private fun Template.processToString(args: Map<String, Any?>): String {
 
 
 public class KScienceReadmeExtension(public val project: Project) {
-    public var description: String = project.description ?: ""
+    public var description: String? = null
+        get() = field ?: project.description
 
     public var maturity: Maturity = Maturity.EXPERIMENTAL
         set(value) {
@@ -88,12 +90,23 @@ public class KScienceReadmeExtension(public val project: Project) {
 
     public data class Feature(val id: String, val description: String, val ref: String?, val name: String = id)
 
-    public val features: MutableList<Feature> = ArrayList()
+    public val features: MutableList<Feature> = mutableListOf()
 
-    public fun feature(id: String, ref: String? = null, name: String = id, description: () -> String) {
+    /**
+     * A plain readme feature with description
+     */
+    public fun feature(
+        id: String,
+        @Language("File") ref: String? = null,
+        name: String = id,
+        description: () -> String,
+    ) {
         features += Feature(id, description(), ref, name)
     }
 
+    /**
+     * A readme feature with HTML description
+     */
     public fun featureWithHtml(
         id: String,
         ref: String? = null,
@@ -177,4 +190,38 @@ public class KScienceReadmeExtension(public val project: Project) {
         project.logger.warn("Template with name ${ex.templateName} not found in ${project.name}")
         null
     }
+
+    override fun equals(other: Any?): Boolean {
+        if (this === other) return true
+        if (javaClass != other?.javaClass) return false
+
+        other as KScienceReadmeExtension
+
+        if (project != other.project) return false
+        if (maturity != other.maturity) return false
+        if (useDefaultReadmeTemplate != other.useDefaultReadmeTemplate) return false
+        if (readmeTemplate != other.readmeTemplate) return false
+        if (fmLoader != other.fmLoader) return false
+        if (fmCfg != other.fmCfg) return false
+        if (features != other.features) return false
+        if (properties != other.properties) return false
+        if (inputFiles != other.inputFiles) return false
+
+        return true
+    }
+
+    override fun hashCode(): Int {
+        var result = project.hashCode()
+        result = 31 * result + maturity.hashCode()
+        result = 31 * result + useDefaultReadmeTemplate.hashCode()
+        result = 31 * result + readmeTemplate.hashCode()
+        result = 31 * result + fmLoader.hashCode()
+        result = 31 * result + fmCfg.hashCode()
+        result = 31 * result + features.hashCode()
+        result = 31 * result + properties.hashCode()
+        result = 31 * result + inputFiles.hashCode()
+        return result
+    }
+
+
 }

src/main/kotlin/space/kscience/gradle/internal/common.kt

@@ -7,8 +7,13 @@ import org.jetbrains.kotlin.gradle.plugin.LanguageSettingsBuilder
 import space.kscience.gradle.KScienceVersions
 
 
-internal val defaultKotlinJvmArgs: List<String> =
-    listOf("-Xjvm-default=all", "-Xlambdas=indy"/* "-Xjdk-release=${KScienceVersions.JVM_TARGET}"*/)
+internal val defaultKotlinJvmArgs: List<String> = listOf(
+    "-Xjvm-default=all"
+)
+
+internal val defaultKotlinCommonArgs: List<String> = listOf(
+    "-Xexpect-actual-classes"
+)
 
 internal fun resolveKotlinVersion(): KotlinVersion {
     val (major, minor, patch) = KScienceVersions.kotlinVersion.split(".", "-")
@@ -23,6 +28,7 @@ internal fun LanguageSettingsBuilder.applySettings(
     apiVersion = versionString
     progressiveMode = true
 
+
     optIn("kotlin.RequiresOptIn")
     optIn("kotlin.ExperimentalUnsignedTypes")
     optIn("kotlin.ExperimentalStdlibApi")

src/main/kotlin/space/kscience/gradle/internal/publishing.kt

@@ -8,9 +8,7 @@ import org.gradle.api.tasks.bundling.Jar
 import org.gradle.kotlin.dsl.*
 import org.gradle.plugins.signing.SigningExtension
 import org.gradle.plugins.signing.SigningPlugin
-import org.jetbrains.kotlin.gradle.dsl.KotlinJsProjectExtension
 import org.jetbrains.kotlin.gradle.dsl.KotlinJvmProjectExtension
-import org.jetbrains.kotlin.gradle.plugin.mpp.pm20.util.targets
 import space.kscience.gradle.isInDevelopment
 
 internal fun Project.requestPropertyOrNull(propertyName: String): String? = findProperty(propertyName) as? String
@@ -24,26 +22,6 @@ internal fun Project.setupPublication(mavenPomConfiguration: MavenPom.() -> Unit
     plugins.withId("maven-publish") {
         configure<PublishingExtension> {
 
-            plugins.withId("org.jetbrains.kotlin.js") {
-                val kotlin: KotlinJsProjectExtension = extensions.findByType()!!
-
-                val sourcesJar by tasks.creating(Jar::class) {
-                    archiveClassifier.set("sources")
-                    kotlin.sourceSets.forEach {
-                        from(it.kotlin)
-                    }
-                }
-
-                publications.create<MavenPublication>("js") {
-                    kotlin.targets.flatMap { it.components }.forEach {
-                        from(it)
-                    }
-
-                    artifact(sourcesJar)
-                }
-
-            }
-
             plugins.withId("org.jetbrains.kotlin.jvm") {
                 val kotlin = extensions.findByType<KotlinJvmProjectExtension>()!!
 
@@ -55,9 +33,7 @@ internal fun Project.setupPublication(mavenPomConfiguration: MavenPom.() -> Unit
                 }
 
                 publications.create<MavenPublication>("jvm") {
-                    kotlin.target.components.forEach {
-                        from(it)
-                    }
+                    from(project.components["java"])
 
                     artifact(sourcesJar)
                 }
@@ -100,7 +76,7 @@ internal fun Project.setupPublication(mavenPomConfiguration: MavenPom.() -> Unit
                         val signingKey: String = requestProperty("publishing.signing.key")
                         val signingPassphrase: String = requestProperty("publishing.signing.passPhrase")
 
-                        // if key is provided, use it
+                        // if a key is provided, use it
                         useInMemoryPgpKeys(signingId, signingKey, signingPassphrase)
                     } // else use agent signing
                     sign(publications)
@@ -112,34 +88,31 @@ internal fun Project.setupPublication(mavenPomConfiguration: MavenPom.() -> Unit
     }
 }
 
-internal fun Project.addGithubPublishing(
-    githubOrg: String,
-    githubProject: String,
-) {
-    if (requestPropertyOrNull("publishing.enabled") != "true") {
-        logger.info("Skipping github publishing because publishing is disabled")
-        return
-    }
-    if (requestPropertyOrNull("publishing.github") != "false") {
-        logger.info("Skipping github publishing  because `publishing.github != true`")
-        return
-    }
+internal fun Project.addPublishing(
+    repositoryName: String,
+    urlString:String
+){
+    require(repositoryName.matches("\\w*".toRegex())){"Repository name must contain only letters or numbers"}
+    val user: String? = requestPropertyOrNull("publishing.$repositoryName.user")
+    val token: String? = requestPropertyOrNull("publishing.$repositoryName.token")
 
-    val githubUser: String = requestProperty("publishing.github.user")
-    val githubToken: String = requestProperty("publishing.github.token")
+    if (user == null || token == null) {
+        logger.info("Skipping $repositoryName publishing because $repositoryName credentials are not defined")
+        return
+    }
 
     allprojects {
         plugins.withId("maven-publish") {
             configure<PublishingExtension> {
-                logger.info("Adding github publishing to project [${project.name}]")
+                logger.info("Adding $repositoryName publishing to project [${project.name}]")
 
                 repositories.maven {
-                    name = "github"
-                    url = uri("https://maven.pkg.github.com/$githubOrg/$githubProject/")
+                    name = repositoryName
+                    url = uri(urlString)
 
                     credentials {
-                        username = githubUser
-                        password = githubToken
+                        username = user
+                        password = token
                     }
                 }
             }
@@ -147,72 +120,11 @@ internal fun Project.addGithubPublishing(
     }
 }
 
-internal fun Project.addSpacePublishing(spaceRepo: String) {
-    if (requestPropertyOrNull("publishing.enabled") != "true") {
-        logger.info("Skipping space publishing because publishing is disabled")
-        return
-    }
-
-    if (requestPropertyOrNull("publishing.space") == "false") {
-        logger.info("Skipping space publishing because `publishing.space == false`")
-        return
-    }
-
-    val spaceUser: String = requestProperty("publishing.space.user")
-    val spaceToken: String = requestProperty("publishing.space.token")
-
-    allprojects {
-        plugins.withId("maven-publish") {
-            configure<PublishingExtension> {
-                project.logger.info("Adding mipt-npm Space publishing to project [${project.name}]")
-
-                repositories.maven {
-                    name = "space"
-                    url = uri(spaceRepo)
-
-                    credentials {
-                        username = spaceUser
-                        password = spaceToken
-                    }
-                }
-            }
-        }
-    }
-}
-
-internal fun Project.addSonatypePublishing() {
-    if (requestPropertyOrNull("publishing.enabled") != "true") {
-        logger.info("Skipping sonatype publishing because publishing is disabled")
-        return
-    }
 
+internal fun Project.addSonatypePublishing(sonatypeRoot: String) {
     if (isInDevelopment) {
         logger.info("Sonatype publishing skipped for development version")
-        return
-    }
-
-    if (requestPropertyOrNull("publishing.sonatype") == "false") {
-        logger.info("Skipping sonatype publishing because `publishing.sonatype == false`")
-        return
-    }
-
-    val sonatypeUser: String = requestProperty("publishing.sonatype.user")
-    val sonatypePassword: String = requestProperty("publishing.sonatype.password")
-
-    allprojects {
-        plugins.withId("maven-publish") {
-            configure<PublishingExtension> {
-                repositories.maven {
-                    val sonatypeRepo = "https://s01.oss.sonatype.org/service/local/staging/deploy/maven2"
-                    name = "sonatype"
-                    url = uri(sonatypeRepo)
-
-                    credentials {
-                        username = sonatypeUser
-                        password = sonatypePassword
-                    }
-                }
-            }
-        }
+    } else {
+        addPublishing("sonatype", "$sonatypeRoot/service/local/staging/deploy/maven2")
     }
 }

src/main/kotlin/space/kscience/gradle/pomConfig.kt

@@ -17,7 +17,7 @@ public fun MavenPom.useSPCTeam(){
         developer {
             id.set("SPC")
             name.set("Scientific programming centre")
-            organization.set("MIPT")
+            organization.set("SPC")
             organizationUrl.set("https://sciprog.center/")
         }
     }

src/main/resources/templates/ARTIFACT-TEMPLATE.md

@@ -2,17 +2,6 @@
 
 The Maven coordinates of this project are `${group}:${name}:${version}`.
 
-**Gradle Groovy:**
-```groovy
-repositories {
-    maven { url 'https://repo.kotlin.link' }
-    mavenCentral()
-}
-
-dependencies {
-    implementation '${group}:${name}:${version}'
-}
-```
 **Gradle Kotlin DSL:**
 ```kotlin
 repositories {