Migrate to git. Update versions

This commit is contained in:
Alexander Nozik 2020-10-18 19:33:32 +03:00
parent d1b66778b4
commit 981cb5f821
14 changed files with 1865 additions and 1855 deletions

5
.gitignore vendored Normal file
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@ -0,0 +1,5 @@
/.gradle/
/.idea/
/build/
/output/
!gradle-wrapper.jar

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@ -1,13 +0,0 @@
\.orig$
\.orig\..*$
\.chg\..*$
\.rej$
\.conflict\~$
.gradle/
output/
.ipynb_checkpoints/
notebooks/images/
build/
.idea/*
!gradle-wrapper.jar

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@ -1,15 +1,14 @@
plugins { plugins {
id "org.jetbrains.kotlin.jvm" version "1.3.10" id "org.jetbrains.kotlin.jvm" version "1.4.10"
id "java"
id "application" id "application"
} }
group = 'inr.numass' group = 'ru.inr.mass'
version = 'dev' version = '1.0.0'
description = "Numass trapping simulation" description = "Numass trapping simulation"
mainClassName = "inr.numass.trapping.TrappingKt" mainClassName = "ru.inr.mass.trapping.TrappingKt"
repositories { repositories {
mavenCentral() mavenCentral()

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@ -1,5 +1,5 @@
distributionBase=GRADLE_USER_HOME distributionBase=GRADLE_USER_HOME
distributionPath=wrapper/dists distributionPath=wrapper/dists
distributionUrl=https\://services.gradle.org/distributions/gradle-6.7-bin.zip
zipStoreBase=GRADLE_USER_HOME zipStoreBase=GRADLE_USER_HOME
zipStorePath=wrapper/dists zipStorePath=wrapper/dists
distributionUrl=https\://services.gradle.org/distributions/gradle-4.5-bin.zip

53
gradlew vendored
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@ -1,5 +1,21 @@
#!/usr/bin/env sh #!/usr/bin/env sh
#
# Copyright 2015 the original author or authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
############################################################################## ##############################################################################
## ##
## Gradle start up script for UN*X ## Gradle start up script for UN*X
@ -28,7 +44,7 @@ APP_NAME="Gradle"
APP_BASE_NAME=`basename "$0"` APP_BASE_NAME=`basename "$0"`
# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. # Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
DEFAULT_JVM_OPTS="" DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
# Use the maximum available, or set MAX_FD != -1 to use that value. # Use the maximum available, or set MAX_FD != -1 to use that value.
MAX_FD="maximum" MAX_FD="maximum"
@ -66,6 +82,7 @@ esac
CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
# Determine the Java command to use to start the JVM. # Determine the Java command to use to start the JVM.
if [ -n "$JAVA_HOME" ] ; then if [ -n "$JAVA_HOME" ] ; then
if [ -x "$JAVA_HOME/jre/sh/java" ] ; then if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
@ -109,10 +126,11 @@ if $darwin; then
GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\"" GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
fi fi
# For Cygwin, switch paths to Windows format before running java # For Cygwin or MSYS, switch paths to Windows format before running java
if $cygwin ; then if [ "$cygwin" = "true" -o "$msys" = "true" ] ; then
APP_HOME=`cygpath --path --mixed "$APP_HOME"` APP_HOME=`cygpath --path --mixed "$APP_HOME"`
CLASSPATH=`cygpath --path --mixed "$CLASSPATH"` CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
JAVACMD=`cygpath --unix "$JAVACMD"` JAVACMD=`cygpath --unix "$JAVACMD"`
# We build the pattern for arguments to be converted via cygpath # We build the pattern for arguments to be converted via cygpath
@ -138,19 +156,19 @@ if $cygwin ; then
else else
eval `echo args$i`="\"$arg\"" eval `echo args$i`="\"$arg\""
fi fi
i=$((i+1)) i=`expr $i + 1`
done done
case $i in case $i in
(0) set -- ;; 0) set -- ;;
(1) set -- "$args0" ;; 1) set -- "$args0" ;;
(2) set -- "$args0" "$args1" ;; 2) set -- "$args0" "$args1" ;;
(3) set -- "$args0" "$args1" "$args2" ;; 3) set -- "$args0" "$args1" "$args2" ;;
(4) set -- "$args0" "$args1" "$args2" "$args3" ;; 4) set -- "$args0" "$args1" "$args2" "$args3" ;;
(5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;; 5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
(6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;; 6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
(7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;; 7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
(8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;; 8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
(9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;; 9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
esac esac
fi fi
@ -159,14 +177,9 @@ save () {
for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done
echo " " echo " "
} }
APP_ARGS=$(save "$@") APP_ARGS=`save "$@"`
# Collect all arguments for the java command, following the shell quoting and substitution rules # Collect all arguments for the java command, following the shell quoting and substitution rules
eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS" eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS"
# by default we should be in the correct project dir, but when run from Finder on Mac, the cwd is wrong
if [ "$(uname)" = "Darwin" ] && [ "$HOME" = "$PWD" ]; then
cd "$(dirname "$0")"
fi
exec "$JAVACMD" "$@" exec "$JAVACMD" "$@"

43
gradlew.bat vendored
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@ -1,3 +1,19 @@
@rem
@rem Copyright 2015 the original author or authors.
@rem
@rem Licensed under the Apache License, Version 2.0 (the "License");
@rem you may not use this file except in compliance with the License.
@rem You may obtain a copy of the License at
@rem
@rem https://www.apache.org/licenses/LICENSE-2.0
@rem
@rem Unless required by applicable law or agreed to in writing, software
@rem distributed under the License is distributed on an "AS IS" BASIS,
@rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
@rem See the License for the specific language governing permissions and
@rem limitations under the License.
@rem
@if "%DEBUG%" == "" @echo off @if "%DEBUG%" == "" @echo off
@rem ########################################################################## @rem ##########################################################################
@rem @rem
@ -13,15 +29,18 @@ if "%DIRNAME%" == "" set DIRNAME=.
set APP_BASE_NAME=%~n0 set APP_BASE_NAME=%~n0
set APP_HOME=%DIRNAME% set APP_HOME=%DIRNAME%
@rem Resolve any "." and ".." in APP_HOME to make it shorter.
for %%i in ("%APP_HOME%") do set APP_HOME=%%~fi
@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. @rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
set DEFAULT_JVM_OPTS= set DEFAULT_JVM_OPTS="-Xmx64m" "-Xms64m"
@rem Find java.exe @rem Find java.exe
if defined JAVA_HOME goto findJavaFromJavaHome if defined JAVA_HOME goto findJavaFromJavaHome
set JAVA_EXE=java.exe set JAVA_EXE=java.exe
%JAVA_EXE% -version >NUL 2>&1 %JAVA_EXE% -version >NUL 2>&1
if "%ERRORLEVEL%" == "0" goto init if "%ERRORLEVEL%" == "0" goto execute
echo. echo.
echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
@ -35,7 +54,7 @@ goto fail
set JAVA_HOME=%JAVA_HOME:"=% set JAVA_HOME=%JAVA_HOME:"=%
set JAVA_EXE=%JAVA_HOME%/bin/java.exe set JAVA_EXE=%JAVA_HOME%/bin/java.exe
if exist "%JAVA_EXE%" goto init if exist "%JAVA_EXE%" goto execute
echo. echo.
echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
@ -45,28 +64,14 @@ echo location of your Java installation.
goto fail goto fail
:init
@rem Get command-line arguments, handling Windows variants
if not "%OS%" == "Windows_NT" goto win9xME_args
:win9xME_args
@rem Slurp the command line arguments.
set CMD_LINE_ARGS=
set _SKIP=2
:win9xME_args_slurp
if "x%~1" == "x" goto execute
set CMD_LINE_ARGS=%*
:execute :execute
@rem Setup the command line @rem Setup the command line
set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
@rem Execute Gradle @rem Execute Gradle
"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS% "%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %*
:end :end
@rem End local scope for the variables with windows NT shell @rem End local scope for the variables with windows NT shell

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@ -1,23 +1,23 @@
package inr.numass.trapping package ru.inr.mass.trapping
import java.util.* import java.util.*
class FunctionCache(val xPrecision: Double, val function: (Double) -> Double) { class FunctionCache(private val xPrecision: Double, val function: (Double) -> Double) {
private val values = TreeMap<Double, Double>() private val values = TreeMap<Double, Double>()
operator fun invoke(x: Double): Double { operator fun invoke(x: Double): Double {
val floor: MutableMap.MutableEntry<Double, Double>? = values.floorEntry(x) val floor: MutableMap.MutableEntry<Double, Double>? = values.floorEntry(x)
val ceil: MutableMap.MutableEntry<Double, Double>? = values.ceilingEntry(x) val ceil: MutableMap.MutableEntry<Double, Double>? = values.ceilingEntry(x)
if (floor == null || ceil == null || ceil.key - floor.key <= xPrecision) { return if (floor == null || ceil == null || ceil.key - floor.key <= xPrecision) {
val newValue = function(x) val newValue = function(x)
values[x] = newValue values[x] = newValue
return newValue newValue
} else { } else {
val x0 = floor.key val x0 = floor.key
val x1 = ceil.key val x1 = ceil.key
val y0 = floor.value val y0 = floor.value
val y1 = ceil.value val y1 = ceil.value
return y0 + (x - x0) * (y1 - y0) / (x1 - x0) y0 + (x - x0) * (y1 - y0) / (x1 - x0)
} }
} }
} }

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@ -13,11 +13,11 @@
* See the License for the specific language governing permissions and * See the License for the specific language governing permissions and
* limitations under the License. * limitations under the License.
*/ */
package inr.numass.trapping package ru.inr.mass.trapping
import java.io.PrintStream import java.io.PrintStream
import java.lang.Integer.valueOf import java.lang.Integer.valueOf
import java.util.HashMap import java.util.*
/** /**
* TODO есть объект MultiDimensionalCounter, исползовать его? * TODO есть объект MultiDimensionalCounter, исползовать его?

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@ -1,9 +1,9 @@
package inr.numass.trapping package ru.inr.mass.trapping
import org.apache.commons.math3.random.RandomGenerator import org.apache.commons.math3.random.RandomGenerator
import org.apache.commons.rng.UniformRandomProvider import org.apache.commons.rng.UniformRandomProvider
class RandomGeneratorBridge(val provider: UniformRandomProvider) : RandomGenerator { class RandomGeneratorBridge(private val provider: UniformRandomProvider) : RandomGenerator {
override fun nextBoolean(): Boolean = provider.nextBoolean() override fun nextBoolean(): Boolean = provider.nextBoolean()
override fun nextFloat(): Float = provider.nextFloat() override fun nextFloat(): Float = provider.nextFloat()

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@ -1,4 +1,4 @@
package inr.numass.trapping package ru.inr.mass.trapping
import org.apache.commons.math3.random.RandomGenerator import org.apache.commons.math3.random.RandomGenerator
import org.apache.commons.math3.util.FastMath.* import org.apache.commons.math3.util.FastMath.*
@ -845,7 +845,7 @@ object Scatter {
val lnt: Double val lnt: Double
if (E < 16.0) { if (E < 16.0) {
sigma = 1e-40 sigma = 1e-40
} else if (E >= 16.0 && E <= 250.0) { } else if (E in 16.0..250.0) {
t = E / B t = E / B
u = U / B u = U / B
r = R / B r = R / B
@ -951,11 +951,10 @@ object Scatter {
private fun sigmadiss15(E: Double): Double { private fun sigmadiss15(E: Double): Double {
var lnsigma: Double = 0.0 var lnsigma: Double = 0.0
val lnE: Double = log(E) val lnE: Double = log(E)
var lnEn: Double
val Emin: Double = 16.5 val Emin: Double = 16.5
var n: Int var n: Int
// E is in eV // E is in eV
lnEn = 1.0 var lnEn: Double = 1.0
val sigma = if (E < Emin) { val sigma = if (E < Emin) {
0.0 0.0
} else { } else {

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@ -1,4 +1,4 @@
package inr.numass.trapping package ru.inr.mass.trapping
import org.apache.commons.math3.analysis.interpolation.LinearInterpolator import org.apache.commons.math3.analysis.interpolation.LinearInterpolator
import org.apache.commons.math3.random.JDKRandomGenerator import org.apache.commons.math3.random.JDKRandomGenerator

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@ -2,7 +2,7 @@
* To change this template, choose Tools | Templates * To change this template, choose Tools | Templates
* and open the template in the editor. * and open the template in the editor.
*/ */
package inr.numass.trapping package ru.inr.mass.trapping
import org.apache.commons.math3.distribution.ExponentialDistribution import org.apache.commons.math3.distribution.ExponentialDistribution
import org.apache.commons.math3.geometry.euclidean.threed.Rotation import org.apache.commons.math3.geometry.euclidean.threed.Rotation
@ -11,6 +11,8 @@ import org.apache.commons.math3.random.RandomGenerator
import org.apache.commons.math3.util.FastMath.* import org.apache.commons.math3.util.FastMath.*
import org.apache.commons.math3.util.Pair import org.apache.commons.math3.util.Pair
import org.apache.commons.math3.util.Precision import org.apache.commons.math3.util.Precision
import ru.inr.mass.trapping.Scatter.counter
import ru.inr.mass.trapping.Scatter.debug
/** /**
* @author Darksnake * @author Darksnake

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@ -1,10 +1,10 @@
package inr.numass.trapping package ru.inr.mass.trapping
import java.time.Duration import java.time.Duration
import java.time.Instant import java.time.Instant
fun main(args: Array<String>) { fun main() {
//val z = doubleArrayOf(-1.736, -1.27, -0.754, -0.238, 0.278, 0.794, 1.31, 1.776) //val z = doubleArrayOf(-1.736, -1.27, -0.754, -0.238, 0.278, 0.794, 1.31, 1.776)
//val b = doubleArrayOf(3.70754, 0.62786, 0.60474, 0.60325, 0.60333, 0.60503, 0.6285, 3.70478) //val b = doubleArrayOf(3.70754, 0.62786, 0.60474, 0.60325, 0.60333, 0.60503, 0.6285, 3.70478)
// System.out.println("Press any key to start..."); // System.out.println("Press any key to start...");