C component for trapping

build.gradle

@@ -1,4 +1,5 @@
 apply plugin: 'java'
+apply plugin: 'c'
 apply plugin: 'idea'
 apply plugin: 'application'
 
@@ -17,7 +18,7 @@ tasks.withType(JavaCompile) {
     options.encoding = 'UTF-8'
 }
 
-tasks.withType(JavaExec){
+tasks.withType(JavaExec) {
     enableAssertions = true
 }
 
@@ -26,8 +27,8 @@ repositories {
 }
 
 dependencies {
-    compile group: 'org.apache.commons', name: 'commons-math3', version:'3.6.1'
+    compile group: 'org.apache.commons', name: 'commons-math3', version: '3.6.1'
-    testCompile group: 'junit', name: 'junit', version:'4.12'
+    testCompile group: 'junit', name: 'junit', version: '4.12'
 }
 
 task runTrap(type: JavaExec) {
@@ -38,3 +39,17 @@ task runTrap(type: JavaExec) {
     // arguments to pass to the application
     args 'D:\\Work\\Numass\\trapping\\trap.out'
 }
+
+//  native component
+
+model {
+    components {
+        scatter(NativeLibrarySpec)
+    }
+    toolChains {
+        gcc(Gcc) {
+            // Uncomment to use a GCC install that is not in the PATH
+            // path "/usr/bin/gcc"
+        }
+    }
+}

gradle/wrapper/gradle-wrapper.properties

@@ -1,4 +1,4 @@
-#Tue Jun 14 13:15:55 MSK 2016
+#Sun Jul 10 21:27:58 MSK 2016
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
 zipStoreBase=GRADLE_USER_HOME

src/scatter/c/random.c

@@ -0,0 +1,184 @@
+/* $Id$ */
+/*
+ * random.c
+ *
+ * written by Sebastian Voecking <seb.voeck@uni-muenster.de>
+ *
+ * For details see random.h
+ */
+
+#include "random.h"
+
+#include <stdlib.h>
+
+static int method = RANDOM_STDLIB;
+
+static int rand_seed=-1; // for random calculation
+static double get_random_1_cw();
+static void subrn(double* u, int len);
+static double random_james();
+
+void random_set_method(RandomMethode meth)
+{
+  method = meth;
+}
+
+double random_get()
+{
+  switch(method) {
+    case RANDOM_STDLIB:
+      return ((double)rand())/RAND_MAX;
+    case RANDOM_CW:
+      return get_random_1_cw();
+    case RANDOM_JAMES:
+      return random_james();
+    default:
+      return 0;
+  }
+}
+
+void random_seed(int seed)
+{
+  switch(method) {
+    case RANDOM_STDLIB:
+      srand(seed);
+      break;
+    case RANDOM_CW:
+      rand_seed = seed;
+      break;
+    case RANDOM_JAMES:
+      break;
+  }
+}
+
+double get_random_1_cw()
+     // function gives a random value between 0 and 1.
+     // NO imput value needed.
+     // numerical rec. version provided by Ch. Weinheimer
+{
+#define IA 16807
+#define IM 2147483647
+#define AM (1./IM)
+#define IQ 127773
+#define IR 2836
+#define NTAB 32
+#define NDIV (1+(IM-1)/NTAB)
+#define RNMX (1.-1.2e-7)
+  
+  int j, k;
+  static int iy=0, iv[NTAB];
+  double temp;
+  
+  if (rand_seed<=0 || !iy){
+    if (-rand_seed<1) rand_seed=1;
+    else rand_seed=-rand_seed;
+    for (j=NTAB+7; j>=0; j--){
+      k=rand_seed/IQ;
+      rand_seed=IA*(rand_seed-k*IQ)-IR*k;
+      if (rand_seed<0) rand_seed+=IM;
+      if (j<NTAB) iv[j]=rand_seed;
+    }
+    iy=iv[0];
+  }
+  k=rand_seed/IQ;
+  rand_seed=IA*(rand_seed-k*IQ)-IR*k;
+  if (rand_seed<0) rand_seed+=IM;
+  j=iy/NDIV;
+  iy=iv[j];
+  iv[j]=rand_seed;
+  if ((temp=AM*iy)>RNMX) return RNMX;
+  else return temp;
+  
+#undef IA
+#undef IM
+#undef AM
+#undef IQ
+#undef IR
+#undef NTAB
+#undef NDIV
+#undef RNMX
+}
+
+void subrn(double *u,int len)
+{
+// This subroutine computes random numbers u[1],...,u[len]
+// in the (0,1) interval. It uses the 0<IJKLRANDOM<900000000
+// integer as initialization seed.
+//  In the calling program the dimension
+// of the u[] vector should be larger than len (the u[0] value is
+// not used).
+// For each IJKLRANDOM
+// numbers the program computes completely independent random number
+// sequences (see: F. James, Comp. Phys. Comm. 60 (1990) 329, sec. 3.3).
+  //
+  // remark by T. Thuemmler:
+  // same random numbers appear each time one restarts the whole program
+  //
+  static long IJKLRANDOM=100;
+  static int iff=0;
+  static long ijkl,ij,kl,i,j,k,l,ii,jj,m,i97,j97,ivec;
+  static float s,t,uu[98],c,cd,cm,uni;
+  if(iff==0)
+  { ijkl=IJKLRANDOM;
+    if(ijkl<1 || ijkl>=900000000) ijkl=1;
+    ij=ijkl/30082;
+    kl=ijkl-30082*ij;
+    i=((ij/177)%177)+2;
+    j=(ij%177)+2;
+    k=((kl/169)%178)+1;
+    l=kl%169;
+    for(ii=1;ii<=97;ii++)
+    { s=0; t=0.5;
+      for(jj=1;jj<=24;jj++)
+      { m=(((i*j)%179)*k)%179;
+        i=j; j=k; k=m;
+        l=(53*l+1)%169;
+        if((l*m)%64 >= 32) s=s+t;
+        t=0.5*t;
+      }
+      uu[ii]=s;
+    }
+    c=362436./16777216.;
+    cd=7654321./16777216.;
+    cm=16777213./16777216.;
+    i97=97;
+    j97=33;
+    iff=1;
+  }
+  for(ivec=1;ivec<=len;ivec++)
+  { uni=uu[i97]-uu[j97];
+    if(uni<0.) uni=uni+1.;
+    uu[i97]=uni;
+    i97=i97-1;
+    if(i97==0) i97=97;
+    j97=j97-1;
+    if(j97==0) j97=97;
+    c=c-cd;
+    if(c<0.) c=c+cm;
+    uni=uni-c;
+    if(uni<0.) uni=uni+1.;
+    if(uni==0.)
+    { uni=uu[j97]*0.59604644775391e-07;
+      if(uni==0.) uni=0.35527136788005e-14;
+    }
+    u[ivec]=uni;
+  }
+
+  //  cout << endl<<  "random: " << u[1] << endl << flush;
+
+  return;
+}
+
+double random_james()
+{
+// This function computes 1 random number in the (0,1) interval,
+// using the subrn subroutine.
+  double u[2];
+  subrn(u,1);
+  return u[1];
+}
+
+///////////////////////////////////////////////////////////
+
+
+

src/scatter/headers/constants.h

@@ -0,0 +1,15 @@
+/* $Id$ */
+/*
+ * constants.h
+ *
+ * written by Sebastian Voecking <seb.voeck@uni-muenster.de>
+ *
+ * Constants which are used through out the scatter package
+ */
+
+#define C 299792458. /* velocity of light in SI units */
+#define CHARGEUNIT 1.602177e-19 /* electron charge (in SI, without sign) */
+#define BOLTZMANN 1.380658e-23 /* Boltzmann constant */
+#define ELECTRON_MASS 9.109389e-31 /* Electron mass */
+
+

src/scatter/headers/random.h

@@ -0,0 +1,33 @@
+/* $Id$ */
+/*
+ * random.h
+ *
+ * written by Sebastian Vц╤cking <seb.voeck@uni-muenster.de>
+ *
+ * The random module is a frontend for different random generators.
+ */
+
+/*
+ * The different generators
+ */
+typedef enum
+{
+  RANDOM_STDLIB, /* standard c random generator (the default one)*/
+  RANDOM_CW,
+  RANDOM_JAMES
+} RandomMethode;
+
+/*
+ * Selects a generator
+ */
+void random_set_method(RandomMethode method);
+
+/*
+ * Returns a number between 0 and 1 generated with the selected generator.
+ */
+double random_get();
+
+/*
+ * Seeds the random generator if it supports it.
+ */
+void random_seed(int seed);