v0.8.2 #80
@ -1,9 +1,11 @@
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package space.kscience.dataforge.actions
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import kotlinx.coroutines.CoroutineScope
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import kotlinx.coroutines.flow.launchIn
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import kotlinx.coroutines.flow.onEach
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import kotlinx.coroutines.launch
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import space.kscience.dataforge.data.*
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import space.kscience.dataforge.meta.Meta
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import space.kscience.dataforge.misc.DFInternal
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import space.kscience.dataforge.names.Name
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import space.kscience.dataforge.names.startsWith
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import kotlin.reflect.KType
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@ -33,26 +35,38 @@ public abstract class AbstractAction<T : Any, R : Any>(
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/**
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* Update part of the data set using provided data
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*
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* @param source the source data tree in case we need several data items to update
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*/
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protected open fun DataSink<R>.update(
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allData: DataTree<T>,
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source: DataTree<T>,
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meta: Meta,
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namedData: NamedData<T>,
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){
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//by default regenerate the whole data set
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generate(allData,meta)
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generate(source,meta)
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}
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@OptIn(DFInternal::class)
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override fun execute(
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scope: CoroutineScope,
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dataSet: DataTree<T>,
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meta: Meta,
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): ObservableDataTree<R> = MutableDataTree<R>(outputType, scope).apply {
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generate(dataSet, meta)
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scope.launch {
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dataSet.updates().collect {
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): DataTree<R> = if(dataSet.isObservable()) {
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MutableDataTree<R>(outputType, dataSet.updatesScope).apply {
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generate(dataSet, meta)
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dataSet.updates().onEach {
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update(dataSet, meta, it)
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}.launchIn(updatesScope)
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//close updates when the source is closed
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updatesScope.launch {
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dataSet.awaitClose()
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close()
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}
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}
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} else{
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DataTree(outputType){
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generate(dataSet, meta)
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}
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}
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}
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@ -1,9 +1,6 @@
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package space.kscience.dataforge.actions
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import kotlinx.coroutines.CoroutineScope
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import kotlinx.coroutines.coroutineScope
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import space.kscience.dataforge.data.DataTree
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import space.kscience.dataforge.data.ObservableDataTree
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import space.kscience.dataforge.meta.Meta
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import space.kscience.dataforge.misc.DFExperimental
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@ -16,7 +13,7 @@ public fun interface Action<T, R> {
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* Transform the data in the node, producing a new node. By default, it is assumed that all calculations are lazy
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* so not actual computation is started at this moment.
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*/
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public fun execute(scope: CoroutineScope, dataSet: DataTree<T>, meta: Meta): ObservableDataTree<R>
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public fun execute(dataSet: DataTree<T>, meta: Meta): DataTree<R>
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public companion object
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}
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@ -26,20 +23,21 @@ public fun interface Action<T, R> {
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*/
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public fun <T, R> DataTree<T>.transform(
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action: Action<T, R>,
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scope: CoroutineScope,
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meta: Meta = Meta.EMPTY,
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): DataTree<R> = action.execute(scope, this, meta)
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): DataTree<R> = action.execute(this, meta)
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/**
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* Action composition. The result is terminal if one of its parts is terminal
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*/
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public infix fun <T , I, R> Action<T, I>.then(action: Action<I, R>): Action<T, R> =
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Action { scope, dataSet, meta -> action.execute(scope, this@then.execute(scope, dataSet, meta), meta) }
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public infix fun <T, I, R> Action<T, I>.then(action: Action<I, R>): Action<T, R> = Action { dataSet, meta ->
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action.execute(this@then.execute(dataSet, meta), meta)
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}
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@DFExperimental
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public suspend operator fun <T, R> Action<T, R>.invoke(
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public operator fun <T, R> Action<T, R>.invoke(
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dataSet: DataTree<T>,
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meta: Meta = Meta.EMPTY,
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): DataTree<R> = coroutineScope { execute(this, dataSet, meta) }
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): DataTree<R> = execute(dataSet, meta)
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@ -79,14 +79,14 @@ internal class MapAction<T : Any, R : Any>(
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builder.result(env, data.await())
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}
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//setting the data node
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data(newName, newData)
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put(newName, newData)
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}
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override fun DataSink<R>.generate(data: DataTree<T>, meta: Meta) {
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data.forEach { mapOne(it.name, it.data, meta) }
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}
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override fun DataSink<R>.update(allData: DataTree<T>, meta: Meta, namedData: NamedData<T>) {
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override fun DataSink<R>.update(source: DataTree<T>, meta: Meta, namedData: NamedData<T>) {
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mapOne(namedData.name, namedData.data, namedData.meta)
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}
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}
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|
@ -103,7 +103,7 @@ internal class ReduceAction<T : Any, R : Any>(
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meta = groupMeta
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) { group.result.invoke(env, it) }
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data(env.name, res)
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put(env.name, res)
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}
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}
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}
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@ -64,7 +64,7 @@ internal class SplitAction<T : Any, R : Any>(
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).apply(rule)
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//data.map<R>(outputType, meta = env.meta) { env.result(it) }.named(fragmentName)
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data(
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put(
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fragmentName,
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@Suppress("OPT_IN_USAGE") Data(outputType, meta = env.meta, dependencies = listOf(data)) {
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env.result(data.await())
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@ -77,7 +77,7 @@ internal class SplitAction<T : Any, R : Any>(
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data.forEach { splitOne(it.name, it.data, meta) }
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}
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override fun DataSink<R>.update(allData: DataTree<T>, meta: Meta, namedData: NamedData<T>) {
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override fun DataSink<R>.update(source: DataTree<T>, meta: Meta, namedData: NamedData<T>) {
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splitOne(namedData.name, namedData.data, namedData.meta)
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}
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}
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@ -1,11 +1,11 @@
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package space.kscience.dataforge.data
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import kotlinx.coroutines.CoroutineScope
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import kotlinx.coroutines.*
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import kotlinx.coroutines.flow.*
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import kotlinx.coroutines.launch
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import space.kscience.dataforge.meta.Meta
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import space.kscience.dataforge.misc.DFInternal
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import space.kscience.dataforge.names.*
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import kotlin.contracts.contract
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import kotlin.reflect.KType
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import kotlin.reflect.typeOf
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@ -66,7 +66,7 @@ public interface GenericDataTree<out T, out TR : GenericDataTree<T, TR>> : DataS
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}
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}
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public typealias DataTree<T> = GenericDataTree<T, GenericDataTree<T,*>>
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public typealias DataTree<T> = GenericDataTree<T, GenericDataTree<T, *>>
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/**
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* Return a single data in this tree. Throw error if it is not single.
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@ -87,7 +87,7 @@ public operator fun <T> DataTree<T>.get(name: String): Data<T>? = read(name.pars
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public fun <T> DataTree<T>.asSequence(
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namePrefix: Name = Name.EMPTY,
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): Sequence<NamedData<T>> = sequence {
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data?.let { yield(it.named(Name.EMPTY)) }
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data?.let { yield(it.named(namePrefix)) }
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items.forEach { (token, tree) ->
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yieldAll(tree.asSequence(namePrefix + token))
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}
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@ -113,8 +113,8 @@ public fun GenericDataTree<*, *>.isEmpty(): Boolean = data == null && items.isEm
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@PublishedApi
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internal class FlatDataTree<T>(
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override val dataType: KType,
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val dataSet: Map<Name, Data<T>>,
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val prefix: Name,
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private val dataSet: Map<Name, Data<T>>,
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private val prefix: Name,
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) : GenericDataTree<T, FlatDataTree<T>> {
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override val self: FlatDataTree<T> get() = this
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override val data: Data<T>? get() = dataSet[prefix]
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@ -141,20 +141,56 @@ internal fun <T> Sequence<NamedData<T>>.toTree(type: KType): DataTree<T> =
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public inline fun <reified T> Sequence<NamedData<T>>.toTree(): DataTree<T> =
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FlatDataTree(typeOf<T>(), associate { it.name to it.data }, Name.EMPTY)
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public interface GenericObservableDataTree<out T, out TR : GenericObservableDataTree<T, TR>> : GenericDataTree<T, TR>,
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ObservableDataSource<T>
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public interface GenericObservableDataTree<out T, out TR : GenericObservableDataTree<T, TR>> :
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GenericDataTree<T, TR>, ObservableDataSource<T>, AutoCloseable {
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/**
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* A scope that is used to propagate updates. When this scope is closed, no new updates could arrive.
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*/
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public val updatesScope: CoroutineScope
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/**
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* Close this data tree updates channel
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*/
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override fun close() {
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updatesScope.cancel()
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}
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}
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public typealias ObservableDataTree<T> = GenericObservableDataTree<T, GenericObservableDataTree<T, *>>
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public fun <T> DataTree<T>.updates(): Flow<NamedData<T>> = if (this is GenericObservableDataTree<T,*>) updates() else emptyFlow()
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public fun interface DataSink<in T> {
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public fun data(name: Name, data: Data<T>?)
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/**
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* Check if the [DataTree] is observable
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*/
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public fun <T> DataTree<T>.isObservable(): Boolean {
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contract {
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returns(true) implies (this@isObservable is GenericObservableDataTree<T, *>)
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}
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return this is GenericObservableDataTree<T, *>
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}
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/**
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* Wait for this data tree to stop spawning updates (updatesScope is closed).
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* If this [DataTree] is not observable, return immediately.
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*/
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public suspend fun <T> DataTree<T>.awaitClose() {
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if (isObservable()) {
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updatesScope.coroutineContext[Job]?.join()
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}
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}
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public fun <T> DataTree<T>.updates(): Flow<NamedData<T>> =
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if (this is GenericObservableDataTree<T, *>) updates() else emptyFlow()
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public fun interface DataSink<in T> {
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public fun put(name: Name, data: Data<T>?)
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}
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@DFInternal
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public class DataTreeBuilder<T>(private val type: KType) : DataSink<T> {
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private val map = HashMap<Name, Data<T>>()
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override fun data(name: Name, data: Data<T>?) {
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override fun put(name: Name, data: Data<T>?) {
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if (data == null) {
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map.remove(name)
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} else {
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@ -174,6 +210,7 @@ public inline fun <T> DataTree(
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/**
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* Create and a data tree.
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*/
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@OptIn(DFInternal::class)
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public inline fun <reified T> DataTree(
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generator: DataSink<T>.() -> Unit,
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): DataTree<T> = DataTreeBuilder<T>(typeOf<T>()).apply(generator).build()
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@ -182,77 +219,88 @@ public inline fun <reified T> DataTree(
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* A mutable version of [GenericDataTree]
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*/
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public interface MutableDataTree<T> : GenericObservableDataTree<T, MutableDataTree<T>>, DataSink<T> {
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public val scope: CoroutineScope
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override var data: Data<T>?
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override val items: Map<NameToken, MutableDataTree<T>>
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public fun getOrCreateItem(token: NameToken): MutableDataTree<T>
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public operator fun set(token: NameToken, data: Data<T>?)
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override fun data(name: Name, data: Data<T>?): Unit = set(name, data)
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override fun put(name: Name, data: Data<T>?): Unit = set(name, data)
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}
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public tailrec operator fun <T> MutableDataTree<T>.set(name: Name, data: Data<T>?): Unit {
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when (name.length) {
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0 -> this.data = data
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1 -> set(name.first(), data)
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else -> items[name.first()]?.set(name.cutFirst(), data)
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else -> getOrCreateItem(name.first())[name.cutFirst()] = data
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}
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}
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private class ObservableMutableDataTreeImpl<T>(
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private class MutableDataTreeImpl<T>(
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override val dataType: KType,
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override val scope: CoroutineScope,
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override val updatesScope: CoroutineScope,
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) : MutableDataTree<T> {
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private val updates = MutableSharedFlow<NamedData<T>>()
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private val children = HashMap<NameToken, MutableDataTree<T>>()
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override var data: Data<T>? = null
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set(value) {
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if (!updatesScope.isActive) error("Can't send updates to closed MutableDataTree")
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field = value
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if (value != null) {
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scope.launch {
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updatesScope.launch {
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updates.emit(value.named(Name.EMPTY))
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}
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}
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}
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override val items: Map<NameToken, MutableDataTree<T>> get() = children
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override fun getOrCreateItem(token: NameToken): MutableDataTree<T> = children.getOrPut(token){
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MutableDataTreeImpl(dataType, updatesScope)
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}
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override val self: MutableDataTree<T> get() = this
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override fun set(token: NameToken, data: Data<T>?) {
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children.getOrPut(token) {
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ObservableMutableDataTreeImpl<T>(dataType, scope).also { subTree ->
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subTree.updates().onEach {
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updates.emit(it.named(token + it.name))
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}.launchIn(scope)
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}
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}.data = data
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if (!updatesScope.isActive) error("Can't send updates to closed MutableDataTree")
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val subTree = getOrCreateItem(token)
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subTree.updates().onEach {
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updates.emit(it.named(token + it.name))
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}.launchIn(updatesScope)
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subTree.data = data
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}
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override fun updates(): Flow<NamedData<T>> = flow {
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//emit this node updates
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updates.collect {
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emit(it)
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}
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}
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override fun updates(): Flow<NamedData<T>> = updates
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}
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/**
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* Create a new [MutableDataTree]
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*
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* @param parentScope a [CoroutineScope] to control data propagation. By default uses [GlobalScope]
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*/
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@OptIn(DelicateCoroutinesApi::class)
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public fun <T> MutableDataTree(
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type: KType,
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scope: CoroutineScope
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): MutableDataTree<T> = ObservableMutableDataTreeImpl<T>(type, scope)
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parentScope: CoroutineScope = GlobalScope,
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): MutableDataTree<T> = MutableDataTreeImpl<T>(
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type,
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CoroutineScope(parentScope.coroutineContext + Job(parentScope.coroutineContext[Job]))
|
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)
|
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|
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/**
|
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* Create and initialize a observable mutable data tree.
|
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*/
|
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@OptIn(DelicateCoroutinesApi::class)
|
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public inline fun <reified T> MutableDataTree(
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scope: CoroutineScope,
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parentScope: CoroutineScope = GlobalScope,
|
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generator: MutableDataTree<T>.() -> Unit = {},
|
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): MutableDataTree<T> = MutableDataTree<T>(typeOf<T>(), scope).apply { generator() }
|
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): MutableDataTree<T> = MutableDataTree<T>(typeOf<T>(), parentScope).apply { generator() }
|
||||
|
||||
//@DFInternal
|
||||
//public fun <T> ObservableDataTree(
|
||||
@ -262,18 +310,21 @@ public inline fun <reified T> MutableDataTree(
|
||||
//): ObservableDataTree<T> = MutableDataTree<T>(type, scope.coroutineContext).apply(generator)
|
||||
|
||||
public inline fun <reified T> ObservableDataTree(
|
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scope: CoroutineScope,
|
||||
parentScope: CoroutineScope,
|
||||
generator: MutableDataTree<T>.() -> Unit = {},
|
||||
): ObservableDataTree<T> = MutableDataTree<T>(typeOf<T>(), scope).apply(generator)
|
||||
): ObservableDataTree<T> = MutableDataTree<T>(typeOf<T>(), parentScope).apply(generator)
|
||||
|
||||
|
||||
/**
|
||||
* Collect a [Sequence] into an observable tree with additional [updates]
|
||||
*/
|
||||
public fun <T> Sequence<NamedData<T>>.toObservableTree(dataType: KType, scope: CoroutineScope, updates: Flow<NamedData<T>>): ObservableDataTree<T> =
|
||||
MutableDataTree<T>(dataType, scope).apply {
|
||||
emitAll(this@toObservableTree)
|
||||
updates.onEach {
|
||||
data(it.name, it.data)
|
||||
}.launchIn(scope)
|
||||
}
|
||||
public fun <T> Sequence<NamedData<T>>.toObservableTree(
|
||||
dataType: KType,
|
||||
parentScope: CoroutineScope,
|
||||
updates: Flow<NamedData<T>>,
|
||||
): ObservableDataTree<T> = MutableDataTree<T>(dataType, parentScope).apply {
|
||||
this.putAll(this@toObservableTree)
|
||||
updates.onEach {
|
||||
put(it.name, it.data)
|
||||
}.launchIn(updatesScope)
|
||||
}
|
||||
|
@ -17,6 +17,7 @@ package space.kscience.dataforge.data
|
||||
|
||||
import space.kscience.dataforge.meta.get
|
||||
import space.kscience.dataforge.meta.string
|
||||
import space.kscience.dataforge.misc.DFInternal
|
||||
|
||||
public interface GroupRule {
|
||||
public fun <T : Any> gather(set: DataTree<T>): Map<String, DataTree<T>>
|
||||
@ -30,6 +31,7 @@ public interface GroupRule {
|
||||
* @param defaultTagValue
|
||||
* @return
|
||||
*/
|
||||
@OptIn(DFInternal::class)
|
||||
public fun byMetaValue(
|
||||
key: String,
|
||||
defaultTagValue: String,
|
||||
@ -42,7 +44,7 @@ public interface GroupRule {
|
||||
|
||||
set.forEach { data ->
|
||||
val tagValue: String = data.meta[key]?.string ?: defaultTagValue
|
||||
map.getOrPut(tagValue) { DataTreeBuilder(set.dataType) }.data(data.name,data.data)
|
||||
map.getOrPut(tagValue) { DataTreeBuilder(set.dataType) }.put(data.name, data.data)
|
||||
}
|
||||
|
||||
|
||||
|
@ -12,16 +12,12 @@ import space.kscience.dataforge.names.isEmpty
|
||||
import space.kscience.dataforge.names.plus
|
||||
|
||||
|
||||
public fun <T> DataSink<T>.data(value: NamedData<T>) {
|
||||
data(value.name, value.data)
|
||||
}
|
||||
|
||||
public fun <T> DataSink<T>.emitAll(sequence: Sequence<NamedData<T>>) {
|
||||
sequence.forEach { data(it) }
|
||||
public fun <T> DataSink<T>.put(value: NamedData<T>) {
|
||||
put(value.name, value.data)
|
||||
}
|
||||
|
||||
public fun <T> DataSink<T>.branch(dataTree: DataTree<T>) {
|
||||
emitAll(dataTree.asSequence())
|
||||
putAll(dataTree.asSequence())
|
||||
}
|
||||
|
||||
public inline fun <T> DataSink<T>.branch(
|
||||
@ -32,7 +28,7 @@ public inline fun <T> DataSink<T>.branch(
|
||||
apply(block)
|
||||
} else {
|
||||
val proxyDataSink = DataSink { nameWithoutPrefix, data ->
|
||||
this.data(prefix + nameWithoutPrefix, data)
|
||||
this.put(prefix + nameWithoutPrefix, data)
|
||||
}
|
||||
|
||||
proxyDataSink.apply(block)
|
||||
@ -45,69 +41,69 @@ public inline fun <T> DataSink<T>.branch(
|
||||
): Unit = branch(prefix.asName(), block)
|
||||
|
||||
|
||||
public fun <T> DataSink<T>.data(name: String, value: Data<T>) {
|
||||
data(Name.parse(name), value)
|
||||
public fun <T> DataSink<T>.put(name: String, value: Data<T>) {
|
||||
put(Name.parse(name), value)
|
||||
}
|
||||
|
||||
public fun <T> DataSink<T>.branch(name: Name, set: DataTree<T>) {
|
||||
branch(name) { emitAll(set.asSequence()) }
|
||||
branch(name) { putAll(set.asSequence()) }
|
||||
}
|
||||
|
||||
public fun <T> DataSink<T>.branch(name: String, set: DataTree<T>) {
|
||||
branch(Name.parse(name)) { emitAll(set.asSequence()) }
|
||||
branch(Name.parse(name)) { putAll(set.asSequence()) }
|
||||
}
|
||||
|
||||
/**
|
||||
* Produce lazy [Data] and emit it into the [MutableDataTree]
|
||||
*/
|
||||
public inline fun <reified T> DataSink<T>.data(
|
||||
public inline fun <reified T> DataSink<T>.put(
|
||||
name: String,
|
||||
meta: Meta = Meta.EMPTY,
|
||||
noinline producer: suspend () -> T,
|
||||
) {
|
||||
val data = Data(meta, block = producer)
|
||||
data(name, data)
|
||||
put(name, data)
|
||||
}
|
||||
|
||||
public inline fun <reified T> DataSink<T>.data(
|
||||
public inline fun <reified T> DataSink<T>.put(
|
||||
name: Name,
|
||||
meta: Meta = Meta.EMPTY,
|
||||
noinline producer: suspend () -> T,
|
||||
) {
|
||||
val data = Data(meta, block = producer)
|
||||
data(name, data)
|
||||
put(name, data)
|
||||
}
|
||||
|
||||
/**
|
||||
* Emit static data with the fixed value
|
||||
*/
|
||||
public inline fun <reified T> DataSink<T>.static(
|
||||
public inline fun <reified T> DataSink<T>.wrap(
|
||||
name: String,
|
||||
data: T,
|
||||
meta: Meta = Meta.EMPTY,
|
||||
): Unit = data(name, Data.static(data, meta))
|
||||
): Unit = put(name, Data.static(data, meta))
|
||||
|
||||
public inline fun <reified T> DataSink<T>.static(
|
||||
public inline fun <reified T> DataSink<T>.wrap(
|
||||
name: Name,
|
||||
data: T,
|
||||
meta: Meta = Meta.EMPTY,
|
||||
): Unit = data(name, Data.static(data, meta))
|
||||
): Unit = put(name, Data.static(data, meta))
|
||||
|
||||
public inline fun <reified T> DataSink<T>.static(
|
||||
public inline fun <reified T> DataSink<T>.wrap(
|
||||
name: String,
|
||||
data: T,
|
||||
mutableMeta: MutableMeta.() -> Unit,
|
||||
): Unit = data(Name.parse(name), Data.static(data, Meta(mutableMeta)))
|
||||
): Unit = put(Name.parse(name), Data.static(data, Meta(mutableMeta)))
|
||||
|
||||
|
||||
public fun <T> DataSink<T>.populateFrom(sequence: Sequence<NamedData<T>>) {
|
||||
public fun <T> DataSink<T>.putAll(sequence: Sequence<NamedData<T>>) {
|
||||
sequence.forEach {
|
||||
data(it.name, it.data)
|
||||
put(it.name, it.data)
|
||||
}
|
||||
}
|
||||
|
||||
public fun <T> DataSink<T>.populateFrom(tree: DataTree<T>) {
|
||||
populateFrom(tree.asSequence())
|
||||
public fun <T> DataSink<T>.putAll(tree: DataTree<T>) {
|
||||
this.putAll(tree.asSequence())
|
||||
}
|
||||
|
||||
|
||||
@ -115,13 +111,22 @@ public fun <T> DataSink<T>.populateFrom(tree: DataTree<T>) {
|
||||
* Update data with given node data and meta with node meta.
|
||||
*/
|
||||
@DFExperimental
|
||||
public fun <T> MutableDataTree<T>.populateFrom(flow: ObservableDataSource<T>): Job = flow.updates().onEach {
|
||||
//TODO check if the place is occupied
|
||||
data(it.name, it.data)
|
||||
}.launchIn(scope)
|
||||
public fun <T> MutableDataTree<T>.putAll(source: DataTree<T>) {
|
||||
source.forEach {
|
||||
put(it.name, it.data)
|
||||
}
|
||||
}
|
||||
|
||||
//public fun <T > DataSetBuilder<T>.populateFrom(flow: Flow<NamedData<T>>) {
|
||||
// flow.collect {
|
||||
// data(it.name, it.data)
|
||||
// }
|
||||
//}
|
||||
/**
|
||||
* Copy given data set and mirror its changes to this [DataSink] in [this@setAndObserve]. Returns an update [Job]
|
||||
*/
|
||||
public fun <T : Any> DataSink<T>.watchBranch(
|
||||
name: Name,
|
||||
dataSet: ObservableDataTree<T>,
|
||||
): Job {
|
||||
branch(name, dataSet)
|
||||
return dataSet.updates().onEach {
|
||||
put(name + it.name, it.data)
|
||||
}.launchIn(dataSet.updatesScope)
|
||||
|
||||
}
|
@ -194,7 +194,7 @@ public suspend fun <T, R> DataTree<T>.transform(
|
||||
val d = Data(outputType, newMeta, coroutineContext, listOf(namedData)) {
|
||||
block(namedData.awaitWithMeta())
|
||||
}
|
||||
data(namedData.name, d)
|
||||
put(namedData.name, d)
|
||||
}
|
||||
}
|
||||
|
||||
|
@ -1,10 +1,6 @@
|
||||
package space.kscience.dataforge.data
|
||||
|
||||
import kotlinx.coroutines.CoroutineScope
|
||||
import kotlinx.coroutines.Job
|
||||
import kotlinx.coroutines.launch
|
||||
import space.kscience.dataforge.names.Name
|
||||
import space.kscience.dataforge.names.plus
|
||||
|
||||
|
||||
/**
|
||||
@ -12,7 +8,7 @@ import space.kscience.dataforge.names.plus
|
||||
*/
|
||||
context(DataSink<T>)
|
||||
public infix fun <T : Any> String.put(data: Data<T>): Unit =
|
||||
data(Name.parse(this), data)
|
||||
put(Name.parse(this), data)
|
||||
|
||||
/**
|
||||
* Append node
|
||||
@ -29,16 +25,3 @@ public infix fun <T : Any> String.put(
|
||||
block: DataSink<T>.() -> Unit,
|
||||
): Unit = branch(Name.parse(this), block)
|
||||
|
||||
/**
|
||||
* Copy given data set and mirror its changes to this [LegacyDataTreeBuilder] in [this@setAndObserve]. Returns an update [Job]
|
||||
*/
|
||||
context(DataSink<T>)
|
||||
public fun <T : Any> CoroutineScope.setAndWatch(
|
||||
name: Name,
|
||||
dataSet: DataTree<T>,
|
||||
): Job = launch {
|
||||
branch(name, dataSet)
|
||||
dataSet.updates().collect {
|
||||
data(name + it.name, it.data)
|
||||
}
|
||||
}
|
@ -1,7 +1,7 @@
|
||||
package space.kscience.dataforge.data
|
||||
|
||||
import kotlinx.coroutines.ExperimentalCoroutinesApi
|
||||
import kotlinx.coroutines.delay
|
||||
import kotlinx.coroutines.runBlocking
|
||||
import kotlinx.coroutines.test.runTest
|
||||
import org.junit.jupiter.api.Test
|
||||
import space.kscience.dataforge.actions.Action
|
||||
@ -10,13 +10,13 @@ import space.kscience.dataforge.actions.mapping
|
||||
import space.kscience.dataforge.misc.DFExperimental
|
||||
import kotlin.test.assertEquals
|
||||
|
||||
@OptIn(DFExperimental::class, ExperimentalCoroutinesApi::class)
|
||||
@OptIn(DFExperimental::class)
|
||||
internal class ActionsTest {
|
||||
@Test
|
||||
fun testStaticMapAction() = runTest {
|
||||
val data: DataTree<Int> = DataTree {
|
||||
repeat(10) {
|
||||
static(it.toString(), it)
|
||||
wrap(it.toString(), it)
|
||||
}
|
||||
}
|
||||
|
||||
@ -28,20 +28,24 @@ internal class ActionsTest {
|
||||
}
|
||||
|
||||
@Test
|
||||
fun testDynamicMapAction() = runTest {
|
||||
val data: MutableDataTree<Int> = MutableDataTree(this)
|
||||
fun testDynamicMapAction() = runBlocking {
|
||||
val source: MutableDataTree<Int> = MutableDataTree()
|
||||
|
||||
val plusOne = Action.mapping<Int, Int> {
|
||||
result { it + 1 }
|
||||
}
|
||||
|
||||
val result = plusOne(data)
|
||||
val result = plusOne(source)
|
||||
|
||||
|
||||
repeat(10) {
|
||||
data.static(it.toString(), it)
|
||||
source.wrap(it.toString(), it)
|
||||
}
|
||||
|
||||
delay(20)
|
||||
delay(10)
|
||||
|
||||
source.close()
|
||||
result.awaitClose()
|
||||
|
||||
assertEquals(2, result["1"]?.await())
|
||||
}
|
||||
|
@ -1,6 +1,8 @@
|
||||
package space.kscience.dataforge.data
|
||||
|
||||
import kotlinx.coroutines.*
|
||||
import kotlinx.coroutines.delay
|
||||
import kotlinx.coroutines.runBlocking
|
||||
import kotlinx.coroutines.test.runTest
|
||||
import space.kscience.dataforge.misc.DFExperimental
|
||||
import space.kscience.dataforge.names.asName
|
||||
import kotlin.test.Test
|
||||
@ -9,26 +11,25 @@ import kotlin.test.assertEquals
|
||||
|
||||
internal class DataTreeBuilderTest {
|
||||
@Test
|
||||
fun testTreeBuild() = runBlocking {
|
||||
fun testTreeBuild() = runTest {
|
||||
val node = DataTree<Any> {
|
||||
"primary" put {
|
||||
static("a", "a")
|
||||
static("b", "b")
|
||||
wrap("a", "a")
|
||||
wrap("b", "b")
|
||||
}
|
||||
static("c.d", "c.d")
|
||||
static("c.f", "c.f")
|
||||
}
|
||||
runBlocking {
|
||||
assertEquals("a", node["primary.a"]?.await())
|
||||
assertEquals("b", node["primary.b"]?.await())
|
||||
assertEquals("c.d", node["c.d"]?.await())
|
||||
assertEquals("c.f", node["c.f"]?.await())
|
||||
wrap("c.d", "c.d")
|
||||
wrap("c.f", "c.f")
|
||||
}
|
||||
assertEquals("a", node["primary.a"]?.await())
|
||||
assertEquals("b", node["primary.b"]?.await())
|
||||
assertEquals("c.d", node["c.d"]?.await())
|
||||
assertEquals("c.f", node["c.f"]?.await())
|
||||
|
||||
}
|
||||
|
||||
@OptIn(DFExperimental::class)
|
||||
@Test
|
||||
fun testDataUpdate() = runBlocking {
|
||||
fun testDataUpdate() = runTest {
|
||||
val updateData = DataTree<Any> {
|
||||
"update" put {
|
||||
"a" put Data.static("a")
|
||||
@ -38,54 +39,30 @@ internal class DataTreeBuilderTest {
|
||||
|
||||
val node = DataTree<Any> {
|
||||
"primary" put {
|
||||
static("a", "a")
|
||||
static("b", "b")
|
||||
wrap("a", "a")
|
||||
wrap("b", "b")
|
||||
}
|
||||
static("root", "root")
|
||||
populateFrom(updateData)
|
||||
wrap("root", "root")
|
||||
putAll(updateData)
|
||||
}
|
||||
|
||||
runBlocking {
|
||||
assertEquals("a", node["update.a"]?.await())
|
||||
assertEquals("a", node["primary.a"]?.await())
|
||||
}
|
||||
assertEquals("a", node["update.a"]?.await())
|
||||
assertEquals("a", node["primary.a"]?.await())
|
||||
}
|
||||
|
||||
@Test
|
||||
fun testDynamicUpdates() = runBlocking {
|
||||
try {
|
||||
lateinit var updateJob: Job
|
||||
supervisorScope {
|
||||
val subNode = ObservableDataTree<Int>(this) {
|
||||
updateJob = launch {
|
||||
repeat(10) {
|
||||
delay(10)
|
||||
static("value", it)
|
||||
}
|
||||
delay(10)
|
||||
}
|
||||
}
|
||||
launch {
|
||||
subNode.updates().collect {
|
||||
println(it)
|
||||
}
|
||||
}
|
||||
val rootNode = ObservableDataTree<Int>(this) {
|
||||
setAndWatch("sub".asName(), subNode)
|
||||
}
|
||||
val subNode = MutableDataTree<Int>()
|
||||
|
||||
launch {
|
||||
rootNode.updates().collect {
|
||||
println(it)
|
||||
}
|
||||
}
|
||||
updateJob.join()
|
||||
assertEquals(9, rootNode["sub.value"]?.await())
|
||||
cancel()
|
||||
}
|
||||
} catch (t: Throwable) {
|
||||
if (t !is CancellationException) throw t
|
||||
val rootNode = MutableDataTree<Int> {
|
||||
watchBranch("sub".asName(), subNode)
|
||||
}
|
||||
|
||||
repeat(10) {
|
||||
subNode.wrap("value[$it]", it)
|
||||
}
|
||||
|
||||
delay(20)
|
||||
assertEquals(9, rootNode["sub.value[9]"]?.await())
|
||||
}
|
||||
}
|
@ -88,12 +88,17 @@ public fun <T : Any> Task(
|
||||
workspace: Workspace,
|
||||
taskName: Name,
|
||||
taskMeta: Meta,
|
||||
): TaskResult<T> = withContext(GoalExecutionRestriction() + workspace.goalLogger) {
|
||||
): TaskResult<T> {
|
||||
//TODO use safe builder and check for external data on add and detects cycles
|
||||
val dataset = MutableDataTree<T>(resultType, this).apply {
|
||||
TaskResultBuilder(workspace, taskName, taskMeta, this).apply { builder() }
|
||||
val dataset = MutableDataTree<T>(resultType, workspace.context).apply {
|
||||
TaskResultBuilder(workspace, taskName, taskMeta, this).apply {
|
||||
withContext(GoalExecutionRestriction() + workspace.goalLogger) {
|
||||
builder()
|
||||
}
|
||||
}
|
||||
}
|
||||
workspace.wrapResult(dataset, taskName, taskMeta)
|
||||
return workspace.wrapResult(dataset, taskName, taskMeta)
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
|
@ -2,6 +2,7 @@ package space.kscience.dataforge.workspace
|
||||
|
||||
import kotlinx.coroutines.CoroutineScope
|
||||
import kotlinx.coroutines.Job
|
||||
import kotlinx.coroutines.joinAll
|
||||
import kotlinx.coroutines.launch
|
||||
import space.kscience.dataforge.data.ObservableDataTree
|
||||
import space.kscience.dataforge.data.asSequence
|
||||
@ -20,7 +21,7 @@ public data class TaskResult<T>(
|
||||
public val workspace: Workspace,
|
||||
public val taskName: Name,
|
||||
public val taskMeta: Meta,
|
||||
): ObservableDataTree<T> by content
|
||||
) : ObservableDataTree<T> by content
|
||||
|
||||
/**
|
||||
* Wrap data into [TaskResult]
|
||||
@ -32,8 +33,9 @@ public fun <T> Workspace.wrapResult(data: ObservableDataTree<T>, taskName: Name,
|
||||
* Start computation for all data elements of this node.
|
||||
* The resulting [Job] is completed only when all of them are completed.
|
||||
*/
|
||||
public fun TaskResult<*>.compute(scope: CoroutineScope): Job = scope.launch {
|
||||
asSequence().forEach {
|
||||
public fun TaskResult<*>.launch(scope: CoroutineScope): Job {
|
||||
val jobs = asSequence().map {
|
||||
it.data.launch(scope)
|
||||
}
|
||||
}.toList()
|
||||
return scope.launch { jobs.joinAll() }
|
||||
}
|
@ -102,7 +102,7 @@ public inline fun <T : Any, reified R : Any> TaskContainer.action(
|
||||
noinline descriptorBuilder: MetaDescriptorBuilder.() -> Unit = {},
|
||||
): PropertyDelegateProvider<Any?, ReadOnlyProperty<Any?, TaskReference<R>>> =
|
||||
task(MetaDescriptor(descriptorBuilder)) {
|
||||
result(action.execute(workspace.context, from(selector), taskMeta.copy(metaTransform)))
|
||||
result(action.execute(from(selector), taskMeta.copy(metaTransform)))
|
||||
}
|
||||
|
||||
public class WorkspaceBuilder(
|
||||
|
@ -93,7 +93,7 @@ public suspend inline fun <T, reified R> TaskResultBuilder<R>.transformEach(
|
||||
action(it, data.name, meta)
|
||||
}
|
||||
|
||||
data(data.name, res)
|
||||
put(data.name, res)
|
||||
}
|
||||
}
|
||||
|
||||
@ -113,7 +113,7 @@ public suspend inline fun <T, reified R> TaskResultBuilder<R>.actionFrom(
|
||||
action: Action<T, R>,
|
||||
dependencyMeta: Meta = defaultDependencyMeta,
|
||||
) {
|
||||
branch(action.execute(workspace.context, from(selector, dependencyMeta), dependencyMeta))
|
||||
branch(action.execute(from(selector, dependencyMeta), dependencyMeta))
|
||||
}
|
||||
|
||||
|
||||
|
@ -11,7 +11,6 @@ import space.kscience.dataforge.names.Name
|
||||
import space.kscience.dataforge.names.NameToken
|
||||
import space.kscience.dataforge.names.asName
|
||||
import space.kscience.dataforge.names.plus
|
||||
import space.kscience.dataforge.workspace.FileData.defaultPathToName
|
||||
import java.nio.file.Files
|
||||
import java.nio.file.Path
|
||||
import java.nio.file.StandardWatchEventKinds
|
||||
@ -36,20 +35,6 @@ public object FileData {
|
||||
public const val DF_FILE_EXTENSION: String = "df"
|
||||
public val DEFAULT_IGNORE_EXTENSIONS: Set<String> = setOf(DF_FILE_EXTENSION)
|
||||
|
||||
/**
|
||||
* Transform file name into DataForg name. Ignores DataForge file extensions.
|
||||
*/
|
||||
public val defaultPathToName: (Path) -> Name = { path ->
|
||||
Name(
|
||||
path.map { segment ->
|
||||
if (segment.isRegularFile() && segment.extension in DEFAULT_IGNORE_EXTENSIONS) {
|
||||
NameToken(path.nameWithoutExtension)
|
||||
} else {
|
||||
NameToken(path.name)
|
||||
}
|
||||
}
|
||||
)
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@ -77,51 +62,68 @@ public fun IOPlugin.readFileData(
|
||||
)
|
||||
}
|
||||
|
||||
public fun DataSink<Binary>.file(io: IOPlugin, path: Path, name: Name) {
|
||||
public fun DataSink<Binary>.file(io: IOPlugin, name: Name, path: Path) {
|
||||
if (!path.isRegularFile()) error("Only regular files could be handled by this function")
|
||||
data(name, io.readFileData(path))
|
||||
put(name, io.readFileData(path))
|
||||
}
|
||||
|
||||
public fun DataSink<Binary>.directory(
|
||||
io: IOPlugin,
|
||||
name: Name,
|
||||
path: Path,
|
||||
pathToName: (Path) -> Name = defaultPathToName,
|
||||
) {
|
||||
if (!path.isDirectory()) error("Only directories could be handled by this function")
|
||||
val metaFile = path.resolve(IOPlugin.META_FILE_NAME)
|
||||
val dataFile = path.resolve(IOPlugin.DATA_FILE_NAME)
|
||||
//process root data
|
||||
if (metaFile.exists() || dataFile.exists()) {
|
||||
data(
|
||||
Name.EMPTY,
|
||||
|
||||
var dataBinary: Binary? = null
|
||||
var meta: Meta? = null
|
||||
Files.list(path).forEach { childPath ->
|
||||
val fileName = childPath.fileName.toString()
|
||||
if (fileName == IOPlugin.DATA_FILE_NAME) {
|
||||
dataBinary = childPath.asBinary()
|
||||
} else if (fileName.startsWith(IOPlugin.META_FILE_NAME)) {
|
||||
meta = io.readMetaFileOrNull(childPath)
|
||||
} else if (!fileName.startsWith("@")) {
|
||||
val token = if (childPath.isRegularFile() && childPath.extension in FileData.DEFAULT_IGNORE_EXTENSIONS) {
|
||||
NameToken(childPath.nameWithoutExtension)
|
||||
} else {
|
||||
NameToken(childPath.name)
|
||||
}
|
||||
|
||||
files(io, name + token, childPath)
|
||||
}
|
||||
}
|
||||
|
||||
//set data if it is relevant
|
||||
if (dataBinary != null || meta != null) {
|
||||
put(
|
||||
name,
|
||||
StaticData(
|
||||
typeOf<Binary>(),
|
||||
dataFile.takeIf { it.exists() }?.asBinary() ?: Binary.EMPTY,
|
||||
io.readMetaFileOrNull(metaFile) ?: Meta.EMPTY
|
||||
dataBinary ?: Binary.EMPTY,
|
||||
meta ?: Meta.EMPTY
|
||||
)
|
||||
)
|
||||
}
|
||||
Files.list(path).forEach { childPath ->
|
||||
val fileName = childPath.fileName.toString()
|
||||
if (!fileName.startsWith("@")) {
|
||||
files(io, childPath, pathToName)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
public fun DataSink<Binary>.files(io: IOPlugin, path: Path, pathToName: (Path) -> Name = defaultPathToName) {
|
||||
public fun DataSink<Binary>.files(
|
||||
io: IOPlugin,
|
||||
name: Name,
|
||||
path: Path,
|
||||
) {
|
||||
if (path.isRegularFile() && path.extension == "zip") {
|
||||
//Using explicit Zip file system to avoid bizarre compatibility bugs
|
||||
val fsProvider = FileSystemProvider.installedProviders().find { it.scheme == "jar" }
|
||||
?: error("Zip file system provider not found")
|
||||
val fs = fsProvider.newFileSystem(path, mapOf("create" to "true"))
|
||||
|
||||
return files(io, fs.rootDirectories.first(), pathToName)
|
||||
files(io, name, fs.rootDirectories.first())
|
||||
}
|
||||
if (path.isRegularFile()) {
|
||||
file(io, path, pathToName(path))
|
||||
file(io, name, path)
|
||||
} else {
|
||||
directory(io, path, pathToName)
|
||||
directory(io, name, path)
|
||||
}
|
||||
}
|
||||
|
||||
@ -132,11 +134,11 @@ private fun Path.toName() = Name(map { NameToken.parse(it.nameWithoutExtension)
|
||||
@DFExperimental
|
||||
public fun DataSink<Binary>.monitorFiles(
|
||||
io: IOPlugin,
|
||||
name: Name,
|
||||
path: Path,
|
||||
pathToName: (Path) -> Name = defaultPathToName,
|
||||
scope: CoroutineScope = io.context,
|
||||
): Job {
|
||||
files(io, path, pathToName)
|
||||
files(io, name, path)
|
||||
return scope.launch(Dispatchers.IO) {
|
||||
val watchService = path.fileSystem.newWatchService()
|
||||
|
||||
@ -153,11 +155,11 @@ public fun DataSink<Binary>.monitorFiles(
|
||||
for (event: WatchEvent<*> in key.pollEvents()) {
|
||||
val eventPath = event.context() as Path
|
||||
if (event.kind() == StandardWatchEventKinds.ENTRY_DELETE) {
|
||||
data(eventPath.toName(), null)
|
||||
put(eventPath.toName(), null)
|
||||
} else {
|
||||
val fileName = eventPath.fileName.toString()
|
||||
if (!fileName.startsWith("@")) {
|
||||
files(io, eventPath, pathToName)
|
||||
files(io, name, eventPath)
|
||||
}
|
||||
}
|
||||
}
|
||||
@ -179,29 +181,24 @@ public suspend fun <T : Any> IOPlugin.writeDataDirectory(
|
||||
dataSet: DataTree<T>,
|
||||
format: IOWriter<T>,
|
||||
envelopeFormat: EnvelopeFormat? = null,
|
||||
nameToPath: (name: Name, data: Data<T>) -> Path = { name, _ ->
|
||||
Path(name.tokens.joinToString("/") { token -> token.toStringUnescaped() })
|
||||
},
|
||||
) {
|
||||
withContext(Dispatchers.IO) {
|
||||
if (!Files.exists(path)) {
|
||||
Files.createDirectories(path)
|
||||
} else if (!Files.isDirectory(path)) {
|
||||
error("Can't write a node into file")
|
||||
}
|
||||
dataSet.forEach { (name, data) ->
|
||||
val childPath = path.resolve(nameToPath(name, data))
|
||||
childPath.parent.createDirectories()
|
||||
val envelope = data.toEnvelope(format)
|
||||
if (envelopeFormat != null) {
|
||||
writeEnvelopeFile(childPath, envelope, envelopeFormat)
|
||||
} else {
|
||||
writeEnvelopeDirectory(childPath, envelope)
|
||||
}
|
||||
}
|
||||
dataSet.meta?.let { writeMetaFile(path, it) }
|
||||
|
||||
): Unit = withContext(Dispatchers.IO) {
|
||||
if (!Files.exists(path)) {
|
||||
Files.createDirectories(path)
|
||||
} else if (!Files.isDirectory(path)) {
|
||||
error("Can't write a node into file")
|
||||
}
|
||||
dataSet.forEach { (name, data) ->
|
||||
val childPath = path.resolve(name.tokens.joinToString("/") { token -> token.toStringUnescaped() })
|
||||
childPath.parent.createDirectories()
|
||||
val envelope = data.toEnvelope(format)
|
||||
if (envelopeFormat != null) {
|
||||
writeEnvelopeFile(childPath, envelope, envelopeFormat)
|
||||
} else {
|
||||
writeEnvelopeDirectory(childPath, envelope)
|
||||
}
|
||||
}
|
||||
dataSet.meta?.let { writeMetaFile(path, it) }
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
@ -212,15 +209,12 @@ public suspend fun <T : Any> IOPlugin.writeDataDirectory(
|
||||
public fun DataSink<Binary>.resources(
|
||||
io: IOPlugin,
|
||||
vararg resources: String,
|
||||
pathToName: (Path) -> Name = defaultPathToName,
|
||||
classLoader: ClassLoader = Thread.currentThread().contextClassLoader,
|
||||
) {
|
||||
resources.forEach { resource ->
|
||||
val path = classLoader.getResource(resource)?.toURI()?.toPath() ?: error(
|
||||
"Resource with name $resource is not resolved"
|
||||
)
|
||||
branch(resource.asName()) {
|
||||
files(io, path, pathToName)
|
||||
}
|
||||
files(io, resource.asName(), path)
|
||||
}
|
||||
}
|
||||
|
@ -3,67 +3,36 @@ package space.kscience.dataforge.workspace
|
||||
import kotlinx.coroutines.Dispatchers
|
||||
import kotlinx.coroutines.withContext
|
||||
import space.kscience.dataforge.data.DataTree
|
||||
import space.kscience.dataforge.io.*
|
||||
import space.kscience.dataforge.io.EnvelopeFormat
|
||||
import space.kscience.dataforge.io.IOPlugin
|
||||
import space.kscience.dataforge.io.IOWriter
|
||||
import space.kscience.dataforge.misc.DFExperimental
|
||||
import java.nio.file.Files
|
||||
import java.nio.file.Path
|
||||
import java.nio.file.StandardOpenOption
|
||||
import java.util.zip.ZipEntry
|
||||
import java.util.zip.ZipOutputStream
|
||||
|
||||
|
||||
private suspend fun <T : Any> ZipOutputStream.writeNode(
|
||||
name: String,
|
||||
tree: DataTree<T>,
|
||||
dataFormat: IOFormat<T>,
|
||||
envelopeFormat: EnvelopeFormat = TaggedEnvelopeFormat,
|
||||
): Unit = withContext(Dispatchers.IO) {
|
||||
//TODO add directory-based envelope writer
|
||||
tree.data?.let {
|
||||
val envelope = it.toEnvelope(dataFormat)
|
||||
val entry = ZipEntry(name)
|
||||
putNextEntry(entry)
|
||||
|
||||
//TODO remove additional copy
|
||||
val bytes = ByteArray {
|
||||
writeWith(envelopeFormat, envelope)
|
||||
}
|
||||
write(bytes)
|
||||
}
|
||||
|
||||
|
||||
val entry = ZipEntry("$name/")
|
||||
putNextEntry(entry)
|
||||
closeEntry()
|
||||
tree.items.forEach { (token, item) ->
|
||||
val childName = "$name/$token"
|
||||
writeNode(childName, item, dataFormat, envelopeFormat)
|
||||
}
|
||||
|
||||
}
|
||||
import java.nio.file.spi.FileSystemProvider
|
||||
import kotlin.io.path.exists
|
||||
import kotlin.io.path.extension
|
||||
|
||||
/**
|
||||
* Write this [DataTree] as a zip archive
|
||||
*/
|
||||
@DFExperimental
|
||||
public suspend fun <T : Any> DataTree<T>.writeZip(
|
||||
public suspend fun <T : Any> IOPlugin.writeZip(
|
||||
path: Path,
|
||||
format: IOFormat<T>,
|
||||
envelopeFormat: EnvelopeFormat = TaggedEnvelopeFormat,
|
||||
dataSet: DataTree<T>,
|
||||
format: IOWriter<T>,
|
||||
envelopeFormat: EnvelopeFormat? = null,
|
||||
): Unit = withContext(Dispatchers.IO) {
|
||||
val actualFile = if (path.toString().endsWith(".zip")) {
|
||||
if (path.exists()) error("Can't override existing zip data file $path")
|
||||
val actualFile = if (path.extension == "zip") {
|
||||
path
|
||||
} else {
|
||||
path.resolveSibling(path.fileName.toString() + ".zip")
|
||||
}
|
||||
val fos = Files.newOutputStream(
|
||||
actualFile,
|
||||
StandardOpenOption.WRITE,
|
||||
StandardOpenOption.CREATE,
|
||||
StandardOpenOption.TRUNCATE_EXISTING
|
||||
)
|
||||
val zos = ZipOutputStream(fos)
|
||||
zos.use {
|
||||
it.writeNode("", this@writeZip, format, envelopeFormat)
|
||||
val fsProvider = FileSystemProvider.installedProviders().find { it.scheme == "jar" }
|
||||
?: error("Zip file system provider not found")
|
||||
//val fs = FileSystems.newFileSystem(actualFile, mapOf("create" to true))
|
||||
val fs = fsProvider.newFileSystem(actualFile, mapOf("create" to true))
|
||||
fs.use {
|
||||
writeDataDirectory(fs.rootDirectories.first(), dataSet, format, envelopeFormat)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
@ -1,17 +1,16 @@
|
||||
package space.kscience.dataforge.workspace
|
||||
|
||||
import kotlinx.coroutines.ExperimentalCoroutinesApi
|
||||
import kotlinx.coroutines.coroutineScope
|
||||
import kotlinx.coroutines.test.runTest
|
||||
import org.junit.jupiter.api.Test
|
||||
import space.kscience.dataforge.data.static
|
||||
import space.kscience.dataforge.data.wrap
|
||||
import space.kscience.dataforge.meta.Meta
|
||||
import space.kscience.dataforge.meta.boolean
|
||||
import space.kscience.dataforge.meta.get
|
||||
import space.kscience.dataforge.misc.DFExperimental
|
||||
import kotlin.test.assertEquals
|
||||
|
||||
@OptIn(ExperimentalCoroutinesApi::class, DFExperimental::class)
|
||||
@OptIn(DFExperimental::class)
|
||||
internal class CachingWorkspaceTest {
|
||||
|
||||
@Test
|
||||
@ -23,7 +22,7 @@ internal class CachingWorkspaceTest {
|
||||
data {
|
||||
//statically initialize data
|
||||
repeat(5) {
|
||||
static("myData[$it]", it)
|
||||
wrap("myData[$it]", it)
|
||||
}
|
||||
}
|
||||
|
||||
@ -39,7 +38,7 @@ internal class CachingWorkspaceTest {
|
||||
val doSecond by task<Any> {
|
||||
transformEach(
|
||||
doFirst,
|
||||
dependencyMeta = if(taskMeta["flag"].boolean == true) taskMeta else Meta.EMPTY
|
||||
dependencyMeta = if (taskMeta["flag"].boolean == true) taskMeta else Meta.EMPTY
|
||||
) { _, name, _ ->
|
||||
secondCounter++
|
||||
println("Done second on $name with flag=${taskMeta["flag"].boolean ?: false}")
|
||||
@ -51,13 +50,15 @@ internal class CachingWorkspaceTest {
|
||||
val secondA = workspace.produce("doSecond")
|
||||
val secondB = workspace.produce("doSecond", Meta { "flag" put true })
|
||||
val secondC = workspace.produce("doSecond")
|
||||
//use coroutineScope to wait for the result
|
||||
coroutineScope {
|
||||
first.compute(this)
|
||||
secondA.compute(this)
|
||||
secondB.compute(this)
|
||||
first.launch(this)
|
||||
secondA.launch(this)
|
||||
secondB.launch(this)
|
||||
//repeat to check caching
|
||||
secondC.compute(this)
|
||||
secondC.launch(this)
|
||||
}
|
||||
|
||||
assertEquals(10, firstCounter)
|
||||
assertEquals(10, secondCounter)
|
||||
}
|
||||
|
@ -20,13 +20,13 @@ class DataPropagationTestPlugin : WorkspacePlugin() {
|
||||
val result: Data<Int> = selectedData.foldToData(0) { result, data ->
|
||||
result + data.value
|
||||
}
|
||||
data("result", result)
|
||||
put("result", result)
|
||||
}
|
||||
|
||||
|
||||
val singleData by task<Int> {
|
||||
workspace.data.filterByType<Int>()["myData[12]"]?.let {
|
||||
data("result", it)
|
||||
put("result", it)
|
||||
}
|
||||
}
|
||||
|
||||
@ -47,7 +47,7 @@ class DataPropagationTest {
|
||||
}
|
||||
data {
|
||||
repeat(100) {
|
||||
static("myData[$it]", it)
|
||||
wrap("myData[$it]", it)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
@ -1,6 +1,5 @@
|
||||
package space.kscience.dataforge.workspace
|
||||
|
||||
import kotlinx.coroutines.runBlocking
|
||||
import kotlinx.coroutines.test.runTest
|
||||
import kotlinx.io.Sink
|
||||
import kotlinx.io.Source
|
||||
@ -13,7 +12,9 @@ import space.kscience.dataforge.io.*
|
||||
import space.kscience.dataforge.io.yaml.YamlPlugin
|
||||
import space.kscience.dataforge.meta.get
|
||||
import space.kscience.dataforge.misc.DFExperimental
|
||||
import space.kscience.dataforge.names.Name
|
||||
import java.nio.file.Files
|
||||
import kotlin.io.path.deleteExisting
|
||||
import kotlin.io.path.fileSize
|
||||
import kotlin.io.path.toPath
|
||||
import kotlin.test.Test
|
||||
@ -23,11 +24,11 @@ import kotlin.test.assertEquals
|
||||
class FileDataTest {
|
||||
val dataNode = DataTree<String> {
|
||||
branch("dir") {
|
||||
static("a", "Some string") {
|
||||
wrap("a", "Some string") {
|
||||
"content" put "Some string"
|
||||
}
|
||||
}
|
||||
static("b", "root data")
|
||||
wrap("b", "root data")
|
||||
// meta {
|
||||
// "content" put "This is root meta node"
|
||||
// }
|
||||
@ -45,17 +46,17 @@ class FileDataTest {
|
||||
|
||||
@Test
|
||||
@DFExperimental
|
||||
fun testDataWriteRead() = with(Global.io) {
|
||||
fun testDataWriteRead() = runTest {
|
||||
val io = Global.io
|
||||
val dir = Files.createTempDirectory("df_data_node")
|
||||
runBlocking {
|
||||
writeDataDirectory(dir, dataNode, StringIOFormat)
|
||||
println(dir.toUri().toString())
|
||||
val reconstructed = DataTree { files(io, dir) }
|
||||
.transform { (_, value) -> value.toByteArray().decodeToString() }
|
||||
assertEquals(dataNode["dir.a"]?.meta?.get("content"), reconstructed["dir.a"]?.meta?.get("content"))
|
||||
assertEquals(dataNode["b"]?.await(), reconstructed["b"]?.await())
|
||||
io.writeDataDirectory(dir, dataNode, StringIOFormat)
|
||||
println(dir.toUri().toString())
|
||||
val data = DataTree {
|
||||
files(io, Name.EMPTY, dir)
|
||||
}
|
||||
val reconstructed = data.transform { (_, value) -> value.toByteArray().decodeToString() }
|
||||
assertEquals(dataNode["dir.a"]?.meta?.get("content"), reconstructed["dir.a"]?.meta?.get("content"))
|
||||
assertEquals(dataNode["b"]?.await(), reconstructed["b"]?.await())
|
||||
}
|
||||
|
||||
|
||||
@ -64,9 +65,10 @@ class FileDataTest {
|
||||
fun testZipWriteRead() = runTest {
|
||||
val io = Global.io
|
||||
val zip = Files.createTempFile("df_data_node", ".zip")
|
||||
dataNode.writeZip(zip, StringIOFormat)
|
||||
zip.deleteExisting()
|
||||
io.writeZip(zip, dataNode, StringIOFormat)
|
||||
println(zip.toUri().toString())
|
||||
val reconstructed = DataTree { files(io, zip) }
|
||||
val reconstructed = DataTree { files(io, Name.EMPTY, zip) }
|
||||
.transform { (_, value) -> value.toByteArray().decodeToString() }
|
||||
assertEquals(dataNode["dir.a"]?.meta?.get("content"), reconstructed["dir.a"]?.meta?.get("content"))
|
||||
assertEquals(dataNode["b"]?.await(), reconstructed["b"]?.await())
|
||||
|
@ -3,7 +3,7 @@ package space.kscience.dataforge.workspace
|
||||
import kotlinx.coroutines.ExperimentalCoroutinesApi
|
||||
import kotlinx.coroutines.test.runTest
|
||||
import org.junit.jupiter.api.Test
|
||||
import space.kscience.dataforge.data.static
|
||||
import space.kscience.dataforge.data.wrap
|
||||
import space.kscience.dataforge.misc.DFExperimental
|
||||
import java.nio.file.Files
|
||||
|
||||
@ -16,7 +16,7 @@ class FileWorkspaceCacheTest {
|
||||
data {
|
||||
//statically initialize data
|
||||
repeat(5) {
|
||||
static("myData[$it]", it)
|
||||
wrap("myData[$it]", it)
|
||||
}
|
||||
}
|
||||
fileCache(Files.createTempDirectory("dataforge-temporary-cache"))
|
||||
@ -26,7 +26,7 @@ class FileWorkspaceCacheTest {
|
||||
}
|
||||
}
|
||||
|
||||
workspace.produce("echo").compute(this)
|
||||
workspace.produce("echo").launch(this)
|
||||
|
||||
}
|
||||
}
|
@ -62,14 +62,14 @@ internal class SimpleWorkspaceTest {
|
||||
data {
|
||||
//statically initialize data
|
||||
repeat(100) {
|
||||
static("myData[$it]", it)
|
||||
wrap("myData[$it]", it)
|
||||
}
|
||||
}
|
||||
|
||||
val filterOne by task<Int> {
|
||||
val name by taskMeta.string { error("Name field not defined") }
|
||||
from(testPluginFactory) { test }[name]?.let { source: Data<Int> ->
|
||||
data(name, source)
|
||||
put(name, source)
|
||||
}
|
||||
}
|
||||
|
||||
@ -97,7 +97,7 @@ internal class SimpleWorkspaceTest {
|
||||
val newData: Data<Int> = data.combine(linearData[data.name]!!) { l, r ->
|
||||
l + r
|
||||
}
|
||||
data(data.name, newData)
|
||||
put(data.name, newData)
|
||||
}
|
||||
}
|
||||
|
||||
@ -106,7 +106,7 @@ internal class SimpleWorkspaceTest {
|
||||
val res = from(square).foldToData(0) { l, r ->
|
||||
l + r.value
|
||||
}
|
||||
data("sum", res)
|
||||
put("sum", res)
|
||||
}
|
||||
|
||||
val averageByGroup by task<Int> {
|
||||
@ -116,13 +116,13 @@ internal class SimpleWorkspaceTest {
|
||||
l + r.value
|
||||
}
|
||||
|
||||
data("even", evenSum)
|
||||
put("even", evenSum)
|
||||
val oddSum = workspace.data.filterByType<Int> { name, _, _ ->
|
||||
name.toString().toInt() % 2 == 1
|
||||
}.foldToData(0) { l, r ->
|
||||
l + r.value
|
||||
}
|
||||
data("odd", oddSum)
|
||||
put("odd", oddSum)
|
||||
}
|
||||
|
||||
val delta by task<Int> {
|
||||
@ -132,7 +132,7 @@ internal class SimpleWorkspaceTest {
|
||||
val res = even.combine(odd) { l, r ->
|
||||
l - r
|
||||
}
|
||||
data("res", res)
|
||||
put("res", res)
|
||||
}
|
||||
|
||||
val customPipe by task<Int> {
|
||||
@ -140,7 +140,7 @@ internal class SimpleWorkspaceTest {
|
||||
val meta = data.meta.toMutableMeta().apply {
|
||||
"newValue" put 22
|
||||
}
|
||||
data(data.name + "new", data.transform { (data.meta["value"].int ?: 0) + it })
|
||||
put(data.name + "new", data.transform { (data.meta["value"].int ?: 0) + it })
|
||||
}
|
||||
}
|
||||
|
||||
|
Loading…
Reference in New Issue
Block a user