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@ -1,201 +0,0 @@
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2
dataforge-core/src/main/kotlin/hep/dataforge/context/PluginLoader.kt
View File

@ -120,7 +120,7 @@ abstract class AbstractPluginLoader : PluginLoader {
protected fun compare(p1: PluginFactory, p2: PluginFactory): Int {
return p1.tag.getInt("priority", 0).compareTo(p2.tag.getInt("priority", 0))
return Integer.compare(p1.tag.getInt("priority", 0), p2.tag.getInt("priority", 0))
}
override fun listTags(): List<PluginTag> {

2
dataforge-core/src/main/kotlin/hep/dataforge/io/envelopes/DefaultEnvelopeReader.kt
View File

@ -88,7 +88,7 @@ open class DefaultEnvelopeReader : EnvelopeReader {
val dataLength = tag.dataSize
if (metaLength < 0 || dataLength < 0) {
LoggerFactory.getLogger(javaClass).error("Can't lazy read infinite data or meta. Returning non-lazy envelope")
return read(Files.newInputStream(file))
return read(file)
}
val metaBuffer = ByteBuffer.allocate(metaLength)

2
dataforge-core/src/main/kotlin/hep/dataforge/names/Name.kt
View File

@ -215,7 +215,7 @@ interface Name : Comparable<Name> {
return of(segments[0])
}
return of(Stream.of(*segments).filter { it -> it.isNotEmpty() }.map { of(it) }.toList())
return of(Stream.of(*segments).filter { it -> !it.isEmpty() }.map<Name>{ of(it) }.toList())
}
fun joinString(vararg segments: String): String {

4
dataforge-core/src/main/kotlin/hep/dataforge/values/ValueProvider.kt
View File

@ -31,7 +31,9 @@ interface ValueProvider {
fun optValue(path: String): Optional<Value>
fun getValue(path: String): Value = optValue(path).orElseThrow { NameNotFoundException(path) }
fun getValue(path: String): Value {
return optValue(path).orElseThrow<NameNotFoundException> { NameNotFoundException(path) }
}
@Provides(BOOLEAN_TARGET)

4
dataforge-plots/plots-jfc/src/main/kotlin/hep/dataforge/plots/jfreechart/JFreeChartFrame.kt
View File

@ -150,11 +150,13 @@ class JFreeChartFrame : XYPlotFrame(), FXPlotFrame, Serializable {
return Range(meta.getDouble("lower", java.lang.Double.NEGATIVE_INFINITY), meta.getDouble("upper", java.lang.Double.POSITIVE_INFINITY))
}
private fun getAxis(axisMeta: Meta): ValueAxis = when (axisMeta.getString("type", "number").lowercase()) {
private fun getAxis(axisMeta: Meta): ValueAxis {
return when (axisMeta.getString("type", "number").lowercase()) {
"log" -> getLogAxis(axisMeta)
"time" -> getDateAxis(axisMeta)
else -> getNumberAxis(axisMeta)
}
}
override fun updateAxis(axisName: String, axisMeta: Meta, plotMeta: Meta) {
val axis = getAxis(axisMeta)

24
dataforge-plots/src/main/kotlin/hep/dataforge/plots/PlotGroup.kt
View File

@ -112,29 +112,37 @@ class PlotGroup(override val name: String, descriptor: NodeDescriptor = NodeDes
}
@ProvidesNames(PLOT_TARGET)
fun list(): Stream<String> = stream().map { it.first.toString() }
fun list(): Stream<String> {
return stream().map { it.first.toString() }
}
/**
* Recursive stream of all plots excluding intermediate nodes
*
* @return
*/
fun stream(recursive: Boolean = true): Stream<Pair<Name, Plottable>> = plots.stream().flatMap {
fun stream(recursive: Boolean = true): Stream<Pair<Name, Plottable>> {
return plots.stream().flatMap {
if (recursive && it is PlotGroup) {
it.stream().map { pair -> Pair(Name.ofSingle(it.name) + pair.first, pair.second) }
} else {
Stream.of(Pair(Name.ofSingle(it.name), it))
}
}
}
@Provides(PLOT_TARGET)
operator fun get(name: String): Plottable? = get(Name.of(name))
operator fun get(name: String): Plottable? {
return get(Name.of(name))
}
operator fun get(name: Name): Plottable? = when (name.length) {
0 -> this
1 -> plots.find { it.name == name.unescaped }
operator fun get(name: Name): Plottable? {
return when {
name.length == 0 -> this
name.length == 1 -> plots.find { it.name == name.unescaped }
else -> (get(name.cutLast()) as? PlotGroup)?.get(name.last)
}
}
/**
* * Add plottable if it is absent,
@ -195,7 +203,9 @@ class PlotGroup(override val name: String, descriptor: NodeDescriptor = NodeDes
*
* @return
*/
override fun iterator(): Iterator<Plottable> = this.plots.iterator()
override fun iterator(): Iterator<Plottable> {
return this.plots.iterator()
}
class Wrapper : hep.dataforge.io.envelopes.Wrapper<PlotGroup> {

37
dataforge-storage/src/main/kotlin/hep/dataforge/storage/files/FileStorage.kt
View File

@ -35,10 +35,7 @@ import hep.dataforge.storage.StorageManager
import kotlinx.coroutines.async
import kotlinx.coroutines.awaitAll
import kotlinx.coroutines.runBlocking
import java.nio.file.Files
import java.nio.file.Path
import java.nio.file.Paths
import java.nio.file.StandardOpenOption
import java.nio.file.*
import kotlin.streams.asSequence
/**
@ -60,12 +57,7 @@ interface FileStorageElementType : StorageElementType, Named {
/**
* Read given path as [FileStorageElement] with given parent. Returns null if path does not belong to storage
*/
suspend fun read(
context: Context,
path: Path,
parent: StorageElement? = null,
readMeta: Meta? = null,
): FileStorageElement?
suspend fun read(context: Context, path: Path, parent: StorageElement? = null): FileStorageElement?
}
class FileStorage(
@ -103,12 +95,12 @@ class FileStorage(
}
}
// /**
// * Creating a watch service or reusing one from parent
// */
// private val watchService: WatchService by lazy {
// (parent as? FileStorage)?.watchService ?: path.fileSystem.newWatchService()
// }
/**
* Creating a watch service or reusing one from parent
*/
private val watchService: WatchService by lazy {
(parent as? FileStorage)?.watchService ?: path.fileSystem.newWatchService()
}
//TODO actually watch for file change
@ -125,13 +117,15 @@ class FileStorage(
fun resolveMeta(
path: Path,
metaReader: (Path) -> Meta? = { EnvelopeType.infer(it)?.reader?.read(it)?.meta },
): Meta? = if (Files.isDirectory(path)) {
): Meta? {
return if (Files.isDirectory(path)) {
Files.list(path).asSequence()
.find { it.fileName.toString() == "meta.df" || it.fileName.toString() == "meta" }
?.let(metaReader)
} else {
metaReader(path)
}
}
fun createMetaEnvelope(meta: Meta): Envelope {
return EnvelopeBuilder().meta(meta).setEnvelopeType(META_ENVELOPE_TYPE).build()
@ -173,13 +167,8 @@ class FileStorage(
}
}
override suspend fun read(
context: Context,
path: Path,
parent: StorageElement?,
readMeta: Meta?,
): FileStorageElement? {
val meta = readMeta ?: resolveMeta(path)
override suspend fun read(context: Context, path: Path, parent: StorageElement?): FileStorageElement? {
val meta = resolveMeta(path)
val name = meta?.optString("name").nullable ?: path.fileName.toString()
val type = meta?.optString("type").nullable?.let {
context.load<StorageManager>().getType(it)

2
dataforge-storage/src/main/kotlin/hep/dataforge/storage/files/FileTableLoader.kt
View File

@ -299,7 +299,7 @@ class TableLoaderType : FileStorageElementType {
})
}
override suspend fun read(context: Context, path: Path, parent: StorageElement?, readMeta: Meta?): FileStorageElement {
override suspend fun read(context: Context, path: Path, parent: StorageElement?): FileStorageElement? {
val envelope = EnvelopeReader.readFile(path)
val name = envelope.meta.optString("name").nullable ?: path.fileName.toString()

4
numass-core/numass-data-proto/src/main/kotlin/inr/numass/data/ProtoNumassPoint.kt
View File

@ -106,11 +106,13 @@ class ProtoNumassPoint(override val meta: Meta, val protoBuilder: () -> NumassPr
this.data.stream
}
fun fromEnvelope(envelope: Envelope): ProtoNumassPoint = ProtoNumassPoint(envelope.meta) {
fun fromEnvelope(envelope: Envelope): ProtoNumassPoint {
return ProtoNumassPoint(envelope.meta) {
envelope.dataStream().use {
NumassProto.Point.parseFrom(it)
}
}
}
// fun readFile(path: String, context: Context = Global): ProtoNumassPoint {
// return readFile(context.getFile(path).absolutePath)

2
numass-core/src/main/kotlin/inr/numass/data/NumassDataUtils.kt
View File

@ -82,7 +82,7 @@ object NumassDataUtils {
}
fun read(envelope: Envelope): NumassPoint =
if (envelope.meta.hasMeta("dpp_params") || envelope.meta.hasMeta("channels") || envelope.meta.hasMeta("tqdc")) {
if (envelope.meta.hasMeta("dpp_params") || envelope.meta.hasMeta("tqdc")) {
ProtoNumassPoint.fromEnvelope(envelope)
} else {
ClassicNumassPoint(envelope)

5
numass-core/src/main/kotlin/inr/numass/data/storage/NumassDataLoader.kt
View File

@ -56,9 +56,9 @@ class NumassDataLoader(
override fun getConnectionHelper(): ConnectionHelper = _connectionHelper
override val meta: Meta get() {
override val meta: Meta by lazy {
val metaPath = path.resolve("meta")
return NumassEnvelopeType.infer(metaPath)?.reader?.read(metaPath)?.meta ?: Meta.empty()
NumassEnvelopeType.infer(metaPath)?.reader?.read(metaPath)?.meta ?: Meta.empty()
}
override suspend fun getHvData(): Table? {
@ -73,6 +73,7 @@ class NumassDataLoader(
}
}
private val pointEnvelopes: List<Envelope> by lazy {
Files.list(path)
.filter { it.fileName.toString().startsWith(POINT_FRAGMENT_NAME) }

49
numass-core/src/main/kotlin/inr/numass/data/storage/NumassDirectory.kt → numass-core/src/main/kotlin/inr/numass/data/storage/NumassStorage.kt
View File

@ -15,74 +15,31 @@
*/
package inr.numass.data.storage
import hep.dataforge.connections.ConnectionHelper
import hep.dataforge.context.Context
import hep.dataforge.context.Global
import hep.dataforge.events.Event
import hep.dataforge.events.EventBuilder
import hep.dataforge.io.envelopes.Envelope
import hep.dataforge.meta.Meta
import hep.dataforge.nullable
import hep.dataforge.storage.StorageElement
import hep.dataforge.storage.StorageManager
import hep.dataforge.storage.files.FileStorage
import hep.dataforge.storage.files.FileStorageElement
import hep.dataforge.storage.files.FileStorageElementType
import inr.numass.data.NumassEnvelopeType
import kotlinx.coroutines.runBlocking
import java.nio.file.Files
import java.nio.file.Path
class EnvelopeStorageElement(
override val context: Context,
override val name: String,
override val meta: Meta,
override val path: Path,
override val parent: StorageElement?,
) : FileStorageElement {
private val _connectionHelper by lazy { ConnectionHelper(this) }
override fun getConnectionHelper(): ConnectionHelper = _connectionHelper
val envelope: Envelope? get() = NumassEnvelopeType.infer(path)?.reader?.read(path)
}
/**
* Numass storage directory. Works as a normal directory, but creates a numass loader from each directory with meta
*/
class NumassDirectory : FileStorage.Directory() {
override val name: String = NUMASS_DIRECTORY_TYPE
override suspend fun read(
context: Context,
path: Path,
parent: StorageElement?,
readMeta: Meta?,
): FileStorageElement? {
val meta = readMeta ?: FileStorage.resolveMeta(path) { NumassEnvelopeType.infer(it)?.reader?.read(it)?.meta }
override suspend fun read(context: Context, path: Path, parent: StorageElement?): FileStorageElement? {
val meta = FileStorage.resolveMeta(path){ NumassEnvelopeType.infer(it)?.reader?.read(it)?.meta }
return if (Files.isDirectory(path) && meta != null) {
NumassDataLoader(context, parent, path.fileName.toString(), path)
} else {
val name = meta?.optString("name").nullable ?: path.fileName.toString()
val type = meta?.optString("type").nullable?.let {
context.load<StorageManager>().getType(it)
} as? FileStorageElementType
if (type == null || type is FileStorage.Directory) {
// Read path as directory if type not found and path is directory
if (Files.isDirectory(path)) {
FileStorage(context, name, meta ?: Meta.empty(), path, parent, this)
} else {
EnvelopeStorageElement(context, name, meta ?: Meta.empty(), path, parent)
}
} else {
//Otherwise, delegate to the type
type.read(context, path, parent)
}.also {
if (it != null && parent == null) {
context.load<StorageManager>().register(it)
}
}
super.read(context, path, parent)
}
}

3
numass-main/src/main/kotlin/inr/numass/scripts/analysis/test_data.kt
View File

@ -10,8 +10,7 @@ fun main() {
Global.output = FXOutputManager()
JFreeChartPlugin().startGlobal()
val file = File("D:\\Work\\Numass\\data\\test\\7.df").toPath()
println(file)
val file = File("C:\\Users\\darksnake\\Desktop\\test-data\\p20211012142003(20s)").toPath()
val point = ProtoNumassPoint.readFile(file)
point.events.forEach {

29
numass-viewer/build.gradle.kts
View File

@ -19,7 +19,7 @@ application {
mainClass.set("inr.numass.viewer.Viewer")
}
version = "0.6.3"
version = "0.6.0"
description = "The viewer for numass data"
@ -30,7 +30,6 @@ dependencies {
}
val addJvmArgs = listOf(
"-XX:+UseZGC",
"--add-exports=javafx.graphics/com.sun.glass.ui=ALL-UNNAMED",
"--add-opens=javafx.graphics/com.sun.javafx.css=ALL-UNNAMED",
"--add-opens=javafx.graphics/com.sun.javafx.scene=ALL-UNNAMED",
@ -40,10 +39,6 @@ val addJvmArgs = listOf(
"--add-opens=javafx.controls/com.sun.javafx.scene.control.behavior=ALL-UNNAMED",
"--add-opens=javafx.controls/javafx.scene.control.skin=ALL-UNNAMED",
"--add-exports=javafx.controls/com.sun.javafx.scene.control.inputmap=ALL-UNNAMED",
"--add-exports=javafx.controls/com.sun.javafx.scene.control.behavior=ALL-UNNAMED",
"--add-exports=javafx.base/com.sun.javafx.event=ALL-UNNAMED",
"--add-opens=javafx.controls/javafx.scene.control.skin=ALL-UNNAMED",
"--add-opens=javafx.graphics/javafx.scene=ALL-UNNAMED"
)
application {
@ -62,28 +57,8 @@ runtime {
"javafx.controls"
)
jpackage {
//installerType = "deb"
jvmArgs = addJvmArgs
val currentOs = org.gradle.internal.os.OperatingSystem.current()
installerOptions = installerOptions + listOf("--vendor", "MIPT-NPM lab")
if (currentOs.isWindows) {
installerOptions = installerOptions + listOf(
"--win-menu",
"--win-menu-group", "Numass",
"--win-dir-chooser",
"--win-shortcut"
)
} else if (currentOs.isLinux) {
installerType = "deb"
installerOptions = installerOptions + listOf(
"--linux-package-name", "numass-viewer",
"--linux-shortcut",
"--linux-deb-maintainer", "nozik.aa@mipt.ru",
"--linux-menu-group", "Science",
"--linux-shortcut"
)
}
//imageOptions = listOf("--linux-deb-maintainer", "nozik.aa@mipt.ru", "--linux-menu-group", "Science")
}
launcher {
jvmArgs = addJvmArgs

135
numass-viewer/src/main/kotlin/inr/numass/viewer/AmplitudeView.kt
View File

@ -2,31 +2,35 @@ package inr.numass.viewer
import hep.dataforge.configure
import hep.dataforge.fx.dfIcon
import hep.dataforge.fx.except
import hep.dataforge.fx.plots.PlotContainer
import hep.dataforge.fx.runGoal
import hep.dataforge.fx.ui
import hep.dataforge.goals.Goal
import hep.dataforge.names.Name
import hep.dataforge.plots.PlotGroup
import hep.dataforge.plots.Plottable
import hep.dataforge.plots.data.DataPlot
import hep.dataforge.plots.jfreechart.JFreeChartFrame
import hep.dataforge.tables.Adapters
import inr.numass.data.analyzers.NumassAnalyzer
import inr.numass.data.analyzers.withBinning
import inr.numass.data.api.NumassPoint
import javafx.beans.Observable
import javafx.beans.binding.DoubleBinding
import javafx.beans.property.SimpleBooleanProperty
import javafx.beans.property.SimpleIntegerProperty
import javafx.beans.property.SimpleObjectProperty
import javafx.collections.FXCollections
import javafx.collections.MapChangeListener
import javafx.collections.ObservableMap
import javafx.scene.control.CheckBox
import javafx.scene.control.ChoiceBox
import javafx.scene.image.ImageView
import kotlinx.coroutines.*
import kotlinx.coroutines.javafx.JavaFx
import kotlinx.coroutines.Dispatchers
import tornadofx.*
class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = ImageView(dfIcon)) {
private val dataController by inject<DataController>()
private val data get() = dataController.points
private val pointCache by inject<PointCache>()
private val frame = JFreeChartFrame().configure {
"title" to "Detector response plot"
@ -50,17 +54,17 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
}.setType<DataPlot>()
}
val binningProperty = SimpleIntegerProperty(2)
var binning: Int by binningProperty
val binningProperty = SimpleObjectProperty(20)
var binning by binningProperty
val normalizeProperty = SimpleBooleanProperty(true)
var normalize by normalizeProperty
private val plotContainer = PlotContainer(frame).apply {
val binningSelector: ChoiceBox<Int> = ChoiceBox(FXCollections.observableArrayList(1, 2, 8, 16, 32)).apply {
private val container = PlotContainer(frame).apply {
val binningSelector: ChoiceBox<Int> = ChoiceBox(FXCollections.observableArrayList(1, 2, 8, 16, 32, 50)).apply {
minWidth = 0.0
selectionModel.select(binning as Int?)
selectionModel.selectLast()
binningProperty.bind(this.selectionModel.selectedItemProperty())
}
val normalizeSwitch: CheckBox = CheckBox("Normalize").apply {
@ -70,48 +74,61 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
addToSideBar(0, binningSelector, normalizeSwitch)
}
private val plotJobs: ObservableMap<String, Job> = FXCollections.observableHashMap()
private val data: ObservableMap<String, NumassPoint> = FXCollections.observableHashMap()
private val plots: ObservableMap<String, Goal<Plottable>> = FXCollections.observableHashMap()
val isEmpty = booleanBinding(data) { isEmpty() }
private val progress = object : DoubleBinding() {
init {
bind(plotJobs)
bind(plots)
}
override fun computeValue(): Double {
return plots.values.count { it.isDone }.toDouble() / data.size;
}
override fun computeValue(): Double = plotJobs.values.count { it.isCompleted }.toDouble() / plotJobs.size
}
init {
data.addListener(MapChangeListener { change ->
val key = change.key.toString()
if (change.wasAdded()) {
replotOne(key, change.valueAdded)
} else if (change.wasRemoved()) {
plotJobs[key]?.cancel()
plotJobs.remove(key)
frame.plots.remove(Name.ofSingle(key))
progress.invalidate()
data.addListener { _: Observable ->
invalidate()
}
})
binningProperty.onChange {
replot()
frame.plots.clear()
plots.clear()
invalidate()
}
normalizeProperty.onChange {
replot()
frame.plots.clear()
plots.clear()
invalidate()
}
plotContainer.progressProperty.bind(progress)
container.progressProperty.bind(progress)
}
private fun replotOne(key: String, point: DataController.CachedPoint) {
plotJobs[key]?.cancel()
frame.plots.remove(Name.ofSingle(key))
plotJobs[key] = app.context.launch {
withContext(Dispatchers.JavaFx) {
progress.invalidate()
override val root = borderpane {
center = container.root
}
/**
* Put or replace current plot with name `key`
*/
operator fun set(key: String, point: NumassPoint) {
data[key] = point
}
fun addAll(data: Map<String, NumassPoint>) {
this.data.putAll(data);
}
private fun invalidate() {
data.forEach { (key, point) ->
plots.getOrPut(key) {
runGoal<Plottable>(app.context, "loadAmplitudeSpectrum_$key", Dispatchers.IO) {
val valueAxis = if (normalize) {
NumassAnalyzer.COUNT_RATE_KEY
} else {
@ -119,9 +136,9 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
}
val adapter = Adapters.buildXYAdapter(NumassAnalyzer.CHANNEL_KEY, valueAxis)
val channels = point.channelSpectra.await()
val channels = pointCache.getChannelSpectra(key, point)
val plot = if (channels.size == 1) {
return@runGoal if (channels.size == 1) {
DataPlot.plot(
key,
channels.values.first().withBinning(binning),
@ -129,7 +146,7 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
)
} else {
val group = PlotGroup.typed<DataPlot>(key)
channels.forEach { (key, spectrum) ->
channels.forEach { key, spectrum ->
val plot = DataPlot.plot(
key.toString(),
spectrum.withBinning(binning),
@ -139,29 +156,47 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
}
group
}
withContext(Dispatchers.JavaFx) {
} ui { plot ->
frame.add(plot)
}
}.apply {
invokeOnCompletion {
runLater{
progress.invalidate()
} except {
progress.invalidate()
}
}
plots.keys.filter { !data.containsKey(it) }.forEach { remove(it) }
}
}
private fun replot() {
frame.plots.clear()
plotJobs.forEach { (_, job) -> job.cancel() }
plotJobs.clear()
data.forEach { (key, point) ->
replotOne(key.toString(), point)
fun clear() {
data.clear()
plots.values.forEach{
it.cancel()
}
plots.clear()
invalidate()
}
override val root = borderpane {
center = plotContainer.root
/**
* Remove the plot and cancel loading task if it is in progress.
*/
fun remove(name: String) {
frame.plots.remove(Name.ofSingle(name))
plots[name]?.cancel()
plots.remove(name)
data.remove(name)
progress.invalidate()
}
/**
* Set frame content to the given map. All keys not in the map are removed.
*/
fun setAll(map: Map<String, NumassPoint>) {
plots.clear();
//Remove obsolete keys
data.keys.filter { !map.containsKey(it) }.forEach {
remove(it)
}
this.addAll(map);
}
}

176
numass-viewer/src/main/kotlin/inr/numass/viewer/DataController.kt
View File

@ -1,176 +0,0 @@
package inr.numass.viewer
import hep.dataforge.context.ContextAware
import hep.dataforge.meta.Meta
import hep.dataforge.names.Name
import hep.dataforge.storage.tables.TableLoader
import hep.dataforge.tables.Adapters
import hep.dataforge.tables.ListTable
import hep.dataforge.tables.Table
import hep.dataforge.tables.TableFormatBuilder
import hep.dataforge.utils.Misc
import hep.dataforge.values.ValueMap
import inr.numass.data.analyzers.NumassAnalyzer
import inr.numass.data.analyzers.TimeAnalyzer
import inr.numass.data.api.NumassPoint
import inr.numass.data.api.NumassSet
import inr.numass.data.storage.NumassDataLoader
import javafx.beans.property.SimpleObjectProperty
import javafx.collections.FXCollections
import javafx.collections.ObservableList
import javafx.collections.ObservableMap
import kotlinx.coroutines.*
import tornadofx.*
import java.nio.file.*
import java.nio.file.attribute.BasicFileAttributes
import kotlin.math.floor
class DataController : Controller(), ContextAware {
override val context get() = app.context
val analyzer = TimeAnalyzer()
inner class CachedPoint(point: NumassPoint) {
val length = point.length
val voltage = point.voltage
val index = point.index
val meta = point.meta
val channelSpectra: Deferred<Map<Int, Table>> = context.async(start = CoroutineStart.LAZY) {
point.channels.mapValues { (_, value) -> analyzer.getAmplitudeSpectrum(value) }
}
val spectrum: Deferred<Table> = context.async(start = CoroutineStart.LAZY){
analyzer.getAmplitudeSpectrum(point)
}
val timeSpectrum: Deferred<Table> = context.async(start = CoroutineStart.LAZY) {
val cr = spectrum.await().sumOf {
it.getValue(NumassAnalyzer.COUNT_KEY).int
}.toDouble() / point.length.toMillis() * 1000
val binNum = 200
//inputMeta.getInt("binNum", 1000);
val binSize = 1.0 / cr * 10 / binNum * 1e6
//inputMeta.getDouble("binSize", 1.0 / cr * 10 / binNum * 1e6)
val format = TableFormatBuilder()
.addNumber("x", Adapters.X_VALUE_KEY)
.addNumber(NumassAnalyzer.COUNT_KEY, Adapters.Y_VALUE_KEY)
.build()
ListTable.Builder(format).rows(
analyzer.getEventsWithDelay(point, Meta.empty())
.map { it.second.toDouble() / 1000.0 }
.groupBy { floor(it / binSize) }
.toSortedMap()
.map {
ValueMap.ofPairs("x" to it.key, "count" to it.value.count())
}
).build()
}
}
private val cache = Misc.getLRUCache<Name, CachedPoint>(400)
fun getCachedPoint(id: Name, point: NumassPoint): CachedPoint = cache.getOrPut(id) { CachedPoint(point) }
fun getSpectrumAsync(id: Name, point: NumassPoint): Deferred<Table> =
getCachedPoint(id, point).spectrum
suspend fun getChannelSpectra(id: Name, point: NumassPoint): Map<Int, Table> =
getCachedPoint(id, point).channelSpectra.await()
val sets: ObservableMap<Name, NumassSet> = FXCollections.observableHashMap()
val points: ObservableMap<Name, CachedPoint> = FXCollections.observableHashMap()
val sc: ObservableMap<Name, TableLoader> = FXCollections.observableHashMap()
val files: ObservableList<Path> = FXCollections.observableArrayList()
val watchPathProperty = SimpleObjectProperty<Path?>()
private var watchJob: Job? = null
init {
watchPathProperty.onChange { watchPath ->
watchJob?.cancel()
if (watchPath != null) {
Files.list(watchPath).toList()
.filter {
!Files.isDirectory(it) && it.fileName.toString()
.startsWith(NumassDataLoader.POINT_FRAGMENT_NAME)
}
.sortedBy { file ->
val attr = Files.readAttributes(file, BasicFileAttributes::class.java)
attr.creationTime()
}.forEach { path ->
try {
runLater {
files.add(path)
}
} catch (x: Throwable) {
app.context.logger.error("Error during dynamic point read", x)
}
}
val watcher = watchPath.fileSystem.newWatchService()
watchJob = app.context.launch(Dispatchers.IO) {
watcher.use { watcher ->
watchPath.register(watcher, StandardWatchEventKinds.ENTRY_CREATE)
while (isActive) {
val key: WatchKey = watcher.take()
for (event: WatchEvent<*> in key.pollEvents()) {
if (event.kind() == StandardWatchEventKinds.ENTRY_CREATE) {
val path: Path = event.context() as Path
runLater {
files.add(watchPath.resolve(path))
}
}
}
key.reset()
}
}
}
}
}
}
fun clear() {
cache.clear()
sets.clear()
points.clear()
sc.clear()
watchPathProperty.set(null)
}
fun addPoint(id: Name, point: NumassPoint): CachedPoint {
val newPoint = getCachedPoint(id, point)
points[id] = newPoint
return newPoint
}
fun addSet(id: Name, set: NumassSet) {
sets[id] = set
}
fun addSc(id: Name, set: TableLoader) {
sc[id] = set
}
fun remove(id: Name) {
points.remove(id)
sets.remove(id)
sc.remove(id)
}
//
// fun addAllPoints(points: Map<String, NumassPoint>) {
// TODO()
// }
}

93
numass-viewer/src/main/kotlin/inr/numass/viewer/DirectoryWatchView.kt
View File

@ -1,93 +0,0 @@
package inr.numass.viewer
import hep.dataforge.asName
import hep.dataforge.fx.dfIconView
import hep.dataforge.io.envelopes.Envelope
import hep.dataforge.names.AlphanumComparator
import hep.dataforge.names.Name
import inr.numass.data.NumassDataUtils
import inr.numass.data.NumassEnvelopeType
import inr.numass.data.api.NumassPoint
import inr.numass.data.storage.NumassDataLoader
import kotlinx.coroutines.launch
import tornadofx.*
import java.nio.file.Path
class DirectoryWatchView : View(title = "Numass storage", icon = dfIconView) {
private val dataController by inject<DataController>()
private val ampView: AmplitudeView by inject()
private val timeView: TimeView by inject()
// private val files: ObservableList<DataController.CachedPoint> =
// FXCollections.observableArrayList<DataController.CachedPoint>().apply {
// bind(dataController.points) { _, v -> v }
// }
private fun readPointFile(path: Path): NumassPoint {
val envelope: Envelope = NumassEnvelopeType.infer(path)?.reader?.read(path)
?: kotlin.error("Can't read point file")
return NumassDataUtils.read(envelope)
}
//private class PointContainer(val path: Path, val checkedProperty: BooleanProperty = SimpleBooleanProperty())
override val root = splitpane {
listview(dataController.files.sorted { l, r -> AlphanumComparator.compare(l.toString(), r.toString()) }) {
cellFormat { path: Path ->
if (path.fileName.toString().startsWith(NumassDataLoader.POINT_FRAGMENT_NAME)) {
val name = Name.of(path.map { it.toString().asName() })
text = null
graphic = checkbox(path.fileName.toString()).apply {
isSelected = dataController.points.containsKey(name)
selectedProperty().onChange {
if (it) {
app.context.launch {
dataController.addPoint(name, readPointFile(path))
}
} else {
dataController.remove(name)
}
}
}
// app.context.launch {
// val point = readPointFile(path)
// val cachedPoint = dataController.addPoint(path.toString().asName(), point)
//
// //val point = dataController.getCachedPoint(value.toString())
// withContext(Dispatchers.JavaFx) {
// contextMenu = ContextMenu().apply {
// item("Info") {
// action {
// PointInfoView(cachedPoint).openModal(escapeClosesWindow = true)
// }
// }
// }
// }
// }
} else {
text = path.fileName.toString()
graphic = null
contextMenu = null
}
}
}
tabpane {
tab("Amplitude spectra") {
content = ampView.root
isClosable = false
//visibleWhen(ampView.isEmpty.not())
}
tab("Time spectra") {
content = timeView.root
isClosable = false
//visibleWhen(ampView.isEmpty.not())
}
}
setDividerPosition(0, 0.3);
}
}

31
numass-viewer/src/main/kotlin/inr/numass/viewer/HVView.kt
View File

@ -11,8 +11,11 @@ import hep.dataforge.plots.data.TimePlot
import hep.dataforge.plots.jfreechart.JFreeChartFrame
import hep.dataforge.tables.Adapters
import inr.numass.data.api.NumassSet
import javafx.collections.FXCollections
import javafx.collections.MapChangeListener
import javafx.collections.ObservableMap
import javafx.scene.image.ImageView
import kotlinx.coroutines.Dispatchers
import tornadofx.*
@ -21,9 +24,6 @@ import tornadofx.*
*/
class HVView : View(title = "High voltage time plot", icon = ImageView(dfIcon)) {
private val dataController by inject<DataController>()
private val data get() = dataController.sets
private val frame = JFreeChartFrame().configure {
"xAxis.title" to "time"
"xAxis.type" to "time"
@ -44,22 +44,23 @@ class HVView : View(title = "High voltage time plot", icon = ImageView(dfIcon))
center = PlotContainer(frame).root
}
private val data: ObservableMap<String, NumassSet> = FXCollections.observableHashMap()
val isEmpty = booleanBinding(data) { data.isEmpty() }
init {
data.addListener { change: MapChangeListener.Change<out Name, out NumassSet> ->
data.addListener { change: MapChangeListener.Change<out String, out NumassSet> ->
isEmpty.invalidate()
if (change.wasRemoved()) {
frame.plots.remove(change.key)
frame.plots.remove(Name.ofSingle(change.key))
}
if (change.wasAdded()) {
runLater { container.progress = -1.0 }
runGoal(app.context,"hvData[${change.key}]") {
runGoal(app.context,"hvData[${change.key}]", Dispatchers.IO) {
change.valueAdded.getHvData()
} ui { table ->
if (table != null) {
((frame[change.key.toString()] as? DataPlot)
?: DataPlot(change.key.toString(), adapter = Adapters.buildXYAdapter("timestamp", "value")).also { frame.add(it) })
((frame[change.key] as? DataPlot)
?: DataPlot(change.key, adapter = Adapters.buildXYAdapter("timestamp", "value")).also { frame.add(it) })
.fillData(table)
}
@ -70,4 +71,18 @@ class HVView : View(title = "High voltage time plot", icon = ImageView(dfIcon))
}
}
operator fun set(id: String, set: NumassSet) {
data[id] = set
}
fun remove(id: String) {
data.remove(id);
}
fun clear() {
data.clear()
}
}

223
numass-viewer/src/main/kotlin/inr/numass/viewer/MainView.kt
View File

@ -1,6 +1,5 @@
package inr.numass.viewer
import hep.dataforge.asName
import hep.dataforge.fx.dfIconView
import hep.dataforge.fx.except
import hep.dataforge.fx.runGoal
@ -30,7 +29,7 @@ import java.nio.file.Path
class MainView : View(title = "Numass viewer", icon = dfIconView) {
private val dataController by inject<DataController>()
private val pointCache by inject<PointCache>()
val storageView by inject<StorageView>()
@ -39,123 +38,16 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
// addLogHandler(context.logger)
// }
private val pathProperty = SimpleObjectProperty<Path?>()
private val pathProperty = SimpleObjectProperty<Path>()
private var path: Path by pathProperty
private val contentViewProperty = SimpleObjectProperty<UIComponent>()
private var contentView: UIComponent? by contentViewProperty
private val spectrumView by inject<SpectrumView>()
private val amplitudeView by inject<AmplitudeView>()
private val directoryWatchView by inject<DirectoryWatchView>()
init {
contentViewProperty.onChange {
root.center = it?.root
}
}
private fun loadDirectory(path: Path){
app.context.launch {
dataController.clear()
runLater {
pathProperty.set(path)
contentView = null
}
if (Files.exists(path.resolve(NumassDataLoader.META_FRAGMENT_NAME))) {
//build set view
runGoal(app.context, "viewer.load.set[$path]") {
title = "Load set ($path)"
message = "Building numass set..."
NumassDataLoader(app.context, null, path.fileName.toString(), path)
} ui { loader: NumassDataLoader ->
contentView = spectrumView
dataController.addSet(loader.name.asName(), loader)
} except {
alert(
type = Alert.AlertType.ERROR,
header = "Error during set loading",
content = it.toString()
).show()
}
} else {
//build storage
app.context.launch {
val storageElement =
NumassDirectory.INSTANCE.read(app.context, path) as? Storage
withContext(Dispatchers.JavaFx) {
contentView = storageView
storageView.storageProperty.set(storageElement)
}
}
}
}
}
private fun loadFile(path: Path){
app.context.launch {
dataController.clear()
runLater {
pathProperty.set(path)
contentView = null
}
//Reading individual file
val envelope = try {
NumassFileEnvelope(path)
} catch (ex: Exception) {
runLater {
alert(
type = Alert.AlertType.ERROR,
header = "Can't load DF envelope from file $path",
content = ex.toString()
).show()
}
null
}
envelope?.let {
//try to read as point
val point = NumassDataUtils.read(it)
runLater {
contentView = amplitudeView
dataController.addPoint(path.fileName.toString().asName(), point)
}
}
}
}
private fun watchDirectory(path: Path){
app.context.launch {
dataController.clear()
runLater {
pathProperty.set(path)
contentView = directoryWatchView
dataController.watchPathProperty.set(path)
}
}
}
var contentView: UIComponent? by contentViewProperty
override val root = borderpane {
prefHeight = 600.0
prefWidth = 800.0
top {
//bypass top configuration bar and only watch directory
app.parameters.named["directory"]?.let{ pathString ->
val path = Path.of(pathString).toAbsolutePath()
watchDirectory(path)
toolbar{
prefHeight = 40.0
label("Watching $path") {
padding = Insets(0.0, 0.0, 0.0, 10.0)
font = Font.font("System Bold", 13.0)
}
pane {
hgrow = Priority.ALWAYS
}
}
return@top
}
toolbar {
prefHeight = 40.0
button("Load directory") {
@ -179,7 +71,12 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
if (rootDir != null) {
NumassProperties.setNumassProperty("numass.viewer.lastPath", rootDir.absolutePath)
loadDirectory(rootDir.toPath())
app.context.launch {
runLater {
path = rootDir.toPath()
}
load(rootDir.toPath())
}
}
} catch (ex: Exception) {
NumassProperties.setNumassProperty("numass.viewer.lastPath", null)
@ -204,38 +101,13 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
if (file != null) {
NumassProperties.setNumassProperty("numass.viewer.lastPath",
file.parentFile.absolutePath)
loadFile(file.toPath())
app.context.launch {
runLater {
path = file.toPath()
}
} catch (ex: Exception) {
NumassProperties.setNumassProperty("numass.viewer.lastPath", null)
error("Error", content = "Failed to laod file with message: ${ex.message}")
load(file.toPath())
}
}
}
button("Watch directory") {
action {
val chooser = DirectoryChooser()
chooser.title = "Select directory to watch"
val homeDir = NumassProperties.getNumassProperty("numass.viewer.lastPath")
try {
if (homeDir == null) {
chooser.initialDirectory = File(".").absoluteFile
} else {
val file = File(homeDir)
if (file.isDirectory) {
chooser.initialDirectory = file
} else {
chooser.initialDirectory = file.parentFile
}
}
val dir = chooser.showDialog(primaryStage.scene.window)
if (dir != null) {
NumassProperties.setNumassProperty("numass.viewer.lastPath", dir.absolutePath)
watchDirectory(dir.toPath())
}
} catch (ex: Exception) {
NumassProperties.setNumassProperty("numass.viewer.lastPath", null)
error("Error", content = "Failed to laod file with message: ${ex.message}")
@ -259,4 +131,71 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
bottom = statusBar
}
init {
contentViewProperty.onChange {
root.center = it?.root
}
}
private suspend fun load(path: Path) {
runLater {
contentView = null
}
pointCache.clear()
if (Files.isDirectory(path)) {
if (Files.exists(path.resolve(NumassDataLoader.META_FRAGMENT_NAME))) {
//build set view
runGoal(app.context, "viewer.load.set[$path]", Dispatchers.IO) {
title = "Load set ($path)"
message = "Building numass set..."
NumassDataLoader(app.context, null, path.fileName.toString(), path)
} ui { loader: NumassDataLoader ->
contentView = SpectrumView().apply {
clear()
set(loader.name, loader)
}
} except {
alert(
type = Alert.AlertType.ERROR,
header = "Error during set loading",
content = it.toString()
).show()
}
} else {
//build storage
app.context.launch {
val storageElement = NumassDirectory.INSTANCE.read(app.context, path) as Storage
withContext(Dispatchers.JavaFx) {
contentView = storageView
storageView.storageProperty.set(storageElement)
}
}
}
} else {
//Reading individual file
val envelope = try {
NumassFileEnvelope(path)
} catch (ex: Exception) {
runLater {
alert(
type = Alert.AlertType.ERROR,
header = "Can't load DF envelope from file $path",
content = ex.toString()
).show()
}
null
}
envelope?.let {
//try to read as point
val point = NumassDataUtils.read(it)
runLater {
contentView = AmplitudeView().apply {
set(path.fileName.toString(), point)
}
}
}
}
}
}

64
numass-viewer/src/main/kotlin/inr/numass/viewer/PointCache.kt Normal file
View File

@ -0,0 +1,64 @@
/*
* Copyright 2018 Alexander Nozik.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package inr.numass.viewer
import hep.dataforge.tables.Table
import hep.dataforge.utils.Misc
import inr.numass.data.analyzers.SimpleAnalyzer
import inr.numass.data.api.NumassPoint
import kotlinx.coroutines.Deferred
import kotlinx.coroutines.Dispatchers
import kotlinx.coroutines.async
import tornadofx.*
private val analyzer = SimpleAnalyzer()
class PointCache : Controller() {
private val context = app.context
inner class CachedPoint(point: NumassPoint) {
val length = point.length
val voltage = point.voltage
val meta = point.meta
val channelSpectra: Deferred<Map<Int, Table>> = context.async(Dispatchers.IO) {
point.channels.mapValues { (_, value) -> analyzer.getAmplitudeSpectrum(value) }
}
val spectrum: Deferred<Table> = context.async(Dispatchers.IO) {
analyzer.getAmplitudeSpectrum(point)
}
}
private val cache = Misc.getLRUCache<String, CachedPoint>(400)
fun getCachedPoint(id: String,point: NumassPoint): CachedPoint = cache.getOrPut(id) { CachedPoint(point) }
fun getSpectrumAsync(id: String, point: NumassPoint): Deferred<Table> =
getCachedPoint(id, point).spectrum
suspend fun getChannelSpectra(id: String, point: NumassPoint): Map<Int, Table> =
getCachedPoint(id, point).channelSpectra.await()
fun clear(){
cache.clear()
}
}

2
numass-viewer/src/main/kotlin/inr/numass/viewer/PointInfoView.kt
View File

@ -9,7 +9,7 @@ import tornadofx.*
import tornadofx.controlsfx.borders
import tornadofx.controlsfx.toGlyph
class PointInfoView(val cachedPoint: DataController.CachedPoint) : MetaViewer(cachedPoint.meta) {
class PointInfoView(val cachedPoint: PointCache.CachedPoint) : MetaViewer(cachedPoint.meta) {
val countProperty = SimpleIntegerProperty(0)
var count by countProperty

36
numass-viewer/src/main/kotlin/inr/numass/viewer/SlowControlView.kt
View File

@ -5,15 +5,18 @@ import hep.dataforge.fx.dfIcon
import hep.dataforge.fx.plots.PlotContainer
import hep.dataforge.fx.runGoal
import hep.dataforge.fx.ui
import hep.dataforge.names.Name
import hep.dataforge.plots.PlotGroup
import hep.dataforge.plots.data.DataPlot
import hep.dataforge.plots.jfreechart.JFreeChartFrame
import hep.dataforge.storage.tables.TableLoader
import hep.dataforge.storage.tables.asTable
import hep.dataforge.tables.Adapters
import hep.dataforge.tables.Table
import javafx.collections.FXCollections
import javafx.collections.MapChangeListener
import javafx.collections.ObservableMap
import javafx.scene.image.ImageView
import kotlinx.coroutines.Dispatchers
import tornadofx.*
/**
@ -21,9 +24,6 @@ import tornadofx.*
*/
class SlowControlView : View(title = "Numass slow control view", icon = ImageView(dfIcon)) {
private val dataController by inject<DataController>()
private val data get() = dataController.sc
private val plot = JFreeChartFrame().configure {
"xAxis.type" to "time"
"yAxis.type" to "log"
@ -33,21 +33,22 @@ class SlowControlView : View(title = "Numass slow control view", icon = ImageVie
center = PlotContainer(plot).root
}
val data: ObservableMap<String, TableLoader> = FXCollections.observableHashMap();
val isEmpty = booleanBinding(data) {
data.isEmpty()
}
init {
data.addListener { change: MapChangeListener.Change<out Name, out TableLoader> ->
data.addListener { change: MapChangeListener.Change<out String, out TableLoader> ->
if (change.wasRemoved()) {
plot.remove(change.key.toString())
plot.remove(change.key)
}
if (change.wasAdded()) {
runGoal(app.context,"loadTable[${change.key}]") {
val plotData = change.valueAdded.asTable().await()
runGoal(app.context,"loadTable[${change.key}]", Dispatchers.IO) {
val plotData = getData(change.valueAdded)
val names = plotData.format.namesAsArray().filter { it != "timestamp" }
val group = PlotGroup(change.key.toString())
val group = PlotGroup(change.key)
names.forEach {
val adapter = Adapters.buildXYAdapter("timestamp", it);
@ -67,4 +68,21 @@ class SlowControlView : View(title = "Numass slow control view", icon = ImageVie
}
}
private suspend fun getData(loader: TableLoader): Table {
//TODO add query
return loader.asTable().await()
}
operator fun set(id: String, loader: TableLoader) {
this.data[id] = loader
}
fun remove(id: String) {
this.data.remove(id)
}
fun clear(){
data.clear()
}
}

45
numass-viewer/src/main/kotlin/inr/numass/viewer/SpectrumView.kt
View File

@ -10,13 +10,17 @@ import hep.dataforge.tables.Adapters
import inr.numass.data.analyzers.countInWindow
import inr.numass.data.api.NumassSet
import javafx.beans.property.SimpleIntegerProperty
import javafx.collections.FXCollections
import javafx.collections.MapChangeListener
import javafx.collections.ObservableMap
import javafx.geometry.Insets
import javafx.geometry.Orientation
import javafx.scene.image.ImageView
import javafx.util.converter.NumberStringConverter
import kotlinx.coroutines.*
import kotlinx.coroutines.Dispatchers
import kotlinx.coroutines.javafx.JavaFx
import kotlinx.coroutines.launch
import kotlinx.coroutines.withContext
import org.controlsfx.control.RangeSlider
import tornadofx.*
import java.util.concurrent.atomic.AtomicInteger
@ -29,8 +33,7 @@ import kotlin.math.sqrt
*/
class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIcon)) {
private val dataController by inject<DataController>()
private val data get() = dataController.sets
private val pointCache by inject<PointCache>()
private val frame = JFreeChartFrame().configure {
"xAxis.title" to "U"
@ -41,6 +44,7 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
}
private val container = PlotContainer(frame)
private val loChannelProperty = SimpleIntegerProperty(500).apply {
addListener { _ -> updateView() }
}
@ -51,7 +55,9 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
}
private var upChannel by upChannelProperty
private val isEmpty = booleanBinding(data) { data.isEmpty() }
private val data: ObservableMap<String, NumassSet> = FXCollections.observableHashMap()
val isEmpty = booleanBinding(data) { data.isEmpty() }
override val root = borderpane {
top {
@ -97,9 +103,9 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
}
init {
data.addListener { change: MapChangeListener.Change<out Name, out NumassSet> ->
data.addListener { change: MapChangeListener.Change<out String, out NumassSet> ->
if (change.wasRemoved()) {
frame.plots.remove(Name.ofSingle(change.key.toString()))
frame.plots.remove(Name.ofSingle(change.key))
}
if (change.wasAdded()) {
@ -115,19 +121,18 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
val totalProgress = data.values.stream().mapToInt { it.points.size }.sum()
data.forEach { (name, set) ->
val plot: DataPlot = frame.plots[name] as DataPlot? ?: DataPlot(name.toString()).apply {
frame.add(this)
}
val plot: DataPlot =
frame.plots[Name.ofSingle(name)] as DataPlot? ?: DataPlot(name).apply { frame.add(this) }
app.context.launch {
val points = set.points.map { point ->
dataController.getCachedPoint(Name.join("$name","${point.voltage}[${point.index}]"), point).also {
it.spectrum.start()
}
val points = set.points.map {
pointCache.getCachedPoint("$name/${it.voltage}[${it.index}]", it)
}.map { cachedPoint ->
val count = cachedPoint.spectrum.await().countInWindow(loChannel.toShort(), upChannel.toShort())
val seconds = cachedPoint.length.toMillis() / 1000.0
launch(Dispatchers.JavaFx) {
container.progress = progress.incrementAndGet().toDouble() / totalProgress
}
Adapters.buildXYDataPoint(
cachedPoint.voltage,
(count / seconds),
@ -141,4 +146,16 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
}
}
}
operator fun set(key: String, value: NumassSet) {
data[key] = value
}
fun remove(key: String) {
data.remove(key)
}
fun clear() {
data.clear()
}
}

118
numass-viewer/src/main/kotlin/inr/numass/viewer/StorageView.kt
View File

@ -1,19 +1,15 @@
package inr.numass.viewer
import hep.dataforge.asName
import hep.dataforge.fx.dfIconView
import hep.dataforge.fx.meta.MetaViewer
import hep.dataforge.meta.Meta
import hep.dataforge.meta.Metoid
import hep.dataforge.names.AlphanumComparator
import hep.dataforge.names.Name
import hep.dataforge.storage.Storage
import hep.dataforge.storage.files.FileTableLoader
import hep.dataforge.storage.tables.TableLoader
import inr.numass.data.NumassDataUtils
import inr.numass.data.api.NumassPoint
import inr.numass.data.api.NumassSet
import inr.numass.data.storage.EnvelopeStorageElement
import inr.numass.data.storage.NumassDataLoader
import javafx.beans.property.SimpleBooleanProperty
import javafx.beans.property.SimpleObjectProperty
@ -29,7 +25,7 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
val storageProperty = SimpleObjectProperty<Storage>()
val storage by storageProperty
private val dataController by inject<DataController>()
private val pointCache by inject<PointCache>()
private val ampView: AmplitudeView by inject()
private val timeView: TimeView by inject()
@ -37,15 +33,27 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
private val hvView: HVView by inject()
private val scView: SlowControlView by inject()
private inner class Container(val name: Name, val content: Any) {
// private var watcher: WatchService? = null
fun clear() {
//watcher?.close()
ampView.clear()
timeView.clear()
spectrumView.clear()
hvView.clear()
scView.clear()
}
private inner class Container(val id: String, val content: Any) {
val checkedProperty = SimpleBooleanProperty(false)
var checked by checkedProperty
val infoView: UIComponent by lazy {
when (content) {
is NumassPoint -> PointInfoView(dataController.getCachedPoint(name, content))
is Metoid -> MetaViewer(content.meta, title = "Meta view: $name")
else -> MetaViewer(Meta.empty(), title = "Meta view: $name")
is NumassPoint -> PointInfoView(pointCache.getCachedPoint(id, content))
is Metoid -> MetaViewer(content.meta, title = "Meta view: $id")
else -> MetaViewer(Meta.empty(), title = "Meta view: $id")
}
}
@ -56,23 +64,27 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
when (content) {
is NumassPoint -> {
if (selected) {
dataController.addPoint(name, content)
ampView[id] = content
timeView[id] = content
} else {
dataController.remove(name)
ampView.remove(id)
timeView.remove(id)
}
}
is NumassSet -> {
if (selected) {
dataController.addSet(name, content)
spectrumView[id] = content
hvView[id] = content
} else {
dataController.remove(name)
spectrumView.remove(id)
hvView.remove(id)
}
}
is TableLoader -> {
if (selected) {
dataController.addSc(name, content)
scView[id] = content
} else {
dataController.remove(name)
scView.remove(id)
}
}
}
@ -85,19 +97,9 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
val children: ObservableList<Container>? by lazy {
when (content) {
is Storage -> content.getChildren().mapNotNull {
if (it is EnvelopeStorageElement) {
it.envelope?.let { envelope ->
try {
buildContainer(NumassDataUtils.read(envelope), this)
} catch (ex: Exception) {
null
}
}
} else {
is Storage -> content.getChildren().map {
buildContainer(it, this)
}
}.sortedWith(Comparator.comparing({ it.name.toString() }, AlphanumComparator)).asObservable()
}.sortedWith(Comparator.comparing({ it.id }, AlphanumComparator)).asObservable()
is NumassSet -> content.points
.sortedBy { it.index }
.map { buildContainer(it, this) }
@ -110,6 +112,38 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
private var watchJob: Job? = null
// private fun toggleWatch(watch: Boolean) {
// if (watch) {
// if (watchJob != null && content is NumassDataLoader) {
// watchJob = app.context.launch(Dispatchers.IO) {
// val key: WatchKey = content.path.register(watcher!!, ENTRY_CREATE)
// coroutineContext[Job]?.invokeOnCompletion {
// key.cancel()
// }
// while (watcher != null && isActive) {
// try {
// key.pollEvents().forEach { event ->
// if (event.kind() == ENTRY_CREATE) {
// val path: Path = event.context() as Path
// if (path.fileName.toString().startsWith(NumassDataLoader.POINT_FRAGMENT_NAME)) {
// val envelope: Envelope = NumassEnvelopeType.infer(path)?.reader?.read(path)
// ?: kotlin.error("Can't read point file")
// val point = NumassDataUtils.read(envelope)
// children!!.add(buildContainer(point, this@Container))
// }
// }
// }
// } catch (x: Throwable) {
// app.context.logger.error("Error during dynamic point read", x)
// }
// }
// }
// }
// } else {
// watchJob?.cancel()
// watchJob = null
// }
// }
}
@ -117,16 +151,21 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
treeview<Container> {
//isShowRoot = false
storageProperty.onChange { storage ->
dataController.clear()
clear()
if (storage == null) return@onChange
root = TreeItem(Container(storage.name.asName(), storage))
root = TreeItem(Container(storage.name, storage))
root.isExpanded = true
lazyPopulate(leafCheck = {
!it.value.hasChildren
}) {
it.value.children
}
// watcher?.close()
// watcher = if (storage is FileStorage) {
// storage.path.fileSystem.newWatchService()
// } else {
// null
// }
}
cellFormat { value: Container ->
@ -154,7 +193,7 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
}
}
else -> {
text = value.name.toString()
text = value.id
graphic = null
}
}
@ -169,6 +208,11 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
value.infoView.openModal(escapeClosesWindow = true)
}
}
// if(value.content is NumassDataLoader) {
// checkmenuitem("Watch") {
// selectedProperty().bindBidirectional(value.watchedProperty)
// }
// }
}
}
}
@ -212,19 +256,19 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
private fun buildContainer(content: Any, parent: Container): Container =
when (content) {
is Storage -> Container(content.fullName, content)
is Storage -> Container(content.fullName.toString(), content)
is NumassSet -> {
val id: Name = if (content is NumassDataLoader) {
content.fullName
val id: String = if (content is NumassDataLoader) {
content.fullName.unescaped
} else {
content.name.asName()
content.name
}
Container(id, content)
}
is NumassPoint -> {
Container("${parent.name}/${content.voltage}[${content.index}]".asName(), content)
Container("${parent.id}/${content.voltage}[${content.index}]", content)
}
is FileTableLoader -> Container(Name.of(content.path.map { it.toString().asName() }), content)
is FileTableLoader -> Container(content.path.toString(), content)
else -> throw IllegalArgumentException("Unknown content type: ${content::class.java}");
}
}

134
numass-viewer/src/main/kotlin/inr/numass/viewer/TimeView.kt
View File

@ -2,28 +2,30 @@ package inr.numass.viewer
import hep.dataforge.configure
import hep.dataforge.fx.dfIcon
import hep.dataforge.fx.except
import hep.dataforge.fx.plots.PlotContainer
import hep.dataforge.fx.runGoal
import hep.dataforge.fx.ui
import hep.dataforge.goals.Goal
import hep.dataforge.meta.Meta
import hep.dataforge.names.Name
import hep.dataforge.plots.Plottable
import hep.dataforge.plots.data.DataPlot
import hep.dataforge.plots.jfreechart.JFreeChartFrame
import hep.dataforge.tables.Adapters
import hep.dataforge.tables.Table
import hep.dataforge.values.ValueMap
import inr.numass.data.analyzers.TimeAnalyzer
import inr.numass.data.api.NumassPoint
import javafx.beans.Observable
import javafx.beans.binding.DoubleBinding
import javafx.collections.FXCollections
import javafx.collections.MapChangeListener
import javafx.collections.ObservableMap
import javafx.scene.image.ImageView
import kotlinx.coroutines.Dispatchers
import kotlinx.coroutines.Job
import kotlinx.coroutines.javafx.JavaFx
import kotlinx.coroutines.launch
import kotlinx.coroutines.withContext
import tornadofx.*
class TimeView : View(title = "Numass time spectrum plot", icon = ImageView(dfIcon)) {
private val dataController by inject<DataController>()
private val frame = JFreeChartFrame().configure {
"title" to "Time plot"
node("xAxis") {
@ -45,65 +47,129 @@ class TimeView : View(title = "Numass time spectrum plot", icon = ImageView(dfIc
}.setType<DataPlot>()
}
// val stepProperty = SimpleDoubleProperty()
// var step by stepProperty
//
// private val container = PlotContainer(frame).apply {
// val binningSelector: ChoiceBox<Int> = ChoiceBox(FXCollections.observableArrayList(1, 5, 10, 20, 50)).apply {
// minWidth = 0.0
// selectionModel.selectLast()
// stepProperty.bind(this.selectionModel.selectedItemProperty())
// }
// addToSideBar(0, binningSelector)
// }
private val container = PlotContainer(frame)
//private val data: ObservableMap<String, NumassPoint> = FXCollections.observableHashMap()
private val data get() = dataController.points
private val plotJobs: ObservableMap<String, Job> = FXCollections.observableHashMap()
private val data: ObservableMap<String, NumassPoint> = FXCollections.observableHashMap()
private val plots: ObservableMap<String, Goal<Plottable>> = FXCollections.observableHashMap()
val isEmpty = booleanBinding(data) { isEmpty() }
private val progress = object : DoubleBinding() {
init {
bind(plotJobs)
bind(plots)
}
override fun computeValue(): Double = plotJobs.values.count { it.isCompleted }.toDouble() / data.size
override fun computeValue(): Double {
return plots.values.count { it.isDone }.toDouble() / data.size;
}
}
init {
data.addListener(MapChangeListener { change ->
val key = change.key.toString()
if (change.wasAdded()) {
replotOne(key, change.valueAdded)
} else if(change.wasRemoved()){
plotJobs[key]?.cancel()
plotJobs.remove(key)
frame.plots.remove(Name.ofSingle(key))
progress.invalidate()
data.addListener { _: Observable ->
invalidate()
}
})
}
override val root = borderpane {
center = container.root
}
private fun replotOne(key: String, point: DataController.CachedPoint) {
plotJobs[key]?.cancel()
plotJobs[key] = app.context.launch {
try {
val histogram: Table = point.timeSpectrum.await()
/**
* Put or replace current plot with name `key`
*/
operator fun set(key: String, point: NumassPoint) {
data[key] = point
}
val plot = DataPlot(key, adapter = Adapters.buildXYAdapter("x", "count"))
fun addAll(data: Map<String, NumassPoint>) {
this.data.putAll(data);
}
private val analyzer = TimeAnalyzer();
private fun invalidate() {
data.forEach { key, point ->
plots.getOrPut(key) {
runGoal<Plottable>(app.context, "loadAmplitudeSpectrum_$key", Dispatchers.IO) {
val initialEstimate = analyzer.analyze(point)
val cr = initialEstimate.getDouble("cr")
val binNum = 200//inputMeta.getInt("binNum", 1000);
val binSize = 1.0 / cr * 10 / binNum * 1e6//inputMeta.getDouble("binSize", 1.0 / cr * 10 / binNum * 1e6)
val histogram = analyzer.getEventsWithDelay(point, Meta.empty())
.map { it.second.toDouble() / 1000.0 }
.groupBy { Math.floor(it / binSize) }
.toSortedMap()
.map {
ValueMap.ofPairs("x" to it.key, "count" to it.value.count())
}
DataPlot(key, adapter = Adapters.buildXYAdapter("x", "count"))
.configure {
"showLine" to true
"showSymbol" to false
"showErrors" to false
"connectionType" to "step"
}.fillData(histogram)
withContext(Dispatchers.JavaFx) {
} ui { plot ->
frame.add(plot)
}
} finally {
withContext(Dispatchers.JavaFx) {
progress.invalidate()
} except {
progress.invalidate()
}
}
plots.keys.filter { !data.containsKey(it) }.forEach { remove(it) }
}
}
fun clear() {
data.clear()
plots.values.forEach {
it.cancel()
}
plots.clear()
invalidate()
}
/**
* Remove the plot and cancel loading task if it is in progress.
*/
fun remove(name: String) {
frame.plots.remove(Name.ofSingle(name))
plots[name]?.cancel()
plots.remove(name)
data.remove(name)
progress.invalidate()
}
/**
* Set frame content to the given map. All keys not in the map are removed.
*/
fun setAll(map: Map<String, NumassPoint>) {
plots.clear();
//Remove obsolete keys
data.keys.filter { !map.containsKey(it) }.forEach {
remove(it)
}
this.addAll(map);
}
}

2
numass-viewer/src/main/kotlin/inr/numass/viewer/Viewer.kt
View File

@ -8,7 +8,6 @@ import hep.dataforge.fx.dfIcon
import javafx.stage.Stage
import org.slf4j.LoggerFactory
import tornadofx.*
import kotlin.system.exitProcess
/**
* Created by darksnake on 14-Apr-17.
@ -29,7 +28,6 @@ class Viewer : App(MainView::class) {
context.close()
Global.terminate();
super.stop()
exitProcess(0)
}
}

68
numass-viewer/src/main/kotlin/inr/numass/viewer/test/ComponentTest.kt Normal file
View File

@ -0,0 +1,68 @@
package inr.numass.viewer.test
import hep.dataforge.context.Global
import hep.dataforge.fx.dfIcon
import hep.dataforge.nullable
import hep.dataforge.tables.Table
import inr.numass.data.api.NumassPoint
import inr.numass.data.api.NumassSet
import inr.numass.data.storage.NumassDirectory
import inr.numass.viewer.AmplitudeView
import inr.numass.viewer.HVView
import inr.numass.viewer.SpectrumView
import javafx.application.Application
import javafx.scene.image.ImageView
import kotlinx.coroutines.launch
import tornadofx.*
import java.io.File
import java.util.concurrent.ConcurrentHashMap
class ViewerComponentsTestApp : App(ViewerComponentsTest::class)
class ViewerComponentsTest : View(title = "Numass viewer test", icon = ImageView(dfIcon)) {
//val rootDir = File("D:\\Work\\Numass\\data\\2017_05\\Fill_2")
//val set: NumassSet = NumassStorageFactory.buildLocal(rootDir).provide("loader::set_8", NumassSet::class.java).orElseThrow { RuntimeException("err") }
private val cache: MutableMap<NumassPoint, Table> = ConcurrentHashMap()
val context = Global
val amp: AmplitudeView by inject(params = mapOf("cache" to cache))//= AmplitudeView(immutable = immutable)
val sp: SpectrumView by inject(params = mapOf("cache" to cache))
val hv: HVView by inject()
override val root = borderpane {
top {
button("Click me!") {
action {
context.launch {
val set: NumassSet = NumassDirectory.INSTANCE.read(Global, File("D:\\Work\\Numass\\data\\2017_05\\Fill_2").toPath())
?.provide("loader::set_2", NumassSet::class.java).nullable
?: kotlin.error("Error")
update(set)
}
}
}
}
center {
tabpane {
tab("amplitude", amp.root)
tab("spectrum", sp.root)
tab("hv", hv.root)
}
}
}
fun update(set: NumassSet) {
amp.setAll(set.points.filter { it.voltage != 16000.0 }.associateBy { "point_${it.voltage}" })
sp["test"] = set
hv[set.name] = set
}
}
fun main(args: Array<String>) {
Application.launch(ViewerComponentsTestApp::class.java, *args)
}