CHANGELOG.md

@@ -5,16 +5,12 @@
 ### Added
 
 ### Changed
-- Simplify inheritance logic in `MutableTypedMeta`
 
 ### Deprecated
-- MetaProvider `spec` is replaced by `readable`. `listOfSpec` replaced with `listOfReadable`
 
 ### Removed
 
 ### Fixed
-- Fixed NameToken parsing.
-- Top level string list meta conversion.
 
 ### Security
 

build.gradle.kts

@@ -9,7 +9,7 @@ plugins {
 
 allprojects {
     group = "space.kscience"
-    version = "0.9.1-dev-1"
+    version = "0.9.0"
 }
 
 subprojects {

dataforge-data/src/jvmTest/kotlin/space/kscience/dataforge/data/ActionsTest.kt

@@ -1,5 +1,8 @@
 package space.kscience.dataforge.data
 
+import kotlinx.coroutines.flow.collect
+import kotlinx.coroutines.flow.onEach
+import kotlinx.coroutines.flow.take
 import kotlinx.coroutines.test.runTest
 import space.kscience.dataforge.actions.Action
 import space.kscience.dataforge.actions.invoke
@@ -13,28 +16,27 @@ import kotlin.time.Duration.Companion.milliseconds
 internal class ActionsTest {
     @Test
     fun testStaticMapAction() = runTest(timeout = 500.milliseconds) {
-        val plusOne = Action.mapping<Int, Int> {
-            result { it + 1 }
-        }
-
         val data: DataTree<Int> = DataTree {
             repeat(10) {
                 putValue(it.toString(), it)
             }
         }
 
+        val plusOne = Action.mapping<Int, Int> {
+            result { it + 1 }
+        }
         val result = plusOne(data)
         assertEquals(2, result["1"]?.await())
     }
 
     @Test
     fun testDynamicMapAction() = runTest(timeout = 500.milliseconds) {
+        val source: MutableDataTree<Int> = MutableDataTree()
+
         val plusOne = Action.mapping<Int, Int> {
             result { it + 1 }
         }
 
-        val source: MutableDataTree<Int> = MutableDataTree()
-
         val result = plusOne(source)
 
 
@@ -42,7 +44,7 @@ internal class ActionsTest {
             source.updateValue(it.toString(), it)
         }
 
-//        result.updates.take(10).onEach { println(it.name) }.collect()
+        result.updates.take(10).onEach { println(it.name) }.collect()
 
         assertEquals(2, result["1"]?.await())
     }

dataforge-io/dataforge-io-proto/build.gradle.kts

@@ -1,32 +0,0 @@
-plugins {
-    id("space.kscience.gradle.mpp")
-    id("com.squareup.wire") version "4.9.9"
-}
-
-description = "ProtoBuf meta IO"
-
-kscience {
-    jvm()
-    dependencies {
-        api(projects.dataforgeIo)
-        api("com.squareup.wire:wire-runtime:4.9.9")
-    }
-    useSerialization {
-        protobuf()
-    }
-}
-
-wire {
-    kotlin {
-        sourcePath {
-            srcDir("src/commonMain/proto")
-        }
-    }
-}
-
-readme {
-    maturity = space.kscience.gradle.Maturity.PROTOTYPE
-    description = """
-        ProtoBuf Meta representation
-    """.trimIndent()
-}

dataforge-io/dataforge-io-proto/src/commonMain/proto/meta.proto

@@ -1,19 +0,0 @@
-syntax = "proto3";
-package space.kscience.dataforge.io.proto;
-
-message ProtoMeta {
-  message ProtoValue {
-    oneof value {
-      string stringValue = 2;
-      bool booleanValue = 3;
-      double doubleValue = 4;
-      float floatValue = 5;
-      int32 int32Value = 6;
-      int64 int64Value = 7;
-      bytes bytesValue = 8;
-    }
-  }
-  repeated ProtoValue value = 1;
-
-  map<string, ProtoMeta> items = 2;
-}

dataforge-io/dataforge-io-proto/src/jvmMain/kotlin/ProtoMetaFormat.kt

@@ -1,92 +0,0 @@
-package space.kscience.dataforge.io.proto
-
-import kotlinx.io.Sink
-import kotlinx.io.Source
-import kotlinx.io.asInputStream
-import kotlinx.io.asOutputStream
-import org.slf4j.LoggerFactory
-import space.kscience.dataforge.io.MetaFormat
-import space.kscience.dataforge.meta.*
-import space.kscience.dataforge.meta.descriptors.MetaDescriptor
-import space.kscience.dataforge.names.NameToken
-
-internal class ProtoMetaWrapper(private val proto: ProtoMeta) : Meta {
-
-    private fun ProtoMeta.ProtoValue.toValue(): Value = when {
-        stringValue != null -> stringValue.asValue()
-        booleanValue != null -> booleanValue.asValue()
-        doubleValue != null -> doubleValue.asValue()
-        floatValue != null -> floatValue.asValue()
-        int32Value != null -> int32Value.asValue()
-        int64Value != null -> int64Value.asValue()
-        bytesValue != null -> bytesValue.toByteArray().asValue()
-        else -> Null
-    }
-
-    override val value: Value?
-        get() = when (proto.value_.size) {
-            0 -> null
-            1 -> proto.value_[0].toValue()
-            else -> proto.value_.map { it.toValue() }.asValue()
-        }
-
-
-    override val items: Map<NameToken, Meta>
-        get() = proto.items.entries.associate { NameToken.parse(it.key) to ProtoMetaWrapper(it.value) }
-
-    override fun toString(): String = Meta.toString(this)
-
-    override fun equals(other: Any?): Boolean = Meta.equals(this, other as? Meta)
-
-    override fun hashCode(): Int = Meta.hashCode(this)
-}
-
-internal fun Meta.toProto(): ProtoMeta {
-
-
-    fun MutableList<ProtoMeta.ProtoValue>.appendProtoValues(value: Value): Unit {
-        when (value.type) {
-            ValueType.NULL -> {
-                //do nothing
-            }
-
-            ValueType.NUMBER -> when (value.value) {
-                is Int, is Short, is Byte -> add(ProtoMeta.ProtoValue(int32Value = value.int))
-                is Long -> add(ProtoMeta.ProtoValue(int64Value = value.long))
-                is Float -> add(ProtoMeta.ProtoValue(floatValue = value.float))
-                else -> {
-                    LoggerFactory.getLogger(ProtoMeta::class.java)
-                        .warn("Unknown number type ${value.value} encoded as Double")
-                    add(ProtoMeta.ProtoValue(doubleValue = value.double))
-                }
-            }
-
-            ValueType.STRING -> add(ProtoMeta.ProtoValue(stringValue = value.string))
-            ValueType.BOOLEAN -> add(ProtoMeta.ProtoValue(booleanValue = value.boolean))
-            ValueType.LIST -> {
-                value.list.forEach {
-                    if (it.type == ValueType.LIST) {
-                        error("Nested lists are not supported")
-                    } else {
-                        appendProtoValues(it)
-                    }
-                }
-            }
-        }
-    }
-
-    return ProtoMeta(
-        value_ = buildList { value?.let { appendProtoValues(it) } },
-        items.entries.associate { it.key.toString() to it.value.toProto() }
-    )
-}
-
-
-public object ProtoMetaFormat : MetaFormat {
-    override fun writeMeta(sink: Sink, meta: Meta, descriptor: MetaDescriptor?) {
-        ProtoMeta.ADAPTER.encode(sink.asOutputStream(), meta.toProto())
-    }
-
-    override fun readMeta(source: Source, descriptor: MetaDescriptor?): Meta =
-        ProtoMetaWrapper(ProtoMeta.ADAPTER.decode(source.asInputStream()))
-}

dataforge-io/dataforge-io-proto/src/jvmTest/kotlin/ProtoBufTest.kt

@@ -1,39 +0,0 @@
-package space.kscience.dataforge.io.proto
-
-import space.kscience.dataforge.meta.Meta
-import space.kscience.dataforge.meta.get
-import kotlin.test.Test
-import kotlin.test.assertEquals
-
-class ProtoBufTest {
-
-    @Test
-    fun testProtoBufMetaFormat(){
-        val meta = Meta {
-            "a" put 22
-            "node" put {
-                "b" put "DDD"
-                "c" put 11.1
-                "d" put {
-                    "d1" put {
-                        "d11" put "aaa"
-                        "d12" put "bbb"
-                    }
-                    "d2" put 2
-                }
-                "array" put doubleArrayOf(1.0, 2.0, 3.0)
-            }
-        }
-        val buffer = kotlinx.io.Buffer()
-        ProtoMetaFormat.writeTo(buffer,meta)
-        val result = ProtoMetaFormat.readFrom(buffer)
-
-        println(result["a"]?.value)
-
-        meta.items.keys.forEach {
-            assertEquals(meta[it],result[it],"${meta[it]} != ${result[it]}")
-        }
-
-        assertEquals(meta, result)
-    }
-}

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/JsonMeta.kt

@@ -117,11 +117,8 @@ private fun MutableMap<NameToken, SealedMeta>.addJsonElement(
             } else {
                 val indexKey = descriptor?.indexKey ?: Meta.INDEX_KEY
                 element.forEachIndexed { serial, childElement ->
-
+                    val index = (childElement as? JsonObject)?.get(indexKey)?.jsonPrimitive?.content
-                    val index = (childElement as? JsonObject)
-                        ?.get(indexKey)?.jsonPrimitive?.content
                         ?: serial.toString()
-
                     val child: SealedMeta = when (childElement) {
                         is JsonObject -> childElement.toMeta(descriptor)
                         is JsonArray -> {
@@ -163,15 +160,11 @@ public fun JsonObject.toMeta(descriptor: MetaDescriptor? = null): SealedMeta {
 public fun JsonElement.toMeta(descriptor: MetaDescriptor? = null): SealedMeta = when (this) {
     is JsonPrimitive -> Meta(toValue(descriptor))
     is JsonObject -> toMeta(descriptor)
-    is JsonArray -> if (any { it is JsonObject }) {
+    is JsonArray -> SealedMeta(null,
-        SealedMeta(null,
         linkedMapOf<NameToken, SealedMeta>().apply {
             addJsonElement(Meta.JSON_ARRAY_KEY, this@toMeta, null)
         }
     )
-    } else{
-        Meta(map { it.toValueOrNull(descriptor) ?: kotlin.error("Unreachable: should not contain objects") }.asValue())
-    }
 }
 
 //

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/MetaConverter.kt

@@ -11,7 +11,7 @@ import space.kscience.dataforge.misc.DFExperimental
 /**
  * A converter of generic object to and from [Meta]
  */
-public interface MetaConverter<T> : MetaReader<T> {
+public interface MetaConverter<T>: MetaReader<T> {
 
     /**
      * A descriptor for resulting meta
@@ -116,12 +116,6 @@ public interface MetaConverter<T> : MetaReader<T> {
             override fun convert(obj: E): Meta = Meta(obj.asValue())
         }
 
-        public val stringList: MetaConverter<List<String>> = object : MetaConverter<List<String>> {
-            override fun convert(obj: List<String>): Meta = Meta(obj.map { it.asValue() }.asValue())
-
-            override fun readOrNull(source: Meta): List<String>? = source.stringList
-        }
-
         public fun <T> valueList(
             writer: (T) -> Value = { Value.of(it) },
             reader: (Value) -> T,

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/MetaDelegate.kt

@@ -24,45 +24,20 @@ public fun MetaProvider.node(
     }
 }
 
-
 /**
- * Use [reader] to read the Meta node
+ * Use [metaReader] to read the Meta node
  */
-public fun <T> MetaProvider.readable(
+public fun <T> MetaProvider.spec(
-    reader: MetaReader<T>,
+    metaReader: MetaReader<T>,
     key: Name? = null,
 ): MetaDelegate<T?> = object : MetaDelegate<T?> {
-    override val descriptor: MetaDescriptor? get() = reader.descriptor
+    override val descriptor: MetaDescriptor? get() = metaReader.descriptor
 
     override fun getValue(thisRef: Any?, property: KProperty<*>): T? {
-        return get(key ?: property.name.asName())?.let { reader.read(it) }
+        return get(key ?: property.name.asName())?.let { metaReader.read(it) }
     }
 }
 
-/**
- * Use [reader] to read the Meta node or return [default] if node does not exist
- */
-public fun <T> MetaProvider.readable(
-    reader: MetaReader<T>,
-    default: T,
-    key: Name? = null,
-): MetaDelegate<T> = object : MetaDelegate<T> {
-    override val descriptor: MetaDescriptor? get() = reader.descriptor
-
-    override fun getValue(thisRef: Any?, property: KProperty<*>): T {
-        return get(key ?: property.name.asName())?.let { reader.read(it) } ?: default
-    }
-}
-
-/**
- * Use [reader] to read the Meta node
- */
-@Deprecated("Replace with reading", ReplaceWith("reading(metaReader, key)"))
-public fun <T> MetaProvider.spec(
-    reader: MetaReader<T>,
-    key: Name? = null,
-): MetaDelegate<T?> = readable(reader, key)
-
 /**
  * Use object serializer to transform it to Meta and back
  */
@@ -70,51 +45,34 @@ public fun <T> MetaProvider.spec(
 public inline fun <reified T> MetaProvider.serializable(
     key: Name? = null,
     descriptor: MetaDescriptor? = null,
-): MetaDelegate<T?> = readable(MetaConverter.serializable(descriptor), key)
+): MetaDelegate<T?> = spec(MetaConverter.serializable(descriptor), key)
-
-@DFExperimental
-public inline fun <reified T> MetaProvider.serializable(
-    key: Name? = null,
-    default: T,
-    descriptor: MetaDescriptor? = null,
-): MetaDelegate<T> = readable(MetaConverter.serializable(descriptor), default, key)
 
 @Deprecated("Use convertable", ReplaceWith("convertable(converter, key)"))
 public fun <T> MetaProvider.node(
     key: Name? = null,
     converter: MetaReader<T>,
-): ReadOnlyProperty<Any?, T?> = readable(converter, key)
+): ReadOnlyProperty<Any?, T?> = spec(converter, key)
-
-/**
- * Use [reader] to convert a list of same name siblings meta to object
- */
-public fun <T> Meta.listOfReadable(
-    reader: MetaReader<T>,
-    key: Name? = null,
-): MetaDelegate<List<T>> = object : MetaDelegate<List<T>> {
-    override fun getValue(thisRef: Any?, property: KProperty<*>): List<T> {
-        val name = key ?: property.name.asName()
-        return getIndexed(name).values.map { reader.read(it) }
-    }
-
-    override val descriptor: MetaDescriptor? = reader.descriptor?.copy(multiple = true)
-}
-
 
 /**
  * Use [converter] to convert a list of same name siblings meta to object
  */
-@Deprecated("Replace with readingList", ReplaceWith("readingList(converter, key)"))
 public fun <T> Meta.listOfSpec(
     converter: MetaReader<T>,
     key: Name? = null,
-): MetaDelegate<List<T>> = listOfReadable(converter, key)
+): MetaDelegate<List<T>> = object : MetaDelegate<List<T>> {
+    override fun getValue(thisRef: Any?, property: KProperty<*>): List<T> {
+        val name = key ?: property.name.asName()
+        return getIndexed(name).values.map { converter.read(it) }
+    }
+
+    override val descriptor: MetaDescriptor? = converter.descriptor?.copy(multiple = true)
+}
 
 @DFExperimental
 public inline fun <reified T> Meta.listOfSerializable(
     key: Name? = null,
     descriptor: MetaDescriptor? = null,
-): MetaDelegate<List<T>> = listOfReadable(MetaConverter.serializable(descriptor), key)
+): MetaDelegate<List<T>> = listOfSpec(MetaConverter.serializable(descriptor), key)
 
 /**
  * A property delegate that uses custom key

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/MutableMeta.kt

@@ -159,17 +159,7 @@ public interface MutableTypedMeta<M : MutableTypedMeta<M>> : TypedMeta<M>, Mutab
      */
     @DFExperimental
     public fun attach(name: Name, node: M)
-
+    override fun get(name: Name): M?
-    override fun get(name: Name): M? {
-        tailrec fun M.find(name: Name): M? = if (name.isEmpty()) {
-            self
-        } else {
-            items[name.firstOrNull()!!]?.find(name.cutFirst())
-        }
-
-        return self.find(name)
-    }
-
     override fun getOrCreate(name: Name): M
 }
 
@@ -398,7 +388,7 @@ public fun MutableMeta.reset(newMeta: Meta) {
     (items.keys - newMeta.items.keys).forEach {
         remove(it.asName())
     }
-    newMeta.items.forEach { (token, item) ->
+    newMeta.items.forEach { (token, item)->
         set(token, item)
     }
 }

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/MutableMetaDelegate.kt

@@ -54,25 +54,9 @@ public fun <T> MutableMetaProvider.convertable(
     }
 }
 
-public fun <T> MutableMetaProvider.convertable(
+@Deprecated("Use convertable", ReplaceWith("convertable(converter, key)"))
-    converter: MetaConverter<T>,
+public fun <T> MutableMetaProvider.node(key: Name? = null, converter: MetaConverter<T>): MutableMetaDelegate<T?> =
-    default: T,
+    convertable(converter, key)
-    key: Name? = null,
-): MutableMetaDelegate<T> = object : MutableMetaDelegate<T> {
-
-    override val descriptor: MetaDescriptor? get() = converter.descriptor
-
-
-    override fun getValue(thisRef: Any?, property: KProperty<*>): T {
-        val name = key ?: property.name.asName()
-        return get(name)?.let { converter.read(it) } ?: default
-    }
-
-    override fun setValue(thisRef: Any?, property: KProperty<*>, value: T) {
-        val name = key ?: property.name.asName()
-        set(name, value?.let { converter.convert(it) })
-    }
-}
 
 /**
  * Use object serializer to transform it to Meta and back.
@@ -82,14 +66,7 @@ public fun <T> MutableMetaProvider.convertable(
 public inline fun <reified T> MutableMetaProvider.serializable(
     descriptor: MetaDescriptor? = null,
     key: Name? = null,
-): MutableMetaDelegate<T?> = convertable<T>(MetaConverter.serializable(descriptor), key)
+): MutableMetaDelegate<T?> = convertable(MetaConverter.serializable(descriptor), key)
-
-@DFExperimental
-public inline fun <reified T> MutableMetaProvider.serializable(
-    descriptor: MetaDescriptor? = null,
-    default: T,
-    key: Name? = null,
-): MutableMetaDelegate<T> = convertable(MetaConverter.serializable(descriptor), default, key)
 
 /**
  * Use [converter] to convert a list of same name siblings meta to object and back.

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/ObservableMeta.kt

@@ -2,6 +2,9 @@ package space.kscience.dataforge.meta
 
 import space.kscience.dataforge.misc.ThreadSafe
 import space.kscience.dataforge.names.Name
+import space.kscience.dataforge.names.cutFirst
+import space.kscience.dataforge.names.firstOrNull
+import space.kscience.dataforge.names.isEmpty
 
 
 internal data class MetaListener(
@@ -36,7 +39,20 @@ public interface ObservableMeta : Meta {
  * A [Meta] which is both observable and mutable
  */
 public interface ObservableMutableMeta : ObservableMeta, MutableMeta, MutableTypedMeta<ObservableMutableMeta> {
+
     override val self: ObservableMutableMeta get() = this
+
+    override fun getOrCreate(name: Name): ObservableMutableMeta
+
+    override fun get(name: Name): ObservableMutableMeta? {
+        tailrec fun ObservableMutableMeta.find(name: Name): ObservableMutableMeta? = if (name.isEmpty()) {
+            this
+        } else {
+            items[name.firstOrNull()!!]?.find(name.cutFirst())
+        }
+
+        return find(name)
+    }
 }
 
 internal abstract class AbstractObservableMeta : ObservableMeta {

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/meta/Scheme.kt

@@ -221,14 +221,13 @@ public fun <T : Scheme> Configurable.updateWith(
 /**
  * A delegate that uses a [MetaReader] to wrap a child of this provider
  */
-public fun <T : Scheme> MutableMetaProvider.scheme(
+public fun <T : Scheme> MutableMeta.scheme(
     spec: SchemeSpec<T>,
     key: Name? = null,
 ): ReadWriteProperty<Any?, T> = object : ReadWriteProperty<Any?, T> {
     override fun getValue(thisRef: Any?, property: KProperty<*>): T {
         val name = key ?: property.name.asName()
-        val node = get(name)?: MutableMeta().also { set(name,it) }
+        return spec.write(getOrCreate(name))
-        return spec.write(node)
     }
 
     override fun setValue(thisRef: Any?, property: KProperty<*>, value: T) {

dataforge-meta/src/commonMain/kotlin/space/kscience/dataforge/names/NameToken.kt

@@ -67,29 +67,10 @@ public class NameToken(public val body: String, public val index: String? = null
          * Parse name token from a string
          */
         public fun parse(string: String): NameToken {
-            var indexStart = -1
+            val body = string.substringBefore('[')
-            var indexEnd = -1
+            val index = string.substringAfter('[', "")
-            string.forEachIndexed { index, c ->
+            if (index.isNotEmpty() && !index.endsWith(']')) error("NameToken with index must end with ']'")
-                when (c) {
+            return NameToken(body, index.removeSuffix("]"))
-                    '[' -> when {
-                        indexStart >= 0 -> error("Second opening bracket not allowed in NameToken: $string")
-                        else -> indexStart = index
-                    }
-
-                    ']' -> when {
-                        indexStart < 0 -> error("Closing index bracket could not be used before opening bracket in NameToken: $string")
-                        indexEnd >= 0 -> error("Second closing bracket not allowed in NameToken: $string")
-                        else -> indexEnd = index
-                    }
-
-                    else -> if(indexEnd>=0) error("Symbols not allowed after index in NameToken: $string")
-                }
-            }
-            if(indexStart>=0 && indexEnd<0) error("Opening bracket without closing bracket not allowed in NameToken: $string")
-            return NameToken(
-                if(indexStart>=0) string.substring(0, indexStart) else string,
-                if(indexStart>=0) string.substring(indexStart + 1, indexEnd) else null
-            )
         }
     }
 }

dataforge-meta/src/commonTest/kotlin/space/kscience/dataforge/meta/ConvertersTest.kt

@@ -1,17 +0,0 @@
-package space.kscience.dataforge.meta
-
-import kotlin.test.Test
-import kotlin.test.assertEquals
-
-class ConvertersTest {
-
-    @Test
-    fun stringListConversion() {
-        val list = listOf("A", "B", "C")
-        val meta = MetaConverter.stringList.convert(list)
-        val json = meta.toJson()
-        val reconstructedMeta = json.toMeta()
-        val reconstructed = MetaConverter.stringList.read(reconstructedMeta)
-        assertEquals(list,reconstructed)
-    }
-}

dataforge-meta/src/commonTest/kotlin/space/kscience/dataforge/names/NameTest.kt

@@ -56,22 +56,10 @@ class NameTest {
 
         val token2 = NameToken.parse("token-body")
         assertEquals("token-body", token2.body)
-        assertEquals(null, token2.index)
+        assertEquals("", token2.index)
-
-//        val token3 = NameToken.parse("[token-index]")
-//        assertEquals("", token3.body)
-//        assertEquals("token-index", token3.index)
-
-        assertFails{
-            NameToken.parse("[token-index]")
-        }
 
         assertFails {
             NameToken.parse("token[22")
         }
-
-        assertFails {
-            NameToken.parse("token[22]ddd")
-        }
     }
 }

settings.gradle.kts

@@ -43,7 +43,6 @@ include(
     ":dataforge-meta",
     ":dataforge-io",
     ":dataforge-io:dataforge-io-yaml",
-    ":dataforge-io:dataforge-io-proto",
     ":dataforge-context",
     ":dataforge-data",
     ":dataforge-workspace",