Updates and fixes

# Conflicts:
#	build.gradle.kts
#	gradle.properties
#	gradle/wrapper/gradle-wrapper.properties
#	kotlin-js-store/yarn.lock
#	numass-analysis/build.gradle.kts
#	numass-data-proto/build.gradle.kts
#	numass-data-server/build.gradle.kts
#	numass-workspace/build.gradle.kts
#	numass-workspace/src/main/kotlin/ru/inr/mass/workspace/Numass.kt
#	numass-workspace/src/main/kotlin/ru/inr/mass/workspace/NumassPlugin.kt
#	settings.gradle.kts

build.gradle.kts

@@ -1,3 +1,6 @@
+import space.kscience.gradle.useApache2Licence
+import space.kscience.gradle.useSPCTeam
+
 plugins {
     id("space.kscience.gradle.project")
 }
@@ -10,17 +13,22 @@ allprojects {
     }
 
     group = "ru.inr.mass"
-    version = "0.1.3"
+    version = "0.1.4-dev-3"
 }
 
-val dataforgeVersion by extra("0.6.0-dev-15")
+val dataforgeVersion by extra("0.6.2")
-val tablesVersion: String by extra("0.2.0-dev-3")
+val tablesVersion: String by extra("0.2.1")
-val kmathVersion by extra("0.3.1-dev-6")
+val kmathVersion by extra("0.3.1")
-val visionForgeVersion: String by rootProject.extra("0.3.0-dev-4")
+val visionForgeVersion: String by rootProject.extra("0.3.0-dev-14")
 
 
 ksciencePublish {
-    space("https://maven.pkg.jetbrains.space/mipt-npm/p/numass/maven")
+    pom("https://spc.jetbrains.space/p/numass/repositories/numass/") {
+        useApache2Licence()
+        useSPCTeam()
+    }
+    space("https://maven.pkg.jetbrains.space/spc/p/numass/maven")
+    //repository("spc","https://maven.sciprog.center/spc")
 }
 
 apiValidation {

gradle.properties

@@ -5,11 +5,11 @@
 
 kotlin.code.style=official
 kotlin.mpp.stability.nowarn=true
-
+kotlin.js.compiler=ir
-kotlin.jupyter.add.scanner=false
 
 org.gradle.configureondemand=true
 org.gradle.parallel=true
 org.gradle.jvmargs=-XX:MaxMetaspaceSize=1G
 
-toolsVersion=0.13.3-kotlin-1.7.20
+toolsVersion=0.14.10-kotlin-1.9.0
+compose.version=1.5.3

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-7.5.1-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.3-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

numass-analysis/build.gradle.kts

@@ -8,7 +8,9 @@ val dataforgeVersion: String by rootProject.extra
 val kmathVersion: String by rootProject.extra
 val tablesVersion: String by rootProject.extra
 
-kotlin.sourceSets {
+kscience {
+    jvm()
+    js()
     commonMain {
         dependencies {
             api(projects.numass.numassDataModel)
@@ -20,7 +22,7 @@ kotlin.sourceSets {
         }
     }
 }
-
+//
 //kscience{
 //    useAtomic()
 //}

numass-data-model/build.gradle.kts

@@ -6,7 +6,11 @@ plugins {
 
 val dataforgeVersion: String by rootProject.extra
 
-kotlin.sourceSets {
+kscience{
+    jvm()
+    js()
+    useSerialization()
+
     commonMain {
         dependencies {
             api("space.kscience:dataforge-context:$dataforgeVersion")
@@ -14,15 +18,14 @@ kotlin.sourceSets {
             api("org.jetbrains.kotlinx:kotlinx-datetime:${space.kscience.gradle.KScienceVersions.dateTimeVersion}")
         }
     }
-    jvmMain{
+}
+
+kotlin.sourceSets{
+    getByName("jvmMain"){
         dependencies{
             api("ch.qos.logback:logback-classic:1.2.3")
         }
     }
 }
 
-kscience{
-    useSerialization()
-}
-
 

numass-data-proto/build.gradle.kts

@@ -1,6 +1,6 @@
 plugins {
     id("space.kscience.gradle.jvm")
-    id("com.squareup.wire") version "4.4.1"
+    id("com.squareup.wire") version "4.9.1"
     `maven-publish`
 }
 

numass-data-proto/src/gen/kotlin/ru/inr/mass/data/proto/Point.kt

@@ -4,6 +4,7 @@ package ru.inr.mass.`data`.proto
 
 import com.squareup.wire.*
 import com.squareup.wire.Syntax.PROTO_3
+import com.squareup.wire.internal.JvmField
 import com.squareup.wire.internal.immutableCopyOf
 import com.squareup.wire.internal.redactElements
 import okio.ByteString
@@ -19,6 +20,7 @@ public class Point(
     tag = 1,
     adapter = "ru.inr.mass.data.proto.Point${'$'}Channel#ADAPTER",
     label = WireField.Label.REPEATED,
+    schemaIndex = 0,
   )
   public val channels: List<Channel> = immutableCopyOf("channels", channels)
 
@@ -26,10 +28,10 @@ public class Point(
     message = "Shouldn't be used in Kotlin",
     level = DeprecationLevel.HIDDEN,
   )
-  public override fun newBuilder(): Nothing = throw
+  override fun newBuilder(): Nothing = throw
       AssertionError("Builders are deprecated and only available in a javaInterop build; see https://square.github.io/wire/wire_compiler/#kotlin")
 
-  public override fun equals(other: Any?): Boolean {
+  override fun equals(other: Any?): Boolean {
     if (other === this) return true
     if (other !is Point) return false
     if (unknownFields != other.unknownFields) return false
@@ -37,7 +39,7 @@ public class Point(
     return true
   }
 
-  public override fun hashCode(): Int {
+  override fun hashCode(): Int {
     var result = super.hashCode
     if (result == 0) {
       result = unknownFields.hashCode()
@@ -47,7 +49,7 @@ public class Point(
     return result
   }
 
-  public override fun toString(): String {
+  override fun toString(): String {
     val result = mutableListOf<String>()
     if (channels.isNotEmpty()) result += """channels=$channels"""
     return result.joinToString(prefix = "Point{", separator = ", ", postfix = "}")
@@ -66,23 +68,23 @@ public class Point(
       null, 
       "numass-proto.proto"
     ) {
-      public override fun encodedSize(`value`: Point): Int {
+      override fun encodedSize(`value`: Point): Int {
         var size = value.unknownFields.size
         size += Channel.ADAPTER.asRepeated().encodedSizeWithTag(1, value.channels)
         return size
       }
 
-      public override fun encode(writer: ProtoWriter, `value`: Point): Unit {
+      override fun encode(writer: ProtoWriter, `value`: Point) {
         Channel.ADAPTER.asRepeated().encodeWithTag(writer, 1, value.channels)
         writer.writeBytes(value.unknownFields)
       }
 
-      public override fun encode(writer: ReverseProtoWriter, `value`: Point): Unit {
+      override fun encode(writer: ReverseProtoWriter, `value`: Point) {
         writer.writeBytes(value.unknownFields)
         Channel.ADAPTER.asRepeated().encodeWithTag(writer, 1, value.channels)
       }
 
-      public override fun decode(reader: ProtoReader): Point {
+      override fun decode(reader: ProtoReader): Point {
         val channels = mutableListOf<Channel>()
         val unknownFields = reader.forEachTag { tag ->
           when (tag) {
@@ -96,7 +98,7 @@ public class Point(
         )
       }
 
-      public override fun redact(`value`: Point): Point = value.copy(
+      override fun redact(`value`: Point): Point = value.copy(
         channels = value.channels.redactElements(Channel.ADAPTER),
         unknownFields = ByteString.EMPTY
       )
@@ -116,6 +118,7 @@ public class Point(
       tag = 1,
       adapter = "com.squareup.wire.ProtoAdapter#UINT64",
       label = WireField.Label.OMIT_IDENTITY,
+      schemaIndex = 0,
     )
     public val id: Long = 0L,
     blocks: List<Block> = emptyList(),
@@ -128,6 +131,7 @@ public class Point(
       tag = 2,
       adapter = "ru.inr.mass.data.proto.Point${'$'}Channel${'$'}Block#ADAPTER",
       label = WireField.Label.REPEATED,
+      schemaIndex = 1,
     )
     public val blocks: List<Block> = immutableCopyOf("blocks", blocks)
 
@@ -135,10 +139,10 @@ public class Point(
       message = "Shouldn't be used in Kotlin",
       level = DeprecationLevel.HIDDEN,
     )
-    public override fun newBuilder(): Nothing = throw
+    override fun newBuilder(): Nothing = throw
         AssertionError("Builders are deprecated and only available in a javaInterop build; see https://square.github.io/wire/wire_compiler/#kotlin")
 
-    public override fun equals(other: Any?): Boolean {
+    override fun equals(other: Any?): Boolean {
       if (other === this) return true
       if (other !is Channel) return false
       if (unknownFields != other.unknownFields) return false
@@ -147,7 +151,7 @@ public class Point(
       return true
     }
 
-    public override fun hashCode(): Int {
+    override fun hashCode(): Int {
       var result = super.hashCode
       if (result == 0) {
         result = unknownFields.hashCode()
@@ -158,7 +162,7 @@ public class Point(
       return result
     }
 
-    public override fun toString(): String {
+    override fun toString(): String {
       val result = mutableListOf<String>()
       result += """id=$id"""
       if (blocks.isNotEmpty()) result += """blocks=$blocks"""
@@ -181,26 +185,26 @@ public class Point(
         null, 
         "numass-proto.proto"
       ) {
-        public override fun encodedSize(`value`: Channel): Int {
+        override fun encodedSize(`value`: Channel): Int {
           var size = value.unknownFields.size
           if (value.id != 0L) size += ProtoAdapter.UINT64.encodedSizeWithTag(1, value.id)
           size += Block.ADAPTER.asRepeated().encodedSizeWithTag(2, value.blocks)
           return size
         }
 
-        public override fun encode(writer: ProtoWriter, `value`: Channel): Unit {
+        override fun encode(writer: ProtoWriter, `value`: Channel) {
           if (value.id != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 1, value.id)
           Block.ADAPTER.asRepeated().encodeWithTag(writer, 2, value.blocks)
           writer.writeBytes(value.unknownFields)
         }
 
-        public override fun encode(writer: ReverseProtoWriter, `value`: Channel): Unit {
+        override fun encode(writer: ReverseProtoWriter, `value`: Channel) {
           writer.writeBytes(value.unknownFields)
           Block.ADAPTER.asRepeated().encodeWithTag(writer, 2, value.blocks)
           if (value.id != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 1, value.id)
         }
 
-        public override fun decode(reader: ProtoReader): Channel {
+        override fun decode(reader: ProtoReader): Channel {
           var id: Long = 0L
           val blocks = mutableListOf<Block>()
           val unknownFields = reader.forEachTag { tag ->
@@ -217,7 +221,7 @@ public class Point(
           )
         }
 
-        public override fun redact(`value`: Channel): Channel = value.copy(
+        override fun redact(`value`: Channel): Channel = value.copy(
           blocks = value.blocks.redactElements(Block.ADAPTER),
           unknownFields = ByteString.EMPTY
         )
@@ -237,6 +241,7 @@ public class Point(
         tag = 1,
         adapter = "com.squareup.wire.ProtoAdapter#UINT64",
         label = WireField.Label.OMIT_IDENTITY,
+        schemaIndex = 0,
       )
       public val time: Long = 0L,
       frames: List<Frame> = emptyList(),
@@ -247,6 +252,7 @@ public class Point(
         tag = 3,
         adapter = "ru.inr.mass.data.proto.Point${'$'}Channel${'$'}Block${'$'}Events#ADAPTER",
         label = WireField.Label.OMIT_IDENTITY,
+        schemaIndex = 2,
       )
       public val events: Events? = null,
       /**
@@ -256,6 +262,7 @@ public class Point(
         tag = 4,
         adapter = "com.squareup.wire.ProtoAdapter#UINT64",
         label = WireField.Label.OMIT_IDENTITY,
+        schemaIndex = 3,
       )
       public val length: Long = 0L,
       /**
@@ -266,6 +273,7 @@ public class Point(
         adapter = "com.squareup.wire.ProtoAdapter#UINT64",
         label = WireField.Label.OMIT_IDENTITY,
         jsonName = "binSize",
+        schemaIndex = 4,
       )
       public val bin_size: Long = 0L,
       unknownFields: ByteString = ByteString.EMPTY,
@@ -277,6 +285,7 @@ public class Point(
         tag = 2,
         adapter = "ru.inr.mass.data.proto.Point${'$'}Channel${'$'}Block${'$'}Frame#ADAPTER",
         label = WireField.Label.REPEATED,
+        schemaIndex = 1,
       )
       public val frames: List<Frame> = immutableCopyOf("frames", frames)
 
@@ -284,10 +293,10 @@ public class Point(
         message = "Shouldn't be used in Kotlin",
         level = DeprecationLevel.HIDDEN,
       )
-      public override fun newBuilder(): Nothing = throw
+      override fun newBuilder(): Nothing = throw
           AssertionError("Builders are deprecated and only available in a javaInterop build; see https://square.github.io/wire/wire_compiler/#kotlin")
 
-      public override fun equals(other: Any?): Boolean {
+      override fun equals(other: Any?): Boolean {
         if (other === this) return true
         if (other !is Block) return false
         if (unknownFields != other.unknownFields) return false
@@ -299,7 +308,7 @@ public class Point(
         return true
       }
 
-      public override fun hashCode(): Int {
+      override fun hashCode(): Int {
         var result = super.hashCode
         if (result == 0) {
           result = unknownFields.hashCode()
@@ -313,7 +322,7 @@ public class Point(
         return result
       }
 
-      public override fun toString(): String {
+      override fun toString(): String {
         val result = mutableListOf<String>()
         result += """time=$time"""
         if (frames.isNotEmpty()) result += """frames=$frames"""
@@ -342,7 +351,7 @@ public class Point(
           null, 
           "numass-proto.proto"
         ) {
-          public override fun encodedSize(`value`: Block): Int {
+          override fun encodedSize(`value`: Block): Int {
             var size = value.unknownFields.size
             if (value.time != 0L) size += ProtoAdapter.UINT64.encodedSizeWithTag(1, value.time)
             size += Frame.ADAPTER.asRepeated().encodedSizeWithTag(2, value.frames)
@@ -353,7 +362,7 @@ public class Point(
             return size
           }
 
-          public override fun encode(writer: ProtoWriter, `value`: Block): Unit {
+          override fun encode(writer: ProtoWriter, `value`: Block) {
             if (value.time != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 1, value.time)
             Frame.ADAPTER.asRepeated().encodeWithTag(writer, 2, value.frames)
             if (value.events != null) Events.ADAPTER.encodeWithTag(writer, 3, value.events)
@@ -362,7 +371,7 @@ public class Point(
             writer.writeBytes(value.unknownFields)
           }
 
-          public override fun encode(writer: ReverseProtoWriter, `value`: Block): Unit {
+          override fun encode(writer: ReverseProtoWriter, `value`: Block) {
             writer.writeBytes(value.unknownFields)
             if (value.bin_size != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 5, value.bin_size)
             if (value.length != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 4, value.length)
@@ -371,7 +380,7 @@ public class Point(
             if (value.time != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 1, value.time)
           }
 
-          public override fun decode(reader: ProtoReader): Block {
+          override fun decode(reader: ProtoReader): Block {
             var time: Long = 0L
             val frames = mutableListOf<Frame>()
             var events: Events? = null
@@ -397,7 +406,7 @@ public class Point(
             )
           }
 
-          public override fun redact(`value`: Block): Block = value.copy(
+          override fun redact(`value`: Block): Block = value.copy(
             frames = value.frames.redactElements(Frame.ADAPTER),
             events = value.events?.let(Events.ADAPTER::redact),
             unknownFields = ByteString.EMPTY
@@ -418,6 +427,7 @@ public class Point(
           tag = 1,
           adapter = "com.squareup.wire.ProtoAdapter#UINT64",
           label = WireField.Label.OMIT_IDENTITY,
+          schemaIndex = 0,
         )
         public val time: Long = 0L,
         /**
@@ -428,6 +438,7 @@ public class Point(
           adapter = "com.squareup.wire.ProtoAdapter#BYTES",
           label = WireField.Label.OMIT_IDENTITY,
           declaredName = "data",
+          schemaIndex = 1,
         )
         public val data_: ByteString = ByteString.EMPTY,
         unknownFields: ByteString = ByteString.EMPTY,
@@ -436,10 +447,10 @@ public class Point(
           message = "Shouldn't be used in Kotlin",
           level = DeprecationLevel.HIDDEN,
         )
-        public override fun newBuilder(): Nothing = throw
+        override fun newBuilder(): Nothing = throw
             AssertionError("Builders are deprecated and only available in a javaInterop build; see https://square.github.io/wire/wire_compiler/#kotlin")
 
-        public override fun equals(other: Any?): Boolean {
+        override fun equals(other: Any?): Boolean {
           if (other === this) return true
           if (other !is Frame) return false
           if (unknownFields != other.unknownFields) return false
@@ -448,7 +459,7 @@ public class Point(
           return true
         }
 
-        public override fun hashCode(): Int {
+        override fun hashCode(): Int {
           var result = super.hashCode
           if (result == 0) {
             result = unknownFields.hashCode()
@@ -459,7 +470,7 @@ public class Point(
           return result
         }
 
-        public override fun toString(): String {
+        override fun toString(): String {
           val result = mutableListOf<String>()
           result += """time=$time"""
           result += """data_=$data_"""
@@ -482,7 +493,7 @@ public class Point(
             null, 
             "numass-proto.proto"
           ) {
-            public override fun encodedSize(`value`: Frame): Int {
+            override fun encodedSize(`value`: Frame): Int {
               var size = value.unknownFields.size
               if (value.time != 0L) size += ProtoAdapter.UINT64.encodedSizeWithTag(1, value.time)
               if (value.data_ != ByteString.EMPTY) size += ProtoAdapter.BYTES.encodedSizeWithTag(2,
@@ -490,21 +501,21 @@ public class Point(
               return size
             }
 
-            public override fun encode(writer: ProtoWriter, `value`: Frame): Unit {
+            override fun encode(writer: ProtoWriter, `value`: Frame) {
               if (value.time != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 1, value.time)
               if (value.data_ != ByteString.EMPTY) ProtoAdapter.BYTES.encodeWithTag(writer, 2,
                   value.data_)
               writer.writeBytes(value.unknownFields)
             }
 
-            public override fun encode(writer: ReverseProtoWriter, `value`: Frame): Unit {
+            override fun encode(writer: ReverseProtoWriter, `value`: Frame) {
               writer.writeBytes(value.unknownFields)
               if (value.data_ != ByteString.EMPTY) ProtoAdapter.BYTES.encodeWithTag(writer, 2,
                   value.data_)
               if (value.time != 0L) ProtoAdapter.UINT64.encodeWithTag(writer, 1, value.time)
             }
 
-            public override fun decode(reader: ProtoReader): Frame {
+            override fun decode(reader: ProtoReader): Frame {
               var time: Long = 0L
               var data_: ByteString = ByteString.EMPTY
               val unknownFields = reader.forEachTag { tag ->
@@ -521,7 +532,7 @@ public class Point(
               )
             }
 
-            public override fun redact(`value`: Frame): Frame = value.copy(
+            override fun redact(`value`: Frame): Frame = value.copy(
               unknownFields = ByteString.EMPTY
             )
           }
@@ -547,6 +558,7 @@ public class Point(
           tag = 1,
           adapter = "com.squareup.wire.ProtoAdapter#UINT64",
           label = WireField.Label.PACKED,
+          schemaIndex = 0,
         )
         public val times: List<Long> = immutableCopyOf("times", times)
 
@@ -557,6 +569,7 @@ public class Point(
           tag = 2,
           adapter = "com.squareup.wire.ProtoAdapter#UINT64",
           label = WireField.Label.PACKED,
+          schemaIndex = 1,
         )
         public val amplitudes: List<Long> = immutableCopyOf("amplitudes", amplitudes)
 
@@ -564,10 +577,10 @@ public class Point(
           message = "Shouldn't be used in Kotlin",
           level = DeprecationLevel.HIDDEN,
         )
-        public override fun newBuilder(): Nothing = throw
+        override fun newBuilder(): Nothing = throw
             AssertionError("Builders are deprecated and only available in a javaInterop build; see https://square.github.io/wire/wire_compiler/#kotlin")
 
-        public override fun equals(other: Any?): Boolean {
+        override fun equals(other: Any?): Boolean {
           if (other === this) return true
           if (other !is Events) return false
           if (unknownFields != other.unknownFields) return false
@@ -576,7 +589,7 @@ public class Point(
           return true
         }
 
-        public override fun hashCode(): Int {
+        override fun hashCode(): Int {
           var result = super.hashCode
           if (result == 0) {
             result = unknownFields.hashCode()
@@ -587,7 +600,7 @@ public class Point(
           return result
         }
 
-        public override fun toString(): String {
+        override fun toString(): String {
           val result = mutableListOf<String>()
           if (times.isNotEmpty()) result += """times=$times"""
           if (amplitudes.isNotEmpty()) result += """amplitudes=$amplitudes"""
@@ -610,43 +623,61 @@ public class Point(
             null, 
             "numass-proto.proto"
           ) {
-            public override fun encodedSize(`value`: Events): Int {
+            override fun encodedSize(`value`: Events): Int {
               var size = value.unknownFields.size
               size += ProtoAdapter.UINT64.asPacked().encodedSizeWithTag(1, value.times)
               size += ProtoAdapter.UINT64.asPacked().encodedSizeWithTag(2, value.amplitudes)
               return size
             }
 
-            public override fun encode(writer: ProtoWriter, `value`: Events): Unit {
+            override fun encode(writer: ProtoWriter, `value`: Events) {
               ProtoAdapter.UINT64.asPacked().encodeWithTag(writer, 1, value.times)
               ProtoAdapter.UINT64.asPacked().encodeWithTag(writer, 2, value.amplitudes)
               writer.writeBytes(value.unknownFields)
             }
 
-            public override fun encode(writer: ReverseProtoWriter, `value`: Events): Unit {
+            override fun encode(writer: ReverseProtoWriter, `value`: Events) {
               writer.writeBytes(value.unknownFields)
               ProtoAdapter.UINT64.asPacked().encodeWithTag(writer, 2, value.amplitudes)
               ProtoAdapter.UINT64.asPacked().encodeWithTag(writer, 1, value.times)
             }
 
-            public override fun decode(reader: ProtoReader): Events {
+            override fun decode(reader: ProtoReader): Events {
-              val times = mutableListOf<Long>()
+              var times: MutableList<Long>? = null
-              val amplitudes = mutableListOf<Long>()
+              var amplitudes: MutableList<Long>? = null
               val unknownFields = reader.forEachTag { tag ->
                 when (tag) {
-                  1 -> times.add(ProtoAdapter.UINT64.decode(reader))
+                  1 -> {
-                  2 -> amplitudes.add(ProtoAdapter.UINT64.decode(reader))
+                    if (times == null) {
+                      val minimumByteSize = 1
+                      val initialCapacity = (reader.nextFieldMinLengthInBytes() / minimumByteSize)
+                        .coerceAtMost(Int.MAX_VALUE.toLong())
+                        .toInt()
+                      times = ArrayList(initialCapacity)
+                    }
+                    times!!.add(ProtoAdapter.UINT64.decode(reader))
+                  }
+                  2 -> {
+                    if (amplitudes == null) {
+                      val minimumByteSize = 1
+                      val initialCapacity = (reader.nextFieldMinLengthInBytes() / minimumByteSize)
+                        .coerceAtMost(Int.MAX_VALUE.toLong())
+                        .toInt()
+                      amplitudes = ArrayList(initialCapacity)
+                    }
+                    amplitudes!!.add(ProtoAdapter.UINT64.decode(reader))
+                  }
                   else -> reader.readUnknownField(tag)
                 }
               }
               return Events(
-                times = times,
+                times = times ?: listOf(),
-                amplitudes = amplitudes,
+                amplitudes = amplitudes ?: listOf(),
                 unknownFields = unknownFields
               )
             }
 
-            public override fun redact(`value`: Events): Events = value.copy(
+            override fun redact(`value`: Events): Events = value.copy(
               unknownFields = ByteString.EMPTY
             )
           }

numass-data-proto/src/main/kotlin/ru/inr/mass/data/proto/NumassProtoPlugin.kt

@@ -20,7 +20,6 @@ import java.nio.file.Path
 import kotlin.io.path.exists
 import kotlin.io.path.isDirectory
 import kotlin.io.path.relativeTo
-import kotlin.reflect.KClass
 
 public class NumassProtoPlugin : AbstractPlugin() {
     public val io: IOPlugin by require(IOPlugin)
@@ -35,7 +34,6 @@ public class NumassProtoPlugin : AbstractPlugin() {
     public companion object : PluginFactory<NumassProtoPlugin> {
         override fun build(context: Context, meta: Meta): NumassProtoPlugin = NumassProtoPlugin()
         override val tag: PluginTag = PluginTag("numass-proto", group = "ru.inr.mass")
-        override val type: KClass<out NumassProtoPlugin> = NumassProtoPlugin::class
     }
 }
 

numass-data-proto/src/main/kotlin/ru/inr/mass/data/proto/TaggedNumassEnvelopeFormat.kt

@@ -39,24 +39,8 @@ public class TaggedNumassEnvelopeFormat(private val io: IOPlugin) : EnvelopeForm
         writeRawString(END_SEQUENCE)
     }
 
-    override fun writeEnvelope(
+    override fun writeObject(output: Output, obj: Envelope) {
-        output: Output,
-        envelope: Envelope,
-        metaFormatFactory: MetaFormatFactory,
-        formatMeta: Meta,
-    ) {
         error("Don't write legacy formats")
-//        val metaFormat = metaFormatFactory.invoke(formatMeta, io.context)
-//        val metaBytes = metaFormat.toBinary(envelope.meta)
-//        val actualSize: ULong = (envelope.data?.size ?: 0).toULong()
-//        val tag = Tag(metaFormatFactory.key, metaBytes.size.toUInt() + 2u, actualSize)
-//        output.writeBinary(tag.toBinary())
-//        output.writeBinary(metaBytes)
-//        output.writeRawString("\r\n")
-//        envelope.data?.let {
-//            output.writeBinary(it)
-//        }
-//        output.flush()
     }
 
     /**
@@ -68,31 +52,30 @@ public class TaggedNumassEnvelopeFormat(private val io: IOPlugin) : EnvelopeForm
     override fun readObject(input: Input): Envelope {
         val tag = input.readTag()
 
-        val metaFormat = io.resolveMetaFormat(tag.metaFormatKey)
+        val metaFormat = io.resolveMetaFormat(tag.metaFormatKey) ?: JsonMetaFormat
-            ?: error("Meta format with key ${tag.metaFormatKey} not found")
 
         val meta: Meta = metaFormat.readObjectFrom(input.readBinary(tag.metaSize.toInt()))
 
         val data = input.readBinary(tag.dataSize.toInt())
 
-        return SimpleEnvelope(meta, data)
+        return Envelope(meta, data)
-    }
-
-    override fun readPartial(input: Input): PartialEnvelope {
-        val tag = input.readTag()
-
-        val metaFormat = if (tag.metaFormatKey == 1.toShort()) {
-            JsonMetaFormat
-        } else {
-            io.resolveMetaFormat(tag.metaFormatKey)
-                ?: error("Meta format with key ${tag.metaFormatKey} not found")
-        }
-
-        val meta: Meta = metaFormat.readObjectFrom(input.readBinary(tag.metaSize.toInt()))
-
-
-        return PartialEnvelope(meta, 30 + tag.metaSize.toInt(), tag.dataSize)
     }
+//
+//    override fun readPartial(input: Input): PartialEnvelope {
+//        val tag = input.readTag()
+//
+//        val metaFormat = if (tag.metaFormatKey == 1.toShort()) {
+//            JsonMetaFormat
+//        } else {
+//            io.resolveMetaFormat(tag.metaFormatKey)
+//                ?: error("Meta format with key ${tag.metaFormatKey} not found")
+//        }
+//
+//        val meta: Meta = metaFormat.readObjectFrom(input.readBinary(tag.metaSize.toInt()))
+//
+//
+//        return PartialEnvelope(meta, 30 + tag.metaSize.toInt(), tag.dataSize)
+//    }
 
     private data class Tag(
         val metaFormatKey: Short,
@@ -149,23 +132,11 @@ public class TaggedNumassEnvelopeFormat(private val io: IOPlugin) : EnvelopeForm
 
         private val default by lazy { invoke() }
 
-        override fun readPartial(input: Input): PartialEnvelope =
+        override fun writeObject(output: Output, obj: Envelope) {
-            default.run { readPartial(input) }
+            error("Don't write legacy formats")
-
-        override fun writeEnvelope(
-            output: Output,
-            envelope: Envelope,
-            metaFormatFactory: MetaFormatFactory,
-            formatMeta: Meta,
-        ): Unit = default.run {
-            writeEnvelope(
-                output,
-                envelope,
-                metaFormatFactory,
-                formatMeta
-            )
         }
 
+
         override fun readObject(input: Input): Envelope = default.readObject(input)
     }
 }

numass-data-server/build.gradle.kts

@@ -1,5 +1,6 @@
 plugins {
     id("space.kscience.gradle.mpp")
+    id("org.jetbrains.compose")
     `maven-publish`
 }
 
@@ -7,17 +8,17 @@ val visionForgeVersion: String by rootProject.extra
 
 val production: Boolean by rootProject.extra(true)
 
-kotlin {
+
-    js(IR) {
+kscience {
-        browser {
+    fullStack("js/numass-web.js")
-            webpackTask {
+
-                this.outputFileName = "js/numass-web.js"
+    useSerialization {
-            }
+        json()
-        }
-        binaries.executable()
     }
 
-    sourceSets {
+    useContextReceivers()
+    useKtor()
+
     commonMain {
         dependencies {
             implementation(project(":numass-data-model"))
@@ -25,36 +26,23 @@ kotlin {
             implementation("space.kscience:visionforge-plotly:$visionForgeVersion")
         }
     }
-        jvmMain {
+}
+
+kotlin{
+    sourceSets{
+        getByName("jvmMain"){
             dependencies{
+                implementation(compose.runtime)
                 implementation(project(":numass-data-proto"))
-                implementation("space.kscience:visionforge-server:$visionForgeVersion")
+                implementation("io.ktor:ktor-server-cio")
+                implementation("io.ktor:ktor-server-html-builder")
+                implementation("space.kscience:visionforge-plotly:$visionForgeVersion")
             }
         }
-
+        getByName("jsMain"){
-    }
+            dependencies{
-}
+                implementation(compose.html.core)
-
-afterEvaluate {
-    val distributionTask = if (production) {
-        tasks.getByName("jsBrowserDistribution")
-    } else {
-        tasks.getByName("jsBrowserDevelopmentExecutableDistribution")
-    }
-
-    tasks.getByName<ProcessResources>("jvmProcessResources") {
-        dependsOn(distributionTask)
-        from(distributionTask)
-        include("**/*.js")
-        if (production) {
-            include("**/*.map")
             }
         }
     }
-
-kscience {
-    useSerialization {
-        json()
-    }
-    withContextReceivers()
 }

numass-data-server/src/commonMain/kotlin/ru/inr/mass/data/server/NumassCommonPlugin.kt

@@ -9,7 +9,6 @@ import space.kscience.dataforge.context.PluginTag
 import space.kscience.dataforge.meta.Meta
 import space.kscience.visionforge.Vision
 import space.kscience.visionforge.VisionPlugin
-import kotlin.reflect.KClass
 
 public class NumassCommonPlugin(meta: Meta = Meta.EMPTY) : VisionPlugin(meta) {
     override val tag: PluginTag get() = Companion.tag
@@ -18,7 +17,6 @@ public class NumassCommonPlugin(meta: Meta = Meta.EMPTY) : VisionPlugin(meta) {
 
     public companion object : PluginFactory<NumassCommonPlugin> {
         override val tag: PluginTag = PluginTag("numass.common", "ru.inr.mass")
-        override val type: KClass<NumassCommonPlugin> = NumassCommonPlugin::class
 
         override fun build(context: Context, meta: Meta): NumassCommonPlugin = NumassCommonPlugin()
 

numass-data-server/src/jsMain/kotlin/ru/inr/mass/data/server/NumassJsPlugin.kt

@@ -12,16 +12,16 @@ import space.kscience.dataforge.names.Name
 import space.kscience.dataforge.names.asName
 import space.kscience.plotly.models.LineShape
 import space.kscience.plotly.models.ScatterMode
-import space.kscience.plotly.plotElement
+import space.kscience.plotly.plotDiv
 import space.kscience.plotly.scatter
 import space.kscience.visionforge.ElementVisionRenderer
+import space.kscience.visionforge.JsVisionClient
 import space.kscience.visionforge.Vision
 import space.kscience.visionforge.VisionClient
 import space.kscience.visionforge.plotly.PlotlyPlugin
-import kotlin.reflect.KClass
 
 public class NumassJsPlugin : AbstractPlugin(), ElementVisionRenderer {
-    public val client: VisionClient by require(VisionClient)
+    public val client: VisionClient by require(JsVisionClient)
     public val numassCommon: NumassCommonPlugin by require(NumassCommonPlugin)
     public val plotly: PlotlyPlugin by require(PlotlyPlugin)
 
@@ -37,7 +37,7 @@ public class NumassJsPlugin : AbstractPlugin(), ElementVisionRenderer {
         else -> super.content(target)
     }
 
-    override fun render(element: Element, vision: Vision, meta: Meta) {
+    override fun render(element: Element, name: Name, vision: Vision, meta: Meta) {
         when (vision) {
             is VisionOfNumassHv -> element.append {
                 h1 { +"HV" }
@@ -60,11 +60,11 @@ public class NumassJsPlugin : AbstractPlugin(), ElementVisionRenderer {
 
             is VisionOfNumassPoint -> element.append {
                 h1 { +"Point" }
-                plotElement {
+                plotDiv {
                     vision.spectra.forEach { (channel, spectrum) ->
                         val pairs = spectrum.entries.sortedBy { it.key }
                         scatter {
-                            name = channel
+                            this.name = channel
                             mode = ScatterMode.lines
                             line {
                                 shape = LineShape.hv
@@ -83,8 +83,6 @@ public class NumassJsPlugin : AbstractPlugin(), ElementVisionRenderer {
 
     public companion object : PluginFactory<NumassJsPlugin> {
         override val tag: PluginTag = PluginTag("numass.js", "ru.inr.mass")
-        override val type: KClass<NumassJsPlugin> = NumassJsPlugin::class
-
         override fun build(context: Context, meta: Meta): NumassJsPlugin = NumassJsPlugin()
 
     }

numass-data-server/src/jsMain/kotlin/ru/inr/mass/data/server/NumassViewerApplication.kt

@@ -0,0 +1,27 @@
+package ru.inr.mass.data.server
+
+import org.jetbrains.compose.web.dom.Div
+import org.jetbrains.compose.web.renderComposable
+import org.w3c.dom.Document
+import space.kscience.dataforge.context.Context
+import space.kscience.visionforge.Application
+
+public class NumassViewerApplication : Application {
+    private val context = Context("NumassViewer") {
+        plugin(NumassJsPlugin)
+    }
+
+    override fun start(document: Document, state: Map<String, Any>) {
+        renderComposable(rootElementId = "application") {
+            Div({ classes("container") }) {
+                Div({ classes("row") })
+                Div({ classes("col-md-3") }) {
+
+                }
+                Div({ classes("col-md-9") }) {
+
+                }
+            }
+        }
+    }
+}

numass-data-server/src/jvmMain/kotlin/ru/inr/mass/data/server/server.kt

@@ -1,15 +1,20 @@
 package ru.inr.mass.data.server
 
+import io.ktor.http.ContentType
 import io.ktor.http.HttpStatusCode
-import io.ktor.http.URLBuilder
+import io.ktor.server.application.Application
 import io.ktor.server.application.call
 import io.ktor.server.cio.CIO
 import io.ktor.server.engine.embeddedServer
+import io.ktor.server.html.respondHtml
+import io.ktor.server.http.content.resources
 import io.ktor.server.response.respondText
 import io.ktor.server.routing.get
 import io.ktor.server.routing.routing
 import kotlinx.coroutines.Dispatchers
+import kotlinx.coroutines.runBlocking
 import kotlinx.coroutines.withContext
+import kotlinx.html.*
 import ru.inr.mass.data.api.NumassPoint
 import ru.inr.mass.data.proto.NumassDirectorySet
 import ru.inr.mass.data.proto.NumassProtoPlugin
@@ -22,12 +27,15 @@ import space.kscience.dataforge.names.Name
 import space.kscience.dataforge.names.NameToken
 import space.kscience.dataforge.names.cutLast
 import space.kscience.dataforge.names.lastOrNull
-import space.kscience.visionforge.server.close
-import space.kscience.visionforge.server.openInBrowser
-import space.kscience.visionforge.server.visionServer
 
 
-public suspend fun main() {
+public fun main() {
+    val port = 7777
+    val host = "localhost"
+    embeddedServer(CIO, port, host, module = Application::numassModule).start()
+}
+
+public fun Application.numassModule(repositoryName: String = "D:\\Work\\Numass\\data\\test") {
     val context = Context("Numass") {
         plugin(NumassProtoPlugin)
         plugin(NumassCommonPlugin)
@@ -37,23 +45,47 @@ public suspend fun main() {
     val numassCommon = context.fetch(NumassCommonPlugin)
 
     val visionManager = numassCommon.visionManager
+    val repository: DataTree<NumassDirectorySet> = runBlocking { numassProto.readRepository(repositoryName) }
 
-    val repositroyName = "D:\\Work\\Numass\\data\\test"
-
-    val port = 7777
-    val host = "localhost"
-
-    val url = URLBuilder(host = host, port = port).build()
-
-    val repository: DataTree<NumassDirectorySet> = numassProto.readRepository(repositroyName)
-
-    val visionOfNumassRepository = VisionOfNumassRepository(Name.EMPTY, repository)
-
-    val server = context.embeddedServer(CIO, port, host) {
     routing {
+        resources()
+
+        get("/") {
+            call.respondHtml {
+                head {
+                    meta { charset = "utf-8" }
+                    meta {
+                        name = "viewport"
+                        content = "width=device-width, initial-scale=1"
+                    }
+                    title("Numass Data Viewer")
+                    link {
+                        href = "https://cdn.jsdelivr.net/npm/bootstrap@5.2.3/dist/css/bootstrap.min.css"
+                        rel = "stylesheet"
+                        attributes["integrity"] =
+                            "sha384-rbsA2VBKQhggwzxH7pPCaAqO46MgnOM80zW1RWuH61DGLwZJEdK2Kadq2F9CUG65"
+                        attributes["crossorigin"] = "anonymous"
+                    }
+                }
+                body {
+                    div {
+                        id = "application"
+                    }
+                    script {
+                        src = "js/numass-web.js"
+                    }
+                    script {
+                        src = "https://cdn.jsdelivr.net/npm/bootstrap@5.2.3/dist/js/bootstrap.bundle.min.js"
+                        integrity = "sha384-kenU1KFdBIe4zVF0s0G1M5b4hcpxyD9F7jL+jjXkk+Q2h455rYXK/7HAuoJl+0I4"
+                        attributes["crossorigin"] = "anonymous"
+                    }
+                }
+            }
+        }
+
         get("/repository") {
-                call.respondText {
+            call.respondText(ContentType.Application.Json) {
-                    visionManager.encodeToString(visionOfNumassRepository)
+                visionManager.encodeToString(VisionOfNumassRepository(Name.EMPTY, repository))
             }
         }
 
@@ -72,7 +104,7 @@ public suspend fun main() {
                 return@get
             }
 
-                call.respondText {
+            call.respondText(ContentType.Application.Json) {
                 visionManager.encodeToString(VisionOfNumassSet(setName, set))
             }
         }
@@ -101,32 +133,10 @@ public suspend fun main() {
                 call.respondText(status = HttpStatusCode.NotFound) { "A point with name $setName/$pointIndex not found in the repository" }
                 return@get
             }
-                call.respondText {
+            call.respondText(ContentType.Application.Json) {
                 visionManager.encodeToString(point.toVision())
             }
         }
     }
-        visionServer(numassCommon.visionManager, url)
+    //serveVisionData(VisionRoute("/visions", visionManager))
-    }.start()
-
-//    val server = context.visionManager.serve {
-//        header("numass", VisionPage.scriptHeader("js/numass-web.js"))
-//        page {
-//            div("flex-column") {
-//                h1 { +"Visionforge file demo" }
-//                vision { visionOfNumass }
-//            }
-//        }
-//    }
-
-    server.openInBrowser()
-
-
-    println("Enter 'exit' to close server")
-    while (readLine() != "exit") {
-        //
-    }
-
-    server.close()
-
 }

numass-data-server/src/jvmMain/kotlin/ru/inr/mass/data/server/serverExtensions.kt

@@ -2,11 +2,8 @@ package ru.inr.mass.data.server
 
 import space.kscience.dataforge.context.Context
 import space.kscience.dataforge.misc.DFExperimental
-import space.kscience.visionforge.html.HtmlVisionFragment
+import space.kscience.visionforge.html.*
-import space.kscience.visionforge.html.ResourceLocation
+import space.kscience.visionforge.visionManager
-import space.kscience.visionforge.html.VisionPage
-import space.kscience.visionforge.html.importScriptHeader
-import space.kscience.visionforge.makeFile
 import java.awt.Desktop
 import java.nio.file.Path
 
@@ -19,7 +16,7 @@ public fun Context.makeNumassWebFile(
     show: Boolean = true,
     content: HtmlVisionFragment,
 ): Unit {
-    val actualPath = VisionPage(this, content = content).makeFile(path) { actualPath: Path ->
+    val actualPath = VisionPage(visionManager, content = content).makeFile(path) { actualPath: Path ->
         mapOf(
             "title" to VisionPage.title(title),
             "numassWeb" to VisionPage.importScriptHeader("js/numass-web.js", resourceLocation, actualPath)

numass-model/build.gradle.kts

@@ -7,7 +7,9 @@ plugins {
 val dataforgeVersion: String by rootProject.extra
 val kmathVersion: String by rootProject.extra
 
-kotlin.sourceSets {
+kscience{
+    jvm()
+    js()
     commonMain {
         dependencies {
             api("space.kscience:dataforge-context:$dataforgeVersion")
@@ -15,7 +17,10 @@ kotlin.sourceSets {
             api("space.kscience:kmath-functions:$kmathVersion")
         }
     }
-    jvmMain {
+}
+
+kotlin.sourceSets{
+    getByName("jvmMain"){
         dependencies {
             api("space.kscience:kmath-commons:$kmathVersion")
             api("ch.qos.logback:logback-classic:1.2.3")

numass-model/src/commonMain/kotlin/ru/inr/mass/models/FSS.kt

@@ -15,10 +15,10 @@
  */
 package ru.inr.mass.models
 
+import space.kscience.kmath.UnstableKMathAPI
 import space.kscience.kmath.data.ColumnarData
 import space.kscience.kmath.expressions.Symbol
 import space.kscience.kmath.expressions.symbol
-import space.kscience.kmath.misc.UnstableKMathAPI
 import space.kscience.kmath.structures.Buffer
 
 

numass-model/src/commonMain/kotlin/ru/inr/mass/models/NBkgSpectrum.kt

@@ -32,8 +32,8 @@ public class NBkgSpectrum(public val source: Spectrum) : DifferentiableSpectrum
     override fun derivativeOrNull(symbols: List<Symbol>): Spectrum? = when {
         symbols.isEmpty() -> this
         symbols.size == 1 -> when (symbols.first()) {
-            norm -> Spectrum { x, arguments -> source(x, arguments) + (arguments[bkg] ?: 0.0) }
+            norm -> Spectrum { x, arguments -> source(x, arguments) }
-            bkg -> Spectrum { x, arguments -> (arguments[norm] ?: 1.0) * source(x, arguments) }
+            bkg -> Spectrum { _, _ -> 1.0 }
             else -> (source as? DifferentiableSpectrum)?.derivativeOrNull(symbols)?.let { NBkgSpectrum(it) }
         }
         else -> null

numass-model/src/commonMain/kotlin/ru/inr/mass/models/NumassBeta.kt

@@ -3,6 +3,8 @@
  * To change this template file, choose Tools | Templates
  * and open the template in the editor.
  */
+@file:Suppress("PARAMETER_NAME_CHANGED_ON_OVERRIDE")
+
 package ru.inr.mass.models
 
 import space.kscience.kmath.expressions.Symbol

numass-model/src/commonMain/kotlin/ru/inr/mass/models/NumassResolution.kt

@@ -12,6 +12,8 @@ import kotlin.math.sqrt
 /**
  * @author [Alexander Nozik](mailto:altavir@gmail.com)
  */
+
+@Suppress("PARAMETER_NAME_CHANGED_ON_OVERRIDE")
 public class NumassResolution(
     public val resA: Double = 8.3e-5,
     public val resB: Double = 0.0,
@@ -43,12 +45,12 @@ public class NumassResolution(
 //        else -> ResolutionFunction.getConstantTail()
 //    }
 
-    private fun getValueFast(E: Double, U: Double): Double {
+    private fun getValueFast(e: Double, u: Double): Double {
-        val delta = resA * E
+        val delta = resA * e
         return when {
-            E - U < 0 -> 0.0
+            e - u < 0 -> 0.0
-            E - U > delta -> tailFunction(E, U)
+            e - u > delta -> tailFunction(e, u)
-            else -> (E - U) / delta
+            else -> (e - u) / delta
         }
     }
 
@@ -57,15 +59,15 @@ public class NumassResolution(
     override val x: Symbol get() = e
     override val y: Symbol get() = u
 
-    override fun invoke(E: Double, U: Double, arguments: Map<Symbol, Double>): Double {
+    override fun invoke(e: Double, u: Double, arguments: Map<Symbol, Double>): Double {
         if (resB <= 0) {
-            return this.getValueFast(E, U)
+            return this.getValueFast(e, u)
         }
-        val delta = resA * E
+        val delta = resA * e
         return when {
-            E - U < 0 -> 0.0
+            e - u < 0 -> 0.0
-            E - U > delta -> tailFunction(E, U)
+            e - u > delta -> tailFunction(e, u)
-            else -> (1 - sqrt(1 - (E - U) / E * resB)) / (1 - sqrt(1 - resA * resB))
+            else -> (1 - sqrt(1 - (e - u) / e * resB)) / (1 - sqrt(1 - resA * resB))
         }
     }
 

numass-model/src/commonMain/kotlin/ru/inr/mass/models/NumassTransmission.kt

@@ -274,13 +274,13 @@ public class NumassTransmission(
          * Значение полной производной функции потерь с учетом всех неисчезающих
          * порядков
          *
-         * @param X
+         * @param thickness
          * @param eIn
          * @param eOut
          * @return
          */
-        private fun getTotalLossDeriv(X: Double, eIn: Double, eOut: Double): Double {
+        private fun getTotalLossDeriv(thickness: Double, eIn: Double, eOut: Double): Double {
-            val probs = getLossProbDerivs(X)
+            val probs = getLossProbDerivs(thickness)
 
             var sum = 0.0
             for (i in 1 until probs.size) {
@@ -399,8 +399,8 @@ public class NumassTransmission(
 //            return getSingleScatterFunction(exPos, ionPos, exW, ionW, exIonRatio)
 //        }
 
-        public val trapFunction: (Double, Double) -> Double = { Ei: Double, Ef: Double ->
+        public val trapFunction: (Double, Double) -> Double = { ei: Double, ef: Double ->
-            val eps = Ei - Ef
+            val eps = ei - ef
             if (eps > 10) {
                 1.86e-04 * exp(-eps / 25.0) + 5.5e-05
             } else {

numass-workspace/build.gradle.kts

@@ -20,7 +20,8 @@ dependencies {
     implementation("space.kscience:dataforge-workspace:$dataforgeVersion")
 
     implementation("space.kscience:kmath-jupyter:$kmathVersion")
-    implementation("space.kscience:tables-kt:$tablesVersion")
+    implementation("space.kscience:tables-kt-csv:$tablesVersion")
+    implementation("org.apache.commons:commons-csv:1.10.0")
     implementation("space.kscience:visionforge-plotly:$visionForgeVersion")
 }
 

numass-workspace/src/main/kotlin/ru/inr/mass/scripts/fit.kt

@@ -0,0 +1,80 @@
+package ru.inr.mass.scripts
+
+import ru.inr.mass.models.*
+import ru.inr.mass.workspace.buffer
+import ru.inr.mass.workspace.fitWith
+import ru.inr.mass.workspace.generate
+import space.kscience.kmath.UnstableKMathAPI
+import space.kscience.kmath.expressions.Symbol
+import space.kscience.kmath.expressions.derivative
+import space.kscience.kmath.operations.asSequence
+import space.kscience.kmath.optimization.*
+import space.kscience.kmath.real.step
+import space.kscience.plotly.Plotly
+import space.kscience.plotly.makeFile
+import space.kscience.plotly.models.ScatterMode
+import space.kscience.plotly.scatter
+import kotlin.math.pow
+
+
+@OptIn(UnstableKMathAPI::class)
+suspend fun main() {
+    val spectrum: NBkgSpectrum = SterileNeutrinoSpectrum(
+        fss = FSS.default,
+//        resolution = NumassResolution(8.2e-5)
+    ).withNBkg()
+
+    val args: Map<Symbol, Double> = mapOf(
+        NBkgSpectrum.norm to 8e5,
+        NBkgSpectrum.bkg to 2.0,
+        NumassBeta.mnu2 to 0.0,
+        NumassBeta.e0 to 18575.0,
+        NumassBeta.msterile2 to 1000.0.pow(2),
+        NumassBeta.u2 to 1e-2,
+        NumassTransmission.thickness to 0.3,
+        NumassTransmission.trap to 1.0
+    )
+
+    listOf(NBkgSpectrum.norm, NBkgSpectrum.bkg, NumassBeta.e0).forEach {
+        println("$it: ${spectrum.derivative(it).invoke(14000.0, args)}")
+    }
+
+    val timePerPoint = 30.0
+
+    val strategy = (12000.0..19000.0 step 100.0).asSequence().associateWith { timePerPoint }
+
+    val generatedData = spectrum.generate(strategy, args)
+
+    val fit: XYFit = generatedData.fitWith(
+        optimizer = QowOptimizer,
+        modelExpression = spectrum,
+        startingPoint = args + mapOf(NBkgSpectrum.norm to 8.1e5),
+        OptimizationParameters(NBkgSpectrum.norm, NBkgSpectrum.bkg, NumassBeta.e0),
+        OptimizationIterations(20)
+    )
+
+    println("Chi squared/dof: ${fit.chiSquaredOrNull}/${fit.dof}")
+
+    Plotly.plot {
+        scatter {
+            name = "Generated"
+            mode = ScatterMode.markers
+            x.buffer = generatedData.x
+            y.buffer = generatedData.y
+        }
+
+        scatter {
+            name = "Initial"
+            mode = ScatterMode.lines
+            x.buffer = 12000.0..18600.0 step 50.0
+            y.numbers = x.doubles.map { spectrum(it, args) }
+        }
+
+        scatter {
+            name = "Fit"
+            mode = ScatterMode.lines
+            x.buffer = 12000.0..18600.0 step 10.0
+            y.numbers = x.doubles.map { spectrum(it, args + fit.resultPoint) }
+        }
+    }.makeFile()
+}

numass-workspace/src/main/kotlin/ru/inr/mass/scripts/readGCPoint.kt

@@ -0,0 +1,17 @@
+package ru.inr.mass.scripts
+
+//import com.google.cloud.storage.contrib.nio.CloudStorageFileSystem
+//import ru.inr.mass.data.proto.NumassDirectorySet
+//import ru.inr.mass.workspace.Numass
+//import space.kscience.dataforge.data.DataTree
+//
+//// https://storage.cloud.google.com/numass-data/2020_12/Adiabaticity/16/set_3/p10(10s)(HV1%3D13750)
+//
+//suspend fun main() {
+//    CloudStorageFileSystem.forBucket("numass-data").use { fs ->
+//        val repo: DataTree<NumassDirectorySet> = Numass.readRepository(fs.getPath("2020_12/Adiabaticity"))
+//        repo.items().forEach{ (key,item)->
+//            println(key)
+//        }
+//    }
+//}

numass-workspace/src/main/kotlin/ru/inr/mass/scripts/run_2023.kt

@@ -0,0 +1,97 @@
+package ru.inr.mass.scripts
+
+import org.apache.commons.csv.CSVFormat
+import ru.inr.mass.models.*
+import ru.inr.mass.workspace.Numass
+import ru.inr.mass.workspace.buffer
+import ru.inr.mass.workspace.fitWith
+import space.kscience.dataforge.meta.Value
+import space.kscience.dataforge.meta.double
+import space.kscience.kmath.UnstableKMathAPI
+import space.kscience.kmath.data.XYErrorColumnarData
+import space.kscience.kmath.expressions.Symbol
+import space.kscience.kmath.optimization.*
+import space.kscience.kmath.real.map
+import space.kscience.kmath.real.step
+import space.kscience.kmath.structures.DoubleBuffer
+import space.kscience.kmath.structures.indices
+import space.kscience.plotly.*
+import space.kscience.plotly.models.ScatterMode
+import space.kscience.tables.Column
+import space.kscience.tables.Table
+import space.kscience.tables.csv.readAsCsv
+import space.kscience.tables.get
+import kotlin.math.pow
+
+fun Column<Value>.toDoubleBuffer() = DoubleBuffer(size) { get(it).double }
+
+@OptIn(UnstableKMathAPI::class)
+suspend fun main() {
+    val input = Table.readAsCsv(
+        Numass::class.java.getResource("/data/2023_events.tsv")!!,
+        csvFormat = CSVFormat.TDF
+    )
+
+    val timePerPoint = 30.0 * 129
+
+    val data: XYErrorColumnarData<Double, Double, Double> = XYErrorColumnarData.of(
+        input.columns["U"].toDoubleBuffer(),
+        input.columns["events"].toDoubleBuffer().map { it / timePerPoint },
+        input.columns["error"].toDoubleBuffer().map { it / timePerPoint }
+    )
+
+    val spectrum: NBkgSpectrum = SterileNeutrinoSpectrum(fss = FSS.default).withNBkg()
+
+    val args: Map<Symbol, Double> = mapOf(
+        NBkgSpectrum.norm to 215443.0,
+        NBkgSpectrum.bkg to 2.0,
+        NumassBeta.mnu2 to 0.0,
+        NumassBeta.e0 to 18575.0,
+        NumassBeta.msterile2 to 2000.0.pow(2),
+        NumassBeta.u2 to 0.0,
+        NumassTransmission.thickness to 0.3,
+        NumassTransmission.trap to 1.0
+    )
+
+
+    val fit: XYFit = data.fitWith(
+        optimizer = QowOptimizer,
+        modelExpression = spectrum,
+        startingPoint = args,
+        OptimizationParameters(NBkgSpectrum.norm, NBkgSpectrum.bkg, NumassBeta.e0),
+        OptimizationIterations(20)
+    )
+
+    println("Chi squared/dof: ${fit.chiSquaredOrNull}/${fit.dof}")
+
+
+    Plotly.page {
+        plot {
+            scatter {
+                name = "Data"
+                mode = ScatterMode.markers
+                x.buffer = data.x
+                y.buffer = data.y
+            }
+
+            scatter {
+                name = "Fit"
+                mode = ScatterMode.lines
+                x.buffer = 12000.0..18600.0 step 10.0
+                y.numbers = x.doubles.map { spectrum(it, args + fit.resultPoint) }
+            }
+        }
+
+        plot {
+            layout.title = "residuals"
+            scatter {
+                mode = ScatterMode.markers
+                x.buffer = data.x
+                y.numbers = data.x.indices.map {
+                    (data.y[it] - spectrum(data.x[it], args + fit.resultPoint))/data.yErr[it]
+                }
+            }
+        }
+    }.makeFile()
+
+}

numass-workspace/src/main/kotlin/ru/inr/mass/workspace/NumassWorkspacePlugin.kt

@@ -18,7 +18,6 @@ import space.kscience.dataforge.workspace.WorkspacePlugin
 import space.kscience.dataforge.workspace.pipeFrom
 import space.kscience.dataforge.workspace.task
 import space.kscience.tables.Table
-import kotlin.reflect.KClass
 
 class NumassWorkspacePlugin : WorkspacePlugin() {
     override val tag: PluginTag get() = Companion.tag
@@ -128,7 +127,6 @@ class NumassWorkspacePlugin : WorkspacePlugin() {
 
     companion object : PluginFactory<NumassWorkspacePlugin> {
         override val tag: PluginTag = PluginTag("numass", "ru.mipt.npm")
-        override val type: KClass<out NumassWorkspacePlugin> = NumassWorkspacePlugin::class
         override fun build(context: Context, meta: Meta): NumassWorkspacePlugin = NumassWorkspacePlugin()
     }
 }

numass-workspace/src/main/kotlin/ru/inr/mass/workspace/dataUtils.kt

@@ -0,0 +1,67 @@
+@file:OptIn(UnstableKMathAPI::class)
+
+package ru.inr.mass.workspace
+
+import ru.inr.mass.models.Spectrum
+import space.kscience.kmath.UnstableKMathAPI
+import space.kscience.kmath.data.XYColumnarData
+import space.kscience.kmath.data.XYErrorColumnarData
+import space.kscience.kmath.expressions.DifferentiableExpression
+import space.kscience.kmath.expressions.Symbol
+import space.kscience.kmath.misc.FeatureSet
+import space.kscience.kmath.misc.Loggable
+import space.kscience.kmath.optimization.*
+import space.kscience.kmath.random.RandomGenerator
+import space.kscience.kmath.samplers.PoissonSampler
+import space.kscience.kmath.stat.next
+import space.kscience.kmath.structures.asBuffer
+import kotlin.math.sqrt
+
+public suspend fun XYColumnarData<Double, Double, Double>.fitWith(
+    optimizer: Optimizer<Double, XYFit>,
+    modelExpression: DifferentiableExpression<Double>,
+    startingPoint: Map<Symbol, Double>,
+    vararg features: OptimizationFeature = emptyArray(),
+    xSymbol: Symbol = Symbol.x,
+    pointToCurveDistance: PointToCurveDistance = PointToCurveDistance.byY,
+    pointWeight: PointWeight = PointWeight.byYSigma,
+): XYFit {
+    var actualFeatures = FeatureSet.of(*features, OptimizationStartPoint(startingPoint))
+
+    if (actualFeatures.getFeature<OptimizationLog>() == null) {
+        actualFeatures = actualFeatures.with(OptimizationLog(Loggable.console))
+    }
+    val problem = XYFit(
+        this,
+        modelExpression,
+        actualFeatures,
+        pointToCurveDistance,
+        pointWeight,
+        xSymbol
+    )
+    return optimizer.optimize(problem)
+}
+
+public suspend fun Spectrum.generate(
+    strategy: Map<Double, Double>,
+    arguments: Map<Symbol, Double>,
+    generator: RandomGenerator = RandomGenerator.default,
+): XYErrorColumnarData<Double, Double, Double> {
+    val xs = mutableListOf<Double>()
+    val ys = mutableListOf<Double>()
+    val errors = mutableListOf<Double>()
+
+    strategy.forEach { (x, time) ->
+        xs.add(x)
+        val mu = invoke(x, arguments) * time
+        val y = PoissonSampler(mu).next(generator) / time
+        val error = sqrt(mu) / time
+        ys.add(y)
+        errors.add(error)
+    }
+    return XYErrorColumnarData.of(
+        xs.toTypedArray().asBuffer(),
+        ys.toTypedArray().asBuffer(),
+        errors.toTypedArray().asBuffer()
+    )
+}

numass-workspace/src/main/kotlin/ru/inr/mass/workspace/plots.kt

@@ -12,9 +12,9 @@ import ru.inr.mass.data.proto.HVData
 import ru.inr.mass.data.proto.NumassDirectorySet
 import space.kscience.dataforge.meta.asValue
 import space.kscience.dataforge.meta.double
+import space.kscience.kmath.UnstableKMathAPI
 import space.kscience.kmath.domains.center
 import space.kscience.kmath.histogram.Histogram1D
-import space.kscience.kmath.misc.UnstableKMathAPI
 import space.kscience.kmath.operations.asIterable
 import space.kscience.kmath.structures.Buffer
 import space.kscience.kmath.structures.DoubleBuffer

numass-workspace/src/main/resources/data/2023_events.tsv

@@ -0,0 +1,108 @@
+U	events	error
+12000	6.452460E+07	8032.720335
+12050	6.308058E+07	7942.32812
+12100	6.166233E+07	7852.536369
+12150	6.026178E+07	7762.846435
+12200	5.888044E+07	7673.359382
+12250	5.752020E+07	7584.207129
+12300	5.618589E+07	7495.725049
+12350	5.486976E+07	7407.412404
+12400	5.357057E+07	7319.192132
+12450	5.229649E+07	7231.631507
+12500	5.104097E+07	7144.295993
+12550	4.980586E+07	7057.326711
+12600	4.858747E+07	6970.471306
+12650	4.739252E+07	6884.222328
+12700	4.621748E+07	6798.344134
+12750	4.505844E+07	6712.55872
+12800	4.392086E+07	6627.281125
+12850	4.280192E+07	6542.317643
+12900	4.170236E+07	6457.736238
+12950	4.062241E+07	6373.571204
+13000	3.955862E+07	6289.564579
+13050	3.851518E+07	6206.059556
+13100	3.748997E+07	6122.905734
+13150	3.648207E+07	6040.03875
+13200	3.549434E+07	5957.712236
+13250	3.452146E+07	5875.496153
+13300	3.356598E+07	5793.615159
+13350	3.263059E+07	5712.318869
+13400	3.171169E+07	5631.313607
+13450	3.080984E+07	5550.661274
+13500	2.992572E+07	5470.440919
+13550	2.905686E+07	5390.441869
+13600	2.820575E+07	5310.908839
+13650	2.737116E+07	5231.745008
+13700	2.655560E+07	5153.212589
+13750	2.575232E+07	5074.674515
+13800	2.496715E+07	4996.713422
+13850	2.419569E+07	4918.911404
+13900	2.344232E+07	4841.727268
+13950	2.270363E+07	4764.832291
+14000	2.198215E+07	4688.512852
+14050	2.127411E+07	4612.386446
+14100	2.058196E+07	4536.734227
+14150	1.990347E+07	4461.330615
+14200	1.924117E+07	4386.475463
+14250	1.859371E+07	4312.041926
+14300	1.796066E+07	4238.001528
+14350	1.734144E+07	4164.305627
+14400	1.673491E+07	4090.832005
+14450	1.614486E+07	4018.066921
+14500	1.556582E+07	3945.354348
+14550	1.500395E+07	3873.492826
+14600	1.445357E+07	3801.785423
+14650	1.391677E+07	3730.51812
+14700	1.339411E+07	3659.796472
+14750	1.288430E+07	3589.470303
+14800	1.238646E+07	3519.440284
+14850	1.190164E+07	3449.875909
+14900	1.143011E+07	3380.844281
+14950	1.097078E+07	3312.217027
+15000	1.052425E+07	3244.109423
+15050	1.008924E+07	3176.356172
+15100	9.665787E+06	3108.984892
+15150	9.254249E+06	3042.079724
+15200	8.854339E+06	2975.624154
+15250	8.467155E+06	2909.837666
+15300	8.090963E+06	2844.46187
+15350	7.725603E+06	2779.496931
+15400	7.370687E+06	2714.900844
+15450	7.028022E+06	2651.041609
+15500	6.694518E+06	2587.376647
+15550	6.372090E+06	2524.299879
+15600	6.058846E+06	2461.472259
+15650	5.758606E+06	2399.709617
+15700	5.466336E+06	2338.019685
+15750	5.183979E+06	2276.835393
+15800	4.912587E+06	2216.435542
+15850	4.648231E+06	2155.975548
+15900	4.396058E+06	2096.677784
+15950	4.151727E+06	2037.578662
+16000	3.916397E+06	1978.98901
+16100	3.473288E+06	1863.676016
+16200	3.065010E+06	1750.717128
+16300	2.688767E+06	1639.746111
+16400	2.344119E+06	1531.051707
+16500	2.029421E+06	1424.577365
+16600	1.743956E+06	1320.589413
+16700	1.487062E+06	1219.45145
+16800	1.255541E+06	1120.509421
+16900	1.049216E+06	1024.312329
+17000	8.724297E+05	934.0394267
+17100	7.157295E+05	846.0079518
+17200	5.750288E+05	758.3065238
+17300	4.560588E+05	675.3212528
+17400	3.553991E+05	596.1536111
+17500	2.697442E+05	519.3690855
+17600	2.005270E+05	447.8024159
+17700	1.434300E+05	378.7215839
+17800	9.860455E+04	314.0136092
+17900	6.354514E+04	252.0816166
+18000	3.898907E+04	197.456499
+18100	2.149273E+04	146.6039915
+18200	1.010559E+04	100.5265405
+18300	4.910901E+03	70.07781835
+18400	2.252190E+03	47.4572434
+18500	1.860929E+03	43.13848425
+18600	1.760000E+03	41.95235393

settings.gradle.kts

@@ -1,7 +1,6 @@
 rootProject.name = "numass"
 
 enableFeaturePreview("TYPESAFE_PROJECT_ACCESSORS")
-enableFeaturePreview("VERSION_CATALOGS")
 
 pluginManagement {
 
@@ -15,6 +14,7 @@ pluginManagement {
     }
 
     plugins {
+        id("org.jetbrains.compose").version(extra["compose.version"] as String)
         id("space.kscience.gradle.project") version toolsVersion
         id("space.kscience.gradle.mpp") version toolsVersion
         id("space.kscience.gradle.jvm") version toolsVersion