Create LICENSE

LICENSE

@@ -0,0 +1,201 @@
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dataforge-core/src/main/kotlin/hep/dataforge/context/PluginLoader.kt

@@ -120,7 +120,7 @@ abstract class AbstractPluginLoader : PluginLoader {
 
 
     protected fun compare(p1: PluginFactory, p2: PluginFactory): Int {
-        return Integer.compare(p1.tag.getInt("priority", 0), p2.tag.getInt("priority", 0))
+        return p1.tag.getInt("priority", 0).compareTo(p2.tag.getInt("priority", 0))
     }
 
     override fun listTags(): List<PluginTag> {

dataforge-core/src/main/kotlin/hep/dataforge/io/envelopes/DefaultEnvelopeReader.kt

@@ -88,7 +88,7 @@ open class DefaultEnvelopeReader : EnvelopeReader {
         val dataLength = tag.dataSize
         if (metaLength < 0 || dataLength < 0) {
             LoggerFactory.getLogger(javaClass).error("Can't lazy read infinite data or meta. Returning non-lazy envelope")
-            return read(file)
+            return read(Files.newInputStream(file))
         }
 
         val metaBuffer = ByteBuffer.allocate(metaLength)

dataforge-core/src/main/kotlin/hep/dataforge/names/Name.kt

@@ -215,7 +215,7 @@ interface Name : Comparable<Name> {
                 return of(segments[0])
             }
 
-            return of(Stream.of(*segments).filter { it -> !it.isEmpty() }.map<Name>{ of(it) }.toList())
+            return of(Stream.of(*segments).filter { it -> it.isNotEmpty() }.map { of(it) }.toList())
         }
 
         fun joinString(vararg segments: String): String {

dataforge-core/src/main/kotlin/hep/dataforge/values/ValueProvider.kt

@@ -31,9 +31,7 @@ interface ValueProvider {
     fun optValue(path: String): Optional<Value>
 
 
-    fun getValue(path: String): Value {
-        return optValue(path).orElseThrow<NameNotFoundException> { NameNotFoundException(path) }
-    }
+    fun getValue(path: String): Value = optValue(path).orElseThrow { NameNotFoundException(path) }
 
     @Provides(BOOLEAN_TARGET)
 

dataforge-plots/plots-jfc/src/main/kotlin/hep/dataforge/plots/jfreechart/JFreeChartFrame.kt

@@ -150,13 +150,11 @@ class JFreeChartFrame : XYPlotFrame(), FXPlotFrame, Serializable {
         return Range(meta.getDouble("lower", java.lang.Double.NEGATIVE_INFINITY), meta.getDouble("upper", java.lang.Double.POSITIVE_INFINITY))
     }
 
-    private fun getAxis(axisMeta: Meta): ValueAxis {
-        return when (axisMeta.getString("type", "number").lowercase()) {
+    private fun getAxis(axisMeta: Meta): ValueAxis = when (axisMeta.getString("type", "number").lowercase()) {
         "log" -> getLogAxis(axisMeta)
         "time" -> getDateAxis(axisMeta)
         else -> getNumberAxis(axisMeta)
     }
-    }
 
     override fun updateAxis(axisName: String, axisMeta: Meta, plotMeta: Meta) {
             val axis = getAxis(axisMeta)

dataforge-plots/src/main/kotlin/hep/dataforge/plots/PlotGroup.kt

@@ -112,37 +112,29 @@ class PlotGroup(override  val name: String, descriptor: NodeDescriptor = NodeDes
     }
 
     @ProvidesNames(PLOT_TARGET)
-    fun list(): Stream<String> {
-        return stream().map { it.first.toString() }
-    }
+    fun list(): Stream<String> = stream().map { it.first.toString() }
 
     /**
      * Recursive stream of all plots excluding intermediate nodes
      *
      * @return
      */
-    fun stream(recursive: Boolean = true): Stream<Pair<Name, Plottable>> {
-        return plots.stream().flatMap {
+    fun stream(recursive: Boolean = true): Stream<Pair<Name, Plottable>> = plots.stream().flatMap {
         if (recursive && it is PlotGroup) {
             it.stream().map { pair -> Pair(Name.ofSingle(it.name) + pair.first, pair.second) }
         } else {
             Stream.of(Pair(Name.ofSingle(it.name), it))
         }
     }
-    }
 
     @Provides(PLOT_TARGET)
-    operator fun get(name: String): Plottable? {
-        return get(Name.of(name))
-    }
+    operator fun get(name: String): Plottable? = get(Name.of(name))
 
-    operator fun get(name: Name): Plottable? {
-        return when {
-            name.length == 0 -> this
-            name.length == 1 -> plots.find { it.name == name.unescaped }
+    operator fun get(name: Name): Plottable? = when (name.length) {
+        0 -> this
+        1 -> plots.find { it.name == name.unescaped }
         else -> (get(name.cutLast()) as? PlotGroup)?.get(name.last)
     }
-    }
 
     /**
      * * Add plottable if it is absent,
@@ -203,9 +195,7 @@ class PlotGroup(override  val name: String, descriptor: NodeDescriptor = NodeDes
      *
      * @return
      */
-    override fun iterator(): Iterator<Plottable> {
-        return this.plots.iterator()
-    }
+    override fun iterator(): Iterator<Plottable> = this.plots.iterator()
 
     class Wrapper : hep.dataforge.io.envelopes.Wrapper<PlotGroup> {
 

dataforge-storage/src/main/kotlin/hep/dataforge/storage/files/FileStorage.kt

@@ -35,7 +35,10 @@ import hep.dataforge.storage.StorageManager
 import kotlinx.coroutines.async
 import kotlinx.coroutines.awaitAll
 import kotlinx.coroutines.runBlocking
-import java.nio.file.*
+import java.nio.file.Files
+import java.nio.file.Path
+import java.nio.file.Paths
+import java.nio.file.StandardOpenOption
 import kotlin.streams.asSequence
 
 /**
@@ -57,7 +60,12 @@ interface FileStorageElementType : StorageElementType, Named {
     /**
      * Read given path as [FileStorageElement] with given parent. Returns null if path does not belong to storage
      */
-    suspend fun read(context: Context, path: Path, parent: StorageElement? = null): FileStorageElement?
+    suspend fun read(
+        context: Context,
+        path: Path,
+        parent: StorageElement? = null,
+        readMeta: Meta? = null,
+    ): FileStorageElement?
 }
 
 class FileStorage(
@@ -95,12 +103,12 @@ class FileStorage(
         }
     }
 
-    /**
-     * Creating a watch service or reusing one from parent
-     */
-    private val watchService: WatchService by lazy {
-        (parent as? FileStorage)?.watchService ?: path.fileSystem.newWatchService()
-    }
+//    /**
+//     * Creating a watch service or reusing one from parent
+//     */
+//    private val watchService: WatchService by lazy {
+//        (parent as? FileStorage)?.watchService ?: path.fileSystem.newWatchService()
+//    }
 
 //TODO actually watch for file change
 
@@ -117,15 +125,13 @@ class FileStorage(
         fun resolveMeta(
             path: Path,
             metaReader: (Path) -> Meta? = { EnvelopeType.infer(it)?.reader?.read(it)?.meta },
-        ): Meta? {
-            return if (Files.isDirectory(path)) {
+        ): Meta? = if (Files.isDirectory(path)) {
             Files.list(path).asSequence()
                 .find { it.fileName.toString() == "meta.df" || it.fileName.toString() == "meta" }
                 ?.let(metaReader)
         } else {
             metaReader(path)
         }
-        }
 
         fun createMetaEnvelope(meta: Meta): Envelope {
             return EnvelopeBuilder().meta(meta).setEnvelopeType(META_ENVELOPE_TYPE).build()
@@ -167,8 +173,13 @@ class FileStorage(
             }
         }
 
-        override suspend fun read(context: Context, path: Path, parent: StorageElement?): FileStorageElement? {
-            val meta = resolveMeta(path)
+        override suspend fun read(
+            context: Context,
+            path: Path,
+            parent: StorageElement?,
+            readMeta: Meta?,
+        ): FileStorageElement? {
+            val meta = readMeta ?: resolveMeta(path)
             val name = meta?.optString("name").nullable ?: path.fileName.toString()
             val type = meta?.optString("type").nullable?.let {
                 context.load<StorageManager>().getType(it)

dataforge-storage/src/main/kotlin/hep/dataforge/storage/files/FileTableLoader.kt

@@ -299,7 +299,7 @@ class TableLoaderType : FileStorageElementType {
         })
     }
 
-    override suspend fun read(context: Context, path: Path, parent: StorageElement?): FileStorageElement? {
+    override suspend fun read(context: Context, path: Path, parent: StorageElement?, readMeta: Meta?): FileStorageElement {
         val envelope = EnvelopeReader.readFile(path)
 
         val name = envelope.meta.optString("name").nullable ?: path.fileName.toString()

numass-core/numass-data-proto/src/main/kotlin/inr/numass/data/ProtoNumassPoint.kt

@@ -106,13 +106,11 @@ class ProtoNumassPoint(override val meta: Meta, val protoBuilder: () -> NumassPr
             this.data.stream
         }
 
-        fun fromEnvelope(envelope: Envelope): ProtoNumassPoint {
-            return ProtoNumassPoint(envelope.meta) {
+        fun fromEnvelope(envelope: Envelope): ProtoNumassPoint = ProtoNumassPoint(envelope.meta) {
             envelope.dataStream().use {
                 NumassProto.Point.parseFrom(it)
             }
         }
-        }
 
 //        fun readFile(path: String, context: Context = Global): ProtoNumassPoint {
 //            return readFile(context.getFile(path).absolutePath)

numass-core/src/main/kotlin/inr/numass/data/NumassDataUtils.kt

@@ -82,7 +82,7 @@ object NumassDataUtils {
     }
 
     fun read(envelope: Envelope): NumassPoint =
-        if (envelope.meta.hasMeta("dpp_params") || envelope.meta.hasMeta("tqdc")) {
+        if (envelope.meta.hasMeta("dpp_params") || envelope.meta.hasMeta("channels") || envelope.meta.hasMeta("tqdc")) {
             ProtoNumassPoint.fromEnvelope(envelope)
         } else {
             ClassicNumassPoint(envelope)

numass-core/src/main/kotlin/inr/numass/data/storage/NumassDataLoader.kt

@@ -56,9 +56,9 @@ class NumassDataLoader(
     override fun getConnectionHelper(): ConnectionHelper = _connectionHelper
 
 
-    override val meta: Meta by lazy {
+    override val meta: Meta get() {
         val metaPath = path.resolve("meta")
-        NumassEnvelopeType.infer(metaPath)?.reader?.read(metaPath)?.meta ?: Meta.empty()
+        return NumassEnvelopeType.infer(metaPath)?.reader?.read(metaPath)?.meta ?: Meta.empty()
     }
 
     override suspend fun getHvData(): Table? {
@@ -73,7 +73,6 @@ class NumassDataLoader(
         }
     }
 
-
     private val pointEnvelopes: List<Envelope> by lazy {
         Files.list(path)
             .filter { it.fileName.toString().startsWith(POINT_FRAGMENT_NAME) }

numass-core/src/main/kotlin/inr/numass/data/storage/NumassDirectory.kt

@@ -15,31 +15,74 @@
  */
 package inr.numass.data.storage
 
+import hep.dataforge.connections.ConnectionHelper
 import hep.dataforge.context.Context
 import hep.dataforge.context.Global
 import hep.dataforge.events.Event
 import hep.dataforge.events.EventBuilder
+import hep.dataforge.io.envelopes.Envelope
 import hep.dataforge.meta.Meta
+import hep.dataforge.nullable
 import hep.dataforge.storage.StorageElement
+import hep.dataforge.storage.StorageManager
 import hep.dataforge.storage.files.FileStorage
 import hep.dataforge.storage.files.FileStorageElement
+import hep.dataforge.storage.files.FileStorageElementType
 import inr.numass.data.NumassEnvelopeType
 import kotlinx.coroutines.runBlocking
 import java.nio.file.Files
 import java.nio.file.Path
 
+class EnvelopeStorageElement(
+    override val context: Context,
+    override val name: String,
+    override val meta: Meta,
+    override val path: Path,
+    override val parent: StorageElement?,
+) : FileStorageElement {
+    private val _connectionHelper by lazy { ConnectionHelper(this) }
+
+    override fun getConnectionHelper(): ConnectionHelper = _connectionHelper
+
+    val envelope: Envelope? get() = NumassEnvelopeType.infer(path)?.reader?.read(path)
+}
+
+
 /**
  * Numass storage directory. Works as a normal directory, but creates a numass loader from each directory with meta
  */
 class NumassDirectory : FileStorage.Directory() {
     override val name: String = NUMASS_DIRECTORY_TYPE
 
-    override suspend fun read(context: Context, path: Path, parent: StorageElement?): FileStorageElement? {
-        val meta = FileStorage.resolveMeta(path){ NumassEnvelopeType.infer(it)?.reader?.read(it)?.meta }
+    override suspend fun read(
+        context: Context,
+        path: Path,
+        parent: StorageElement?,
+        readMeta: Meta?,
+    ): FileStorageElement? {
+        val meta = readMeta ?: FileStorage.resolveMeta(path) { NumassEnvelopeType.infer(it)?.reader?.read(it)?.meta }
         return if (Files.isDirectory(path) && meta != null) {
             NumassDataLoader(context, parent, path.fileName.toString(), path)
         } else {
-            super.read(context, path, parent)
+            val name = meta?.optString("name").nullable ?: path.fileName.toString()
+            val type = meta?.optString("type").nullable?.let {
+                context.load<StorageManager>().getType(it)
+            } as? FileStorageElementType
+            if (type == null || type is FileStorage.Directory) {
+                // Read path as directory if type not found and path is directory
+                if (Files.isDirectory(path)) {
+                    FileStorage(context, name, meta ?: Meta.empty(), path, parent, this)
+                } else {
+                    EnvelopeStorageElement(context, name, meta ?: Meta.empty(), path, parent)
+                }
+            } else {
+                //Otherwise, delegate to the type
+                type.read(context, path, parent)
+            }.also {
+                if (it != null && parent == null) {
+                    context.load<StorageManager>().register(it)
+                }
+            }
         }
     }
 

numass-main/src/main/kotlin/inr/numass/scripts/analysis/test_data.kt

@@ -10,7 +10,8 @@ fun main() {
     Global.output = FXOutputManager()
     JFreeChartPlugin().startGlobal()
 
-    val file = File("C:\\Users\\darksnake\\Desktop\\test-data\\p20211012142003(20s)").toPath()
+    val file = File("D:\\Work\\Numass\\data\\test\\7.df").toPath()
+    println(file)
     val point = ProtoNumassPoint.readFile(file)
 
     point.events.forEach {

numass-viewer/build.gradle.kts

@@ -19,7 +19,7 @@ application {
     mainClass.set("inr.numass.viewer.Viewer")
 }
 
-version = "0.6.0"
+version = "0.6.3"
 
 description = "The viewer for numass data"
 
@@ -30,6 +30,7 @@ dependencies {
 }
 
 val addJvmArgs = listOf(
+    "-XX:+UseZGC",
     "--add-exports=javafx.graphics/com.sun.glass.ui=ALL-UNNAMED",
     "--add-opens=javafx.graphics/com.sun.javafx.css=ALL-UNNAMED",
     "--add-opens=javafx.graphics/com.sun.javafx.scene=ALL-UNNAMED",
@@ -39,6 +40,10 @@ val addJvmArgs = listOf(
     "--add-opens=javafx.controls/com.sun.javafx.scene.control.behavior=ALL-UNNAMED",
     "--add-opens=javafx.controls/javafx.scene.control.skin=ALL-UNNAMED",
     "--add-exports=javafx.controls/com.sun.javafx.scene.control.inputmap=ALL-UNNAMED",
+    "--add-exports=javafx.controls/com.sun.javafx.scene.control.behavior=ALL-UNNAMED",
+    "--add-exports=javafx.base/com.sun.javafx.event=ALL-UNNAMED",
+    "--add-opens=javafx.controls/javafx.scene.control.skin=ALL-UNNAMED",
+    "--add-opens=javafx.graphics/javafx.scene=ALL-UNNAMED"
 )
 
 application {
@@ -57,8 +62,28 @@ runtime {
         "javafx.controls"
     )
     jpackage {
+        //installerType = "deb"
         jvmArgs = addJvmArgs
-        //imageOptions = listOf("--linux-deb-maintainer", "nozik.aa@mipt.ru", "--linux-menu-group", "Science")
+        val currentOs = org.gradle.internal.os.OperatingSystem.current()
+        installerOptions = installerOptions + listOf("--vendor", "MIPT-NPM lab")
+
+        if (currentOs.isWindows) {
+            installerOptions = installerOptions + listOf(
+                "--win-menu",
+                "--win-menu-group", "Numass",
+                "--win-dir-chooser",
+                "--win-shortcut"
+            )
+        } else if (currentOs.isLinux) {
+            installerType = "deb"
+            installerOptions = installerOptions + listOf(
+                "--linux-package-name", "numass-viewer",
+                "--linux-shortcut",
+                "--linux-deb-maintainer", "nozik.aa@mipt.ru",
+                "--linux-menu-group", "Science",
+                "--linux-shortcut"
+            )
+        }
     }
     launcher {
         jvmArgs = addJvmArgs

numass-viewer/src/main/kotlin/inr/numass/viewer/AmplitudeView.kt

@@ -2,35 +2,31 @@ package inr.numass.viewer
 
 import hep.dataforge.configure
 import hep.dataforge.fx.dfIcon
-import hep.dataforge.fx.except
 import hep.dataforge.fx.plots.PlotContainer
-import hep.dataforge.fx.runGoal
-import hep.dataforge.fx.ui
-import hep.dataforge.goals.Goal
 import hep.dataforge.names.Name
 import hep.dataforge.plots.PlotGroup
-import hep.dataforge.plots.Plottable
 import hep.dataforge.plots.data.DataPlot
 import hep.dataforge.plots.jfreechart.JFreeChartFrame
 import hep.dataforge.tables.Adapters
 import inr.numass.data.analyzers.NumassAnalyzer
 import inr.numass.data.analyzers.withBinning
-import inr.numass.data.api.NumassPoint
-import javafx.beans.Observable
 import javafx.beans.binding.DoubleBinding
 import javafx.beans.property.SimpleBooleanProperty
+import javafx.beans.property.SimpleIntegerProperty
 import javafx.beans.property.SimpleObjectProperty
 import javafx.collections.FXCollections
+import javafx.collections.MapChangeListener
 import javafx.collections.ObservableMap
 import javafx.scene.control.CheckBox
 import javafx.scene.control.ChoiceBox
 import javafx.scene.image.ImageView
-import kotlinx.coroutines.Dispatchers
+import kotlinx.coroutines.*
+import kotlinx.coroutines.javafx.JavaFx
 import tornadofx.*
 
 class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = ImageView(dfIcon)) {
-
-    private val pointCache by inject<PointCache>()
+    private val dataController by inject<DataController>()
+    private val data get() = dataController.points
 
     private val frame = JFreeChartFrame().configure {
         "title" to "Detector response plot"
@@ -54,17 +50,17 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
         }.setType<DataPlot>()
     }
 
-    val binningProperty = SimpleObjectProperty(20)
-    var binning by binningProperty
+    val binningProperty = SimpleIntegerProperty(2)
+    var binning: Int by binningProperty
 
     val normalizeProperty = SimpleBooleanProperty(true)
     var normalize by normalizeProperty
 
 
-    private val container = PlotContainer(frame).apply {
-        val binningSelector: ChoiceBox<Int> = ChoiceBox(FXCollections.observableArrayList(1, 2, 8, 16, 32, 50)).apply {
+    private val plotContainer = PlotContainer(frame).apply {
+        val binningSelector: ChoiceBox<Int> = ChoiceBox(FXCollections.observableArrayList(1, 2, 8, 16, 32)).apply {
             minWidth = 0.0
-            selectionModel.selectLast()
+            selectionModel.select(binning as Int?)
             binningProperty.bind(this.selectionModel.selectedItemProperty())
         }
         val normalizeSwitch: CheckBox = CheckBox("Normalize").apply {
@@ -74,61 +70,48 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
         addToSideBar(0, binningSelector, normalizeSwitch)
     }
 
-    private val data: ObservableMap<String, NumassPoint> = FXCollections.observableHashMap()
-    private val plots: ObservableMap<String, Goal<Plottable>> = FXCollections.observableHashMap()
+    private val plotJobs: ObservableMap<String, Job> = FXCollections.observableHashMap()
 
-    val isEmpty = booleanBinding(data) { isEmpty() }
 
     private val progress = object : DoubleBinding() {
         init {
-            bind(plots)
-        }
-
-        override fun computeValue(): Double {
-            return plots.values.count { it.isDone }.toDouble() / data.size;
+            bind(plotJobs)
         }
 
+        override fun computeValue(): Double = plotJobs.values.count { it.isCompleted }.toDouble() / plotJobs.size
     }
 
     init {
-        data.addListener { _: Observable ->
-            invalidate()
+        data.addListener(MapChangeListener { change ->
+            val key = change.key.toString()
+            if (change.wasAdded()) {
+                replotOne(key, change.valueAdded)
+            } else if (change.wasRemoved()) {
+                plotJobs[key]?.cancel()
+                plotJobs.remove(key)
+                frame.plots.remove(Name.ofSingle(key))
+                progress.invalidate()
             }
+        })
 
         binningProperty.onChange {
-            frame.plots.clear()
-            plots.clear()
-            invalidate()
+            replot()
         }
 
         normalizeProperty.onChange {
-            frame.plots.clear()
-            plots.clear()
-            invalidate()
+            replot()
         }
 
-        container.progressProperty.bind(progress)
+        plotContainer.progressProperty.bind(progress)
     }
 
-    override val root = borderpane {
-        center = container.root
+    private fun replotOne(key: String, point: DataController.CachedPoint) {
+        plotJobs[key]?.cancel()
+        frame.plots.remove(Name.ofSingle(key))
+        plotJobs[key] = app.context.launch {
+            withContext(Dispatchers.JavaFx) {
+                progress.invalidate()
             }
-
-    /**
-     * Put or replace current plot with name `key`
-     */
-    operator fun set(key: String, point: NumassPoint) {
-        data[key] = point
-    }
-
-    fun addAll(data: Map<String, NumassPoint>) {
-        this.data.putAll(data);
-    }
-
-    private fun invalidate() {
-        data.forEach { (key, point) ->
-            plots.getOrPut(key) {
-                runGoal<Plottable>(app.context, "loadAmplitudeSpectrum_$key", Dispatchers.IO) {
             val valueAxis = if (normalize) {
                 NumassAnalyzer.COUNT_RATE_KEY
             } else {
@@ -136,9 +119,9 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
             }
             val adapter = Adapters.buildXYAdapter(NumassAnalyzer.CHANNEL_KEY, valueAxis)
 
-                    val channels = pointCache.getChannelSpectra(key, point)
+            val channels = point.channelSpectra.await()
 
-                    return@runGoal if (channels.size == 1) {
+            val plot = if (channels.size == 1) {
                 DataPlot.plot(
                     key,
                     channels.values.first().withBinning(binning),
@@ -146,7 +129,7 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
                 )
             } else {
                 val group = PlotGroup.typed<DataPlot>(key)
-                        channels.forEach { key, spectrum ->
+                channels.forEach { (key, spectrum) ->
                     val plot = DataPlot.plot(
                         key.toString(),
                         spectrum.withBinning(binning),
@@ -156,47 +139,29 @@ class AmplitudeView : View(title = "Numass amplitude spectrum plot", icon = Imag
                 }
                 group
             }
-                } ui { plot ->
+            withContext(Dispatchers.JavaFx) {
                 frame.add(plot)
-                    progress.invalidate()
-                } except {
+            }
+        }.apply {
+            invokeOnCompletion {
+                runLater{
                     progress.invalidate()
                 }
             }
-            plots.keys.filter { !data.containsKey(it) }.forEach { remove(it) }
         }
     }
 
-    fun clear() {
-        data.clear()
-        plots.values.forEach{
-            it.cancel()
+    private fun replot() {
+        frame.plots.clear()
+        plotJobs.forEach { (_, job) -> job.cancel() }
+        plotJobs.clear()
+
+        data.forEach { (key, point) ->
+            replotOne(key.toString(), point)
         }
-        plots.clear()
-        invalidate()
     }
 
-    /**
-     * Remove the plot and cancel loading task if it is in progress.
-     */
-    fun remove(name: String) {
-        frame.plots.remove(Name.ofSingle(name))
-        plots[name]?.cancel()
-        plots.remove(name)
-        data.remove(name)
-        progress.invalidate()
+    override val root = borderpane {
+        center = plotContainer.root
     }
-
-    /**
-     * Set frame content to the given map. All keys not in the map are removed.
-     */
-    fun setAll(map: Map<String, NumassPoint>) {
-        plots.clear();
-        //Remove obsolete keys
-        data.keys.filter { !map.containsKey(it) }.forEach {
-            remove(it)
-        }
-        this.addAll(map);
-    }
-
 }

numass-viewer/src/main/kotlin/inr/numass/viewer/DataController.kt

@@ -0,0 +1,176 @@
+package inr.numass.viewer
+
+import hep.dataforge.context.ContextAware
+import hep.dataforge.meta.Meta
+import hep.dataforge.names.Name
+import hep.dataforge.storage.tables.TableLoader
+import hep.dataforge.tables.Adapters
+import hep.dataforge.tables.ListTable
+import hep.dataforge.tables.Table
+import hep.dataforge.tables.TableFormatBuilder
+import hep.dataforge.utils.Misc
+import hep.dataforge.values.ValueMap
+import inr.numass.data.analyzers.NumassAnalyzer
+import inr.numass.data.analyzers.TimeAnalyzer
+import inr.numass.data.api.NumassPoint
+import inr.numass.data.api.NumassSet
+import inr.numass.data.storage.NumassDataLoader
+import javafx.beans.property.SimpleObjectProperty
+import javafx.collections.FXCollections
+import javafx.collections.ObservableList
+import javafx.collections.ObservableMap
+import kotlinx.coroutines.*
+import tornadofx.*
+import java.nio.file.*
+import java.nio.file.attribute.BasicFileAttributes
+import kotlin.math.floor
+
+
+class DataController : Controller(), ContextAware {
+    override val context get() = app.context
+
+    val analyzer = TimeAnalyzer()
+
+    inner class CachedPoint(point: NumassPoint) {
+        val length = point.length
+
+        val voltage = point.voltage
+
+        val index = point.index
+
+        val meta = point.meta
+
+        val channelSpectra: Deferred<Map<Int, Table>> = context.async(start = CoroutineStart.LAZY) {
+            point.channels.mapValues { (_, value) -> analyzer.getAmplitudeSpectrum(value) }
+        }
+
+        val spectrum: Deferred<Table> = context.async(start = CoroutineStart.LAZY){
+            analyzer.getAmplitudeSpectrum(point)
+        }
+
+        val timeSpectrum: Deferred<Table> = context.async(start = CoroutineStart.LAZY) {
+            val cr = spectrum.await().sumOf {
+                it.getValue(NumassAnalyzer.COUNT_KEY).int
+            }.toDouble() / point.length.toMillis() * 1000
+
+            val binNum = 200
+            //inputMeta.getInt("binNum", 1000);
+            val binSize = 1.0 / cr * 10 / binNum * 1e6
+            //inputMeta.getDouble("binSize", 1.0 / cr * 10 / binNum * 1e6)
+
+            val format = TableFormatBuilder()
+                .addNumber("x", Adapters.X_VALUE_KEY)
+                .addNumber(NumassAnalyzer.COUNT_KEY, Adapters.Y_VALUE_KEY)
+                .build()
+
+            ListTable.Builder(format).rows(
+                analyzer.getEventsWithDelay(point, Meta.empty())
+                    .map { it.second.toDouble() / 1000.0 }
+                    .groupBy { floor(it / binSize) }
+                    .toSortedMap()
+                    .map {
+                        ValueMap.ofPairs("x" to it.key, "count" to it.value.count())
+                    }
+            ).build()
+        }
+    }
+
+    private val cache = Misc.getLRUCache<Name, CachedPoint>(400)
+
+    fun getCachedPoint(id: Name, point: NumassPoint): CachedPoint = cache.getOrPut(id) { CachedPoint(point) }
+
+    fun getSpectrumAsync(id: Name, point: NumassPoint): Deferred<Table> =
+        getCachedPoint(id, point).spectrum
+
+    suspend fun getChannelSpectra(id: Name, point: NumassPoint): Map<Int, Table> =
+        getCachedPoint(id, point).channelSpectra.await()
+
+    val sets: ObservableMap<Name, NumassSet> = FXCollections.observableHashMap()
+    val points: ObservableMap<Name, CachedPoint> = FXCollections.observableHashMap()
+    val sc: ObservableMap<Name, TableLoader> = FXCollections.observableHashMap()
+
+    val files: ObservableList<Path> = FXCollections.observableArrayList()
+
+    val watchPathProperty = SimpleObjectProperty<Path?>()
+
+    private var watchJob: Job? = null
+
+    init {
+        watchPathProperty.onChange { watchPath ->
+            watchJob?.cancel()
+            if (watchPath != null) {
+                Files.list(watchPath).toList()
+                    .filter {
+                        !Files.isDirectory(it) && it.fileName.toString()
+                            .startsWith(NumassDataLoader.POINT_FRAGMENT_NAME)
+                    }
+                    .sortedBy { file ->
+                        val attr = Files.readAttributes(file, BasicFileAttributes::class.java)
+                        attr.creationTime()
+                    }.forEach { path ->
+                        try {
+                            runLater {
+                                files.add(path)
+                            }
+                        } catch (x: Throwable) {
+                            app.context.logger.error("Error during dynamic point read", x)
+                        }
+                    }
+                val watcher = watchPath.fileSystem.newWatchService()
+                watchJob = app.context.launch(Dispatchers.IO) {
+                    watcher.use { watcher ->
+                        watchPath.register(watcher, StandardWatchEventKinds.ENTRY_CREATE)
+                        while (isActive) {
+                            val key: WatchKey = watcher.take()
+                            for (event: WatchEvent<*> in key.pollEvents()) {
+                                if (event.kind() == StandardWatchEventKinds.ENTRY_CREATE) {
+                                    val path: Path = event.context() as Path
+                                    runLater {
+                                        files.add(watchPath.resolve(path))
+                                    }
+                                }
+                            }
+                            key.reset()
+                        }
+                    }
+                }
+            }
+        }
+    }
+
+    fun clear() {
+        cache.clear()
+        sets.clear()
+        points.clear()
+        sc.clear()
+        watchPathProperty.set(null)
+    }
+
+
+    fun addPoint(id: Name, point: NumassPoint): CachedPoint {
+        val newPoint = getCachedPoint(id, point)
+        points[id] = newPoint
+        return newPoint
+    }
+
+    fun addSet(id: Name, set: NumassSet) {
+        sets[id] = set
+    }
+
+    fun addSc(id: Name, set: TableLoader) {
+        sc[id] = set
+    }
+
+    fun remove(id: Name) {
+        points.remove(id)
+        sets.remove(id)
+        sc.remove(id)
+    }
+
+//
+//    fun addAllPoints(points: Map<String, NumassPoint>) {
+//        TODO()
+//    }
+
+
+}

numass-viewer/src/main/kotlin/inr/numass/viewer/DirectoryWatchView.kt

@@ -0,0 +1,93 @@
+package inr.numass.viewer
+
+import hep.dataforge.asName
+import hep.dataforge.fx.dfIconView
+import hep.dataforge.io.envelopes.Envelope
+import hep.dataforge.names.AlphanumComparator
+import hep.dataforge.names.Name
+import inr.numass.data.NumassDataUtils
+import inr.numass.data.NumassEnvelopeType
+import inr.numass.data.api.NumassPoint
+import inr.numass.data.storage.NumassDataLoader
+import kotlinx.coroutines.launch
+import tornadofx.*
+import java.nio.file.Path
+
+class DirectoryWatchView : View(title = "Numass storage", icon = dfIconView) {
+
+    private val dataController by inject<DataController>()
+
+    private val ampView: AmplitudeView by inject()
+    private val timeView: TimeView by inject()
+
+//    private val files: ObservableList<DataController.CachedPoint> =
+//        FXCollections.observableArrayList<DataController.CachedPoint>().apply {
+//            bind(dataController.points) { _, v -> v }
+//        }
+
+    private fun readPointFile(path: Path): NumassPoint {
+        val envelope: Envelope = NumassEnvelopeType.infer(path)?.reader?.read(path)
+            ?: kotlin.error("Can't read point file")
+        return NumassDataUtils.read(envelope)
+    }
+
+    //private class PointContainer(val path: Path, val checkedProperty: BooleanProperty = SimpleBooleanProperty())
+
+    override val root = splitpane {
+        listview(dataController.files.sorted { l, r -> AlphanumComparator.compare(l.toString(), r.toString()) }) {
+            cellFormat { path: Path ->
+                if (path.fileName.toString().startsWith(NumassDataLoader.POINT_FRAGMENT_NAME)) {
+                    val name = Name.of(path.map { it.toString().asName() })
+                    text = null
+                    graphic = checkbox(path.fileName.toString()).apply {
+                        isSelected = dataController.points.containsKey(name)
+                        selectedProperty().onChange {
+                            if (it) {
+                                app.context.launch {
+                                    dataController.addPoint(name, readPointFile(path))
+                                }
+                            } else {
+                                dataController.remove(name)
+                            }
+                        }
+                    }
+
+//                    app.context.launch {
+//                        val point = readPointFile(path)
+//                        val cachedPoint = dataController.addPoint(path.toString().asName(), point)
+//
+//                        //val point = dataController.getCachedPoint(value.toString())
+//                        withContext(Dispatchers.JavaFx) {
+//                            contextMenu = ContextMenu().apply {
+//                                item("Info") {
+//                                    action {
+//                                        PointInfoView(cachedPoint).openModal(escapeClosesWindow = true)
+//                                    }
+//                                }
+//                            }
+//                        }
+//                    }
+
+                } else {
+                    text = path.fileName.toString()
+                    graphic = null
+                    contextMenu = null
+                }
+            }
+        }
+
+        tabpane {
+            tab("Amplitude spectra") {
+                content = ampView.root
+                isClosable = false
+                //visibleWhen(ampView.isEmpty.not())
+            }
+            tab("Time spectra") {
+                content = timeView.root
+                isClosable = false
+                //visibleWhen(ampView.isEmpty.not())
+            }
+        }
+        setDividerPosition(0, 0.3);
+    }
+}

numass-viewer/src/main/kotlin/inr/numass/viewer/HVView.kt

@@ -11,11 +11,8 @@ import hep.dataforge.plots.data.TimePlot
 import hep.dataforge.plots.jfreechart.JFreeChartFrame
 import hep.dataforge.tables.Adapters
 import inr.numass.data.api.NumassSet
-import javafx.collections.FXCollections
 import javafx.collections.MapChangeListener
-import javafx.collections.ObservableMap
 import javafx.scene.image.ImageView
-import kotlinx.coroutines.Dispatchers
 import tornadofx.*
 
 
@@ -24,6 +21,9 @@ import tornadofx.*
  */
 class HVView : View(title = "High voltage time plot", icon = ImageView(dfIcon)) {
 
+    private val dataController by inject<DataController>()
+    private val data get() = dataController.sets
+
     private val frame = JFreeChartFrame().configure {
         "xAxis.title" to "time"
         "xAxis.type" to "time"
@@ -44,23 +44,22 @@ class HVView : View(title = "High voltage time plot", icon = ImageView(dfIcon))
         center = PlotContainer(frame).root
     }
 
-    private val data: ObservableMap<String, NumassSet> = FXCollections.observableHashMap()
     val isEmpty = booleanBinding(data) { data.isEmpty() }
 
     init {
-        data.addListener { change: MapChangeListener.Change<out String, out NumassSet> ->
+        data.addListener { change: MapChangeListener.Change<out Name, out NumassSet> ->
             isEmpty.invalidate()
             if (change.wasRemoved()) {
-                frame.plots.remove(Name.ofSingle(change.key))
+                frame.plots.remove(change.key)
             }
             if (change.wasAdded()) {
                 runLater { container.progress = -1.0 }
-                runGoal(app.context,"hvData[${change.key}]", Dispatchers.IO) {
+                runGoal(app.context,"hvData[${change.key}]") {
                     change.valueAdded.getHvData()
                 } ui { table ->
                     if (table != null) {
-                        ((frame[change.key] as? DataPlot)
-                                ?: DataPlot(change.key, adapter = Adapters.buildXYAdapter("timestamp", "value")).also { frame.add(it) })
+                        ((frame[change.key.toString()] as? DataPlot)
+                                ?: DataPlot(change.key.toString(), adapter = Adapters.buildXYAdapter("timestamp", "value")).also { frame.add(it) })
                                 .fillData(table)
                     }
 
@@ -71,18 +70,4 @@ class HVView : View(title = "High voltage time plot", icon = ImageView(dfIcon))
         }
     }
 
-
-    operator fun set(id: String, set: NumassSet) {
-        data[id] = set
-    }
-
-    fun remove(id: String) {
-        data.remove(id);
-    }
-
-    fun clear() {
-        data.clear()
-    }
-
-
 }

numass-viewer/src/main/kotlin/inr/numass/viewer/MainView.kt

@@ -1,5 +1,6 @@
 package inr.numass.viewer
 
+import hep.dataforge.asName
 import hep.dataforge.fx.dfIconView
 import hep.dataforge.fx.except
 import hep.dataforge.fx.runGoal
@@ -29,7 +30,7 @@ import java.nio.file.Path
 
 class MainView : View(title = "Numass viewer", icon = dfIconView) {
 
-    private val pointCache by inject<PointCache>()
+    private val dataController by inject<DataController>()
 
     val storageView by inject<StorageView>()
 
@@ -38,16 +39,123 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
 //        addLogHandler(context.logger)
 //    }
 
-    private val pathProperty = SimpleObjectProperty<Path>()
-    private var path: Path by pathProperty
+    private val pathProperty = SimpleObjectProperty<Path?>()
 
     private val contentViewProperty = SimpleObjectProperty<UIComponent>()
-    var contentView: UIComponent? by contentViewProperty
+    private var contentView: UIComponent? by contentViewProperty
+    private val spectrumView by inject<SpectrumView>()
+    private val amplitudeView by inject<AmplitudeView>()
+    private val directoryWatchView by inject<DirectoryWatchView>()
+
+    init {
+        contentViewProperty.onChange {
+            root.center = it?.root
+        }
+    }
+
+    private fun loadDirectory(path: Path){
+        app.context.launch {
+            dataController.clear()
+            runLater {
+                pathProperty.set(path)
+                contentView = null
+            }
+            if (Files.exists(path.resolve(NumassDataLoader.META_FRAGMENT_NAME))) {
+                //build set view
+                runGoal(app.context, "viewer.load.set[$path]") {
+                    title = "Load set ($path)"
+                    message = "Building numass set..."
+                    NumassDataLoader(app.context, null, path.fileName.toString(), path)
+                } ui { loader: NumassDataLoader ->
+                    contentView = spectrumView
+                    dataController.addSet(loader.name.asName(), loader)
+
+                } except {
+                    alert(
+                        type = Alert.AlertType.ERROR,
+                        header = "Error during set loading",
+                        content = it.toString()
+                    ).show()
+                }
+            } else {
+                //build storage
+                app.context.launch {
+                    val storageElement =
+                        NumassDirectory.INSTANCE.read(app.context, path) as? Storage
+                    withContext(Dispatchers.JavaFx) {
+                        contentView = storageView
+                        storageView.storageProperty.set(storageElement)
+                    }
+                }
+            }
+        }
+    }
+
+    private fun loadFile(path: Path){
+        app.context.launch {
+            dataController.clear()
+            runLater {
+                pathProperty.set(path)
+                contentView = null
+            }
+            //Reading individual file
+            val envelope = try {
+                NumassFileEnvelope(path)
+            } catch (ex: Exception) {
+                runLater {
+                    alert(
+                        type = Alert.AlertType.ERROR,
+                        header = "Can't load DF envelope from file $path",
+                        content = ex.toString()
+                    ).show()
+                }
+                null
+            }
+
+            envelope?.let {
+                //try to read as point
+                val point = NumassDataUtils.read(it)
+                runLater {
+                    contentView = amplitudeView
+                    dataController.addPoint(path.fileName.toString().asName(), point)
+                }
+            }
+        }
+    }
+
+    private fun watchDirectory(path: Path){
+        app.context.launch {
+            dataController.clear()
+            runLater {
+                pathProperty.set(path)
+                contentView = directoryWatchView
+                dataController.watchPathProperty.set(path)
+            }
+        }
+    }
+
 
     override val root = borderpane {
         prefHeight = 600.0
         prefWidth = 800.0
         top {
+            //bypass top configuration bar and only watch directory
+            app.parameters.named["directory"]?.let{ pathString ->
+                val path = Path.of(pathString).toAbsolutePath()
+                watchDirectory(path)
+                toolbar{
+                    prefHeight = 40.0
+                    label("Watching $path") {
+                        padding = Insets(0.0, 0.0, 0.0, 10.0)
+                        font = Font.font("System Bold", 13.0)
+                    }
+                    pane {
+                        hgrow = Priority.ALWAYS
+                    }
+                }
+                return@top
+            }
+
             toolbar {
                 prefHeight = 40.0
                 button("Load directory") {
@@ -71,12 +179,7 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
 
                             if (rootDir != null) {
                                 NumassProperties.setNumassProperty("numass.viewer.lastPath", rootDir.absolutePath)
-                                app.context.launch {
-                                    runLater {
-                                        path = rootDir.toPath()
-                                    }
-                                    load(rootDir.toPath())
-                                }
+                                loadDirectory(rootDir.toPath())
                             }
                         } catch (ex: Exception) {
                             NumassProperties.setNumassProperty("numass.viewer.lastPath", null)
@@ -101,13 +204,38 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
                             if (file != null) {
                                 NumassProperties.setNumassProperty("numass.viewer.lastPath",
                                     file.parentFile.absolutePath)
-                                app.context.launch {
-                                    runLater {
-                                        path = file.toPath()
+                                loadFile(file.toPath())
                             }
-                                    load(file.toPath())
+                        } catch (ex: Exception) {
+                            NumassProperties.setNumassProperty("numass.viewer.lastPath", null)
+                            error("Error", content = "Failed to laod file with message: ${ex.message}")
                         }
                     }
+                }
+
+                button("Watch directory") {
+                    action {
+                        val chooser = DirectoryChooser()
+                        chooser.title = "Select directory to watch"
+                        val homeDir = NumassProperties.getNumassProperty("numass.viewer.lastPath")
+                        try {
+                            if (homeDir == null) {
+                                chooser.initialDirectory = File(".").absoluteFile
+                            } else {
+                                val file = File(homeDir)
+                                if (file.isDirectory) {
+                                    chooser.initialDirectory = file
+                                } else {
+                                    chooser.initialDirectory = file.parentFile
+                                }
+                            }
+
+                            val dir = chooser.showDialog(primaryStage.scene.window)
+
+                            if (dir != null) {
+                                NumassProperties.setNumassProperty("numass.viewer.lastPath", dir.absolutePath)
+                                watchDirectory(dir.toPath())
+                            }
                         } catch (ex: Exception) {
                             NumassProperties.setNumassProperty("numass.viewer.lastPath", null)
                             error("Error", content = "Failed to laod file with message: ${ex.message}")
@@ -131,71 +259,4 @@ class MainView : View(title = "Numass viewer", icon = dfIconView) {
         bottom = statusBar
     }
 
-    init {
-        contentViewProperty.onChange {
-            root.center = it?.root
-        }
-    }
-
-    private suspend fun load(path: Path) {
-        runLater {
-            contentView = null
-        }
-        pointCache.clear()
-        if (Files.isDirectory(path)) {
-            if (Files.exists(path.resolve(NumassDataLoader.META_FRAGMENT_NAME))) {
-                //build set view
-                runGoal(app.context, "viewer.load.set[$path]", Dispatchers.IO) {
-                    title = "Load set ($path)"
-                    message = "Building numass set..."
-                    NumassDataLoader(app.context, null, path.fileName.toString(), path)
-                } ui { loader: NumassDataLoader ->
-                    contentView = SpectrumView().apply {
-                        clear()
-                        set(loader.name, loader)
-                    }
-                } except {
-                    alert(
-                        type = Alert.AlertType.ERROR,
-                        header = "Error during set loading",
-                        content = it.toString()
-                    ).show()
-                }
-            } else {
-                //build storage
-                app.context.launch {
-                    val storageElement = NumassDirectory.INSTANCE.read(app.context, path) as Storage
-                    withContext(Dispatchers.JavaFx) {
-                        contentView = storageView
-                        storageView.storageProperty.set(storageElement)
-                    }
-                }
-            }
-        } else {
-            //Reading individual file
-            val envelope = try {
-                NumassFileEnvelope(path)
-            } catch (ex: Exception) {
-                runLater {
-                    alert(
-                        type = Alert.AlertType.ERROR,
-                        header = "Can't load DF envelope from file $path",
-                        content = ex.toString()
-                    ).show()
-                }
-                null
-            }
-
-            envelope?.let {
-                //try to read as point
-                val point = NumassDataUtils.read(it)
-                runLater {
-                    contentView = AmplitudeView().apply {
-                        set(path.fileName.toString(), point)
-                    }
-                }
-            }
-        }
-    }
-
 }

numass-viewer/src/main/kotlin/inr/numass/viewer/PointCache.kt

@@ -1,64 +0,0 @@
-/*
- * Copyright  2018 Alexander Nozik.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- *  Unless required by applicable law or agreed to in writing, software
- *  distributed under the License is distributed on an "AS IS" BASIS,
- *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- *  See the License for the specific language governing permissions and
- *  limitations under the License.
- */
-
-package inr.numass.viewer
-
-import hep.dataforge.tables.Table
-import hep.dataforge.utils.Misc
-import inr.numass.data.analyzers.SimpleAnalyzer
-import inr.numass.data.api.NumassPoint
-import kotlinx.coroutines.Deferred
-import kotlinx.coroutines.Dispatchers
-import kotlinx.coroutines.async
-import tornadofx.*
-
-
-private val analyzer = SimpleAnalyzer()
-
-
-class PointCache : Controller() {
-    private val context = app.context
-
-    inner class CachedPoint(point: NumassPoint) {
-        val length = point.length
-
-        val voltage = point.voltage
-
-        val meta = point.meta
-
-        val channelSpectra: Deferred<Map<Int, Table>> = context.async(Dispatchers.IO) {
-            point.channels.mapValues { (_, value) -> analyzer.getAmplitudeSpectrum(value) }
-        }
-
-        val spectrum: Deferred<Table> = context.async(Dispatchers.IO) {
-            analyzer.getAmplitudeSpectrum(point)
-        }
-    }
-
-    private val cache = Misc.getLRUCache<String, CachedPoint>(400)
-
-    fun getCachedPoint(id: String,point: NumassPoint): CachedPoint = cache.getOrPut(id) { CachedPoint(point) }
-
-    fun getSpectrumAsync(id: String, point: NumassPoint): Deferred<Table> =
-        getCachedPoint(id, point).spectrum
-
-    suspend fun getChannelSpectra(id: String, point: NumassPoint): Map<Int, Table> =
-        getCachedPoint(id, point).channelSpectra.await()
-
-    fun clear(){
-        cache.clear()
-    }
-}

numass-viewer/src/main/kotlin/inr/numass/viewer/PointInfoView.kt

@@ -9,7 +9,7 @@ import tornadofx.*
 import tornadofx.controlsfx.borders
 import tornadofx.controlsfx.toGlyph
 
-class PointInfoView(val cachedPoint: PointCache.CachedPoint) : MetaViewer(cachedPoint.meta) {
+class PointInfoView(val cachedPoint: DataController.CachedPoint) : MetaViewer(cachedPoint.meta) {
     val countProperty = SimpleIntegerProperty(0)
     var count by countProperty
 

numass-viewer/src/main/kotlin/inr/numass/viewer/SlowControlView.kt

@@ -5,18 +5,15 @@ import hep.dataforge.fx.dfIcon
 import hep.dataforge.fx.plots.PlotContainer
 import hep.dataforge.fx.runGoal
 import hep.dataforge.fx.ui
+import hep.dataforge.names.Name
 import hep.dataforge.plots.PlotGroup
 import hep.dataforge.plots.data.DataPlot
 import hep.dataforge.plots.jfreechart.JFreeChartFrame
 import hep.dataforge.storage.tables.TableLoader
 import hep.dataforge.storage.tables.asTable
 import hep.dataforge.tables.Adapters
-import hep.dataforge.tables.Table
-import javafx.collections.FXCollections
 import javafx.collections.MapChangeListener
-import javafx.collections.ObservableMap
 import javafx.scene.image.ImageView
-import kotlinx.coroutines.Dispatchers
 import tornadofx.*
 
 /**
@@ -24,6 +21,9 @@ import tornadofx.*
  */
 class SlowControlView : View(title = "Numass slow control view", icon = ImageView(dfIcon)) {
 
+    private val dataController by inject<DataController>()
+    private val data get() = dataController.sc
+
     private val plot = JFreeChartFrame().configure {
         "xAxis.type" to "time"
         "yAxis.type" to "log"
@@ -33,22 +33,21 @@ class SlowControlView : View(title = "Numass slow control view", icon = ImageVie
         center = PlotContainer(plot).root
     }
 
-    val data: ObservableMap<String, TableLoader> = FXCollections.observableHashMap();
     val isEmpty = booleanBinding(data) {
         data.isEmpty()
     }
 
     init {
-        data.addListener { change: MapChangeListener.Change<out String, out TableLoader> ->
+        data.addListener { change: MapChangeListener.Change<out Name, out TableLoader> ->
             if (change.wasRemoved()) {
-                plot.remove(change.key)
+                plot.remove(change.key.toString())
             }
             if (change.wasAdded()) {
-                runGoal(app.context,"loadTable[${change.key}]", Dispatchers.IO) {
-                    val plotData = getData(change.valueAdded)
+                runGoal(app.context,"loadTable[${change.key}]") {
+                    val plotData = change.valueAdded.asTable().await()
                     val names = plotData.format.namesAsArray().filter { it != "timestamp" }
 
-                    val group = PlotGroup(change.key)
+                    val group = PlotGroup(change.key.toString())
 
                     names.forEach {
                         val adapter = Adapters.buildXYAdapter("timestamp", it);
@@ -68,21 +67,4 @@ class SlowControlView : View(title = "Numass slow control view", icon = ImageVie
         }
     }
 
-    private suspend fun getData(loader: TableLoader): Table {
-        //TODO add query
-        return loader.asTable().await()
-    }
-
-    operator fun set(id: String, loader: TableLoader) {
-        this.data[id] = loader
-    }
-
-    fun remove(id: String) {
-        this.data.remove(id)
-    }
-
-    fun clear(){
-        data.clear()
-    }
-
 }

numass-viewer/src/main/kotlin/inr/numass/viewer/SpectrumView.kt

@@ -10,17 +10,13 @@ import hep.dataforge.tables.Adapters
 import inr.numass.data.analyzers.countInWindow
 import inr.numass.data.api.NumassSet
 import javafx.beans.property.SimpleIntegerProperty
-import javafx.collections.FXCollections
 import javafx.collections.MapChangeListener
-import javafx.collections.ObservableMap
 import javafx.geometry.Insets
 import javafx.geometry.Orientation
 import javafx.scene.image.ImageView
 import javafx.util.converter.NumberStringConverter
-import kotlinx.coroutines.Dispatchers
+import kotlinx.coroutines.*
 import kotlinx.coroutines.javafx.JavaFx
-import kotlinx.coroutines.launch
-import kotlinx.coroutines.withContext
 import org.controlsfx.control.RangeSlider
 import tornadofx.*
 import java.util.concurrent.atomic.AtomicInteger
@@ -33,7 +29,8 @@ import kotlin.math.sqrt
  */
 class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIcon)) {
 
-    private val pointCache by inject<PointCache>()
+    private val dataController by inject<DataController>()
+    private val data get() = dataController.sets
 
     private val frame = JFreeChartFrame().configure {
         "xAxis.title" to "U"
@@ -44,7 +41,6 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
     }
     private val container = PlotContainer(frame)
 
-
     private val loChannelProperty = SimpleIntegerProperty(500).apply {
         addListener { _ -> updateView() }
     }
@@ -55,9 +51,7 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
     }
     private var upChannel by upChannelProperty
 
-
-    private val data: ObservableMap<String, NumassSet> = FXCollections.observableHashMap()
-    val isEmpty = booleanBinding(data) { data.isEmpty() }
+    private val isEmpty = booleanBinding(data) { data.isEmpty() }
 
     override val root = borderpane {
         top {
@@ -103,9 +97,9 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
     }
 
     init {
-        data.addListener { change: MapChangeListener.Change<out String, out NumassSet> ->
+        data.addListener { change: MapChangeListener.Change<out Name, out NumassSet> ->
             if (change.wasRemoved()) {
-                frame.plots.remove(Name.ofSingle(change.key))
+                frame.plots.remove(Name.ofSingle(change.key.toString()))
             }
 
             if (change.wasAdded()) {
@@ -121,18 +115,19 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
         val totalProgress = data.values.stream().mapToInt { it.points.size }.sum()
 
         data.forEach { (name, set) ->
-            val plot: DataPlot =
-                frame.plots[Name.ofSingle(name)] as DataPlot? ?: DataPlot(name).apply { frame.add(this) }
+            val plot: DataPlot = frame.plots[name] as DataPlot? ?: DataPlot(name.toString()).apply {
+                frame.add(this)
+            }
 
             app.context.launch {
-                val points = set.points.map {
-                    pointCache.getCachedPoint("$name/${it.voltage}[${it.index}]", it)
+                val points = set.points.map { point ->
+                    dataController.getCachedPoint(Name.join("$name","${point.voltage}[${point.index}]"), point).also {
+                        it.spectrum.start()
+                    }
                 }.map { cachedPoint ->
                     val count = cachedPoint.spectrum.await().countInWindow(loChannel.toShort(), upChannel.toShort())
                     val seconds = cachedPoint.length.toMillis() / 1000.0
-                    launch(Dispatchers.JavaFx) {
-                        container.progress = progress.incrementAndGet().toDouble() / totalProgress
-                    }
+
                     Adapters.buildXYDataPoint(
                         cachedPoint.voltage,
                         (count / seconds),
@@ -146,16 +141,4 @@ class SpectrumView : View(title = "Numass spectrum plot", icon = ImageView(dfIco
             }
         }
     }
-
-    operator fun set(key: String, value: NumassSet) {
-        data[key] = value
-    }
-
-    fun remove(key: String) {
-        data.remove(key)
-    }
-
-    fun clear() {
-        data.clear()
-    }
 }

numass-viewer/src/main/kotlin/inr/numass/viewer/StorageView.kt

@@ -1,15 +1,19 @@
 package inr.numass.viewer
 
+import hep.dataforge.asName
 import hep.dataforge.fx.dfIconView
 import hep.dataforge.fx.meta.MetaViewer
 import hep.dataforge.meta.Meta
 import hep.dataforge.meta.Metoid
 import hep.dataforge.names.AlphanumComparator
+import hep.dataforge.names.Name
 import hep.dataforge.storage.Storage
 import hep.dataforge.storage.files.FileTableLoader
 import hep.dataforge.storage.tables.TableLoader
+import inr.numass.data.NumassDataUtils
 import inr.numass.data.api.NumassPoint
 import inr.numass.data.api.NumassSet
+import inr.numass.data.storage.EnvelopeStorageElement
 import inr.numass.data.storage.NumassDataLoader
 import javafx.beans.property.SimpleBooleanProperty
 import javafx.beans.property.SimpleObjectProperty
@@ -25,7 +29,7 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
     val storageProperty = SimpleObjectProperty<Storage>()
     val storage by storageProperty
 
-    private val pointCache by inject<PointCache>()
+    private val dataController by inject<DataController>()
 
     private val ampView: AmplitudeView by inject()
     private val timeView: TimeView by inject()
@@ -33,27 +37,15 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
     private val hvView: HVView by inject()
     private val scView: SlowControlView by inject()
 
-//    private var watcher: WatchService? = null
-
-
-    fun clear() {
-        //watcher?.close()
-        ampView.clear()
-        timeView.clear()
-        spectrumView.clear()
-        hvView.clear()
-        scView.clear()
-    }
-
-    private inner class Container(val id: String, val content: Any) {
+    private inner class Container(val name: Name, val content: Any) {
         val checkedProperty = SimpleBooleanProperty(false)
         var checked by checkedProperty
 
         val infoView: UIComponent by lazy {
             when (content) {
-                is NumassPoint -> PointInfoView(pointCache.getCachedPoint(id, content))
-                is Metoid -> MetaViewer(content.meta, title = "Meta view: $id")
-                else -> MetaViewer(Meta.empty(), title = "Meta view: $id")
+                is NumassPoint -> PointInfoView(dataController.getCachedPoint(name, content))
+                is Metoid -> MetaViewer(content.meta, title = "Meta view: $name")
+                else -> MetaViewer(Meta.empty(), title = "Meta view: $name")
             }
         }
 
@@ -64,27 +56,23 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
                 when (content) {
                     is NumassPoint -> {
                         if (selected) {
-                            ampView[id] = content
-                            timeView[id] = content
+                            dataController.addPoint(name, content)
                         } else {
-                            ampView.remove(id)
-                            timeView.remove(id)
+                            dataController.remove(name)
                         }
                     }
                     is NumassSet -> {
                         if (selected) {
-                            spectrumView[id] = content
-                            hvView[id] = content
+                            dataController.addSet(name, content)
                         } else {
-                            spectrumView.remove(id)
-                            hvView.remove(id)
+                            dataController.remove(name)
                         }
                     }
                     is TableLoader -> {
                         if (selected) {
-                            scView[id] = content
+                            dataController.addSc(name, content)
                         } else {
-                            scView.remove(id)
+                            dataController.remove(name)
                         }
                     }
                 }
@@ -97,9 +85,19 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
 
         val children: ObservableList<Container>? by lazy {
             when (content) {
-                is Storage -> content.getChildren().map {
+                is Storage -> content.getChildren().mapNotNull {
+                    if (it is EnvelopeStorageElement) {
+                        it.envelope?.let { envelope ->
+                            try {
+                                buildContainer(NumassDataUtils.read(envelope), this)
+                            } catch (ex: Exception) {
+                                null
+                            }
+                        }
+                    } else {
                         buildContainer(it, this)
-                }.sortedWith(Comparator.comparing({ it.id }, AlphanumComparator)).asObservable()
+                    }
+                }.sortedWith(Comparator.comparing({ it.name.toString() }, AlphanumComparator)).asObservable()
                 is NumassSet -> content.points
                     .sortedBy { it.index }
                     .map { buildContainer(it, this) }
@@ -112,38 +110,6 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
 
         private var watchJob: Job? = null
 
-//        private fun toggleWatch(watch: Boolean) {
-//            if (watch) {
-//                if (watchJob != null && content is NumassDataLoader) {
-//                    watchJob = app.context.launch(Dispatchers.IO) {
-//                        val key: WatchKey = content.path.register(watcher!!, ENTRY_CREATE)
-//                        coroutineContext[Job]?.invokeOnCompletion {
-//                            key.cancel()
-//                        }
-//                        while (watcher != null && isActive) {
-//                            try {
-//                                key.pollEvents().forEach { event ->
-//                                    if (event.kind() == ENTRY_CREATE) {
-//                                        val path: Path = event.context() as Path
-//                                        if (path.fileName.toString().startsWith(NumassDataLoader.POINT_FRAGMENT_NAME)) {
-//                                            val envelope: Envelope = NumassEnvelopeType.infer(path)?.reader?.read(path)
-//                                                ?: kotlin.error("Can't read point file")
-//                                            val point = NumassDataUtils.read(envelope)
-//                                            children!!.add(buildContainer(point, this@Container))
-//                                        }
-//                                    }
-//                                }
-//                            } catch (x: Throwable) {
-//                                app.context.logger.error("Error during dynamic point read", x)
-//                            }
-//                        }
-//                    }
-//                }
-//            } else {
-//                watchJob?.cancel()
-//                watchJob = null
-//            }
-//        }
     }
 
 
@@ -151,21 +117,16 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
         treeview<Container> {
             //isShowRoot = false
             storageProperty.onChange { storage ->
-                clear()
+                dataController.clear()
                 if (storage == null) return@onChange
-                root = TreeItem(Container(storage.name, storage))
+                root = TreeItem(Container(storage.name.asName(), storage))
                 root.isExpanded = true
                 lazyPopulate(leafCheck = {
                     !it.value.hasChildren
                 }) {
                     it.value.children
                 }
-//                watcher?.close()
-//                watcher = if (storage is FileStorage) {
-//                    storage.path.fileSystem.newWatchService()
-//                } else {
-//                    null
-//                }
+
             }
 
             cellFormat { value: Container ->
@@ -193,7 +154,7 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
                         }
                     }
                     else -> {
-                        text = value.id
+                        text = value.name.toString()
                         graphic = null
                     }
                 }
@@ -208,11 +169,6 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
                             value.infoView.openModal(escapeClosesWindow = true)
                         }
                     }
-//                    if(value.content is NumassDataLoader) {
-//                        checkmenuitem("Watch") {
-//                            selectedProperty().bindBidirectional(value.watchedProperty)
-//                        }
-//                    }
                 }
             }
         }
@@ -256,19 +212,19 @@ class StorageView : View(title = "Numass storage", icon = dfIconView) {
 
     private fun buildContainer(content: Any, parent: Container): Container =
         when (content) {
-            is Storage -> Container(content.fullName.toString(), content)
+            is Storage -> Container(content.fullName, content)
             is NumassSet -> {
-                val id: String = if (content is NumassDataLoader) {
-                    content.fullName.unescaped
+                val id: Name = if (content is NumassDataLoader) {
+                    content.fullName
                 } else {
-                    content.name
+                    content.name.asName()
                 }
                 Container(id, content)
             }
             is NumassPoint -> {
-                Container("${parent.id}/${content.voltage}[${content.index}]", content)
+                Container("${parent.name}/${content.voltage}[${content.index}]".asName(), content)
             }
-            is FileTableLoader -> Container(content.path.toString(), content)
+            is FileTableLoader -> Container(Name.of(content.path.map { it.toString().asName() }), content)
             else -> throw IllegalArgumentException("Unknown content type: ${content::class.java}");
         }
 }

numass-viewer/src/main/kotlin/inr/numass/viewer/TimeView.kt

@@ -2,30 +2,28 @@ package inr.numass.viewer
 
 import hep.dataforge.configure
 import hep.dataforge.fx.dfIcon
-import hep.dataforge.fx.except
 import hep.dataforge.fx.plots.PlotContainer
-import hep.dataforge.fx.runGoal
-import hep.dataforge.fx.ui
-import hep.dataforge.goals.Goal
-import hep.dataforge.meta.Meta
 import hep.dataforge.names.Name
-import hep.dataforge.plots.Plottable
 import hep.dataforge.plots.data.DataPlot
 import hep.dataforge.plots.jfreechart.JFreeChartFrame
 import hep.dataforge.tables.Adapters
-import hep.dataforge.values.ValueMap
-import inr.numass.data.analyzers.TimeAnalyzer
-import inr.numass.data.api.NumassPoint
-import javafx.beans.Observable
+import hep.dataforge.tables.Table
 import javafx.beans.binding.DoubleBinding
 import javafx.collections.FXCollections
+import javafx.collections.MapChangeListener
 import javafx.collections.ObservableMap
 import javafx.scene.image.ImageView
 import kotlinx.coroutines.Dispatchers
+import kotlinx.coroutines.Job
+import kotlinx.coroutines.javafx.JavaFx
+import kotlinx.coroutines.launch
+import kotlinx.coroutines.withContext
 import tornadofx.*
 
 class TimeView : View(title = "Numass time spectrum plot", icon = ImageView(dfIcon)) {
 
+    private val dataController by inject<DataController>()
+
     private val frame = JFreeChartFrame().configure {
         "title" to "Time plot"
         node("xAxis") {
@@ -47,129 +45,65 @@ class TimeView : View(title = "Numass time spectrum plot", icon = ImageView(dfIc
         }.setType<DataPlot>()
     }
 
-//    val stepProperty = SimpleDoubleProperty()
-//    var step by stepProperty
-//
-//    private val container = PlotContainer(frame).apply {
-//        val binningSelector: ChoiceBox<Int> = ChoiceBox(FXCollections.observableArrayList(1, 5, 10, 20, 50)).apply {
-//            minWidth = 0.0
-//            selectionModel.selectLast()
-//            stepProperty.bind(this.selectionModel.selectedItemProperty())
-//        }
-//        addToSideBar(0, binningSelector)
-//    }
-
     private val container = PlotContainer(frame)
 
-    private val data: ObservableMap<String, NumassPoint> = FXCollections.observableHashMap()
-    private val plots: ObservableMap<String, Goal<Plottable>> = FXCollections.observableHashMap()
+    //private val data: ObservableMap<String, NumassPoint> = FXCollections.observableHashMap()
+    private val data get() = dataController.points
+    private val plotJobs: ObservableMap<String, Job> = FXCollections.observableHashMap()
 
     val isEmpty = booleanBinding(data) { isEmpty() }
 
     private val progress = object : DoubleBinding() {
         init {
-            bind(plots)
+            bind(plotJobs)
         }
 
-        override fun computeValue(): Double {
-            return plots.values.count { it.isDone }.toDouble() / data.size;
-        }
+        override fun computeValue(): Double = plotJobs.values.count { it.isCompleted }.toDouble() / data.size
 
     }
 
     init {
-        data.addListener { _: Observable ->
-            invalidate()
+        data.addListener(MapChangeListener { change ->
+            val key = change.key.toString()
+            if (change.wasAdded()) {
+                replotOne(key, change.valueAdded)
+            } else if(change.wasRemoved()){
+                plotJobs[key]?.cancel()
+                plotJobs.remove(key)
+                frame.plots.remove(Name.ofSingle(key))
+                progress.invalidate()
             }
+        })
+
     }
 
     override val root = borderpane {
         center = container.root
     }
 
-    /**
-     * Put or replace current plot with name `key`
-     */
-    operator fun set(key: String, point: NumassPoint) {
-        data[key] = point
-    }
+    private fun replotOne(key: String, point: DataController.CachedPoint) {
+        plotJobs[key]?.cancel()
+        plotJobs[key] = app.context.launch {
+            try {
+                val histogram: Table = point.timeSpectrum.await()
 
-    fun addAll(data: Map<String, NumassPoint>) {
-        this.data.putAll(data);
-    }
-
-    private val analyzer = TimeAnalyzer();
-
-
-    private fun invalidate() {
-        data.forEach { key, point ->
-            plots.getOrPut(key) {
-                runGoal<Plottable>(app.context, "loadAmplitudeSpectrum_$key", Dispatchers.IO) {
-
-                    val initialEstimate = analyzer.analyze(point)
-                    val cr = initialEstimate.getDouble("cr")
-
-                    val binNum = 200//inputMeta.getInt("binNum", 1000);
-                    val binSize = 1.0 / cr * 10 / binNum * 1e6//inputMeta.getDouble("binSize", 1.0 / cr * 10 / binNum * 1e6)
-
-                    val histogram = analyzer.getEventsWithDelay(point, Meta.empty())
-                            .map { it.second.toDouble() / 1000.0 }
-                            .groupBy { Math.floor(it / binSize) }
-                            .toSortedMap()
-                            .map {
-                                ValueMap.ofPairs("x" to it.key, "count" to it.value.count())
-                            }
-
-                    DataPlot(key, adapter = Adapters.buildXYAdapter("x", "count"))
+                val plot = DataPlot(key, adapter = Adapters.buildXYAdapter("x", "count"))
                     .configure {
                         "showLine" to true
                         "showSymbol" to false
                         "showErrors" to false
                         "connectionType" to "step"
                     }.fillData(histogram)
-
-                } ui { plot ->
+                withContext(Dispatchers.JavaFx) {
                     frame.add(plot)
-                    progress.invalidate()
-                } except {
+                }
+            } finally {
+                withContext(Dispatchers.JavaFx) {
                     progress.invalidate()
                 }
             }
-            plots.keys.filter { !data.containsKey(it) }.forEach { remove(it) }
         }
     }
 
-    fun clear() {
-        data.clear()
-        plots.values.forEach {
-            it.cancel()
-        }
-        plots.clear()
-        invalidate()
-    }
-
-    /**
-     * Remove the plot and cancel loading task if it is in progress.
-     */
-    fun remove(name: String) {
-        frame.plots.remove(Name.ofSingle(name))
-        plots[name]?.cancel()
-        plots.remove(name)
-        data.remove(name)
-        progress.invalidate()
-    }
-
-    /**
-     * Set frame content to the given map. All keys not in the map are removed.
-     */
-    fun setAll(map: Map<String, NumassPoint>) {
-        plots.clear();
-        //Remove obsolete keys
-        data.keys.filter { !map.containsKey(it) }.forEach {
-            remove(it)
-        }
-        this.addAll(map);
-    }
-
 }
 

numass-viewer/src/main/kotlin/inr/numass/viewer/Viewer.kt

@@ -8,6 +8,7 @@ import hep.dataforge.fx.dfIcon
 import javafx.stage.Stage
 import org.slf4j.LoggerFactory
 import tornadofx.*
+import kotlin.system.exitProcess
 
 /**
  * Created by darksnake on 14-Apr-17.
@@ -28,6 +29,7 @@ class Viewer : App(MainView::class) {
         context.close()
         Global.terminate();
         super.stop()
+        exitProcess(0)
     }
 }
 

numass-viewer/src/main/kotlin/inr/numass/viewer/test/ComponentTest.kt

@@ -1,68 +0,0 @@
-package inr.numass.viewer.test
-
-import hep.dataforge.context.Global
-import hep.dataforge.fx.dfIcon
-import hep.dataforge.nullable
-import hep.dataforge.tables.Table
-import inr.numass.data.api.NumassPoint
-import inr.numass.data.api.NumassSet
-import inr.numass.data.storage.NumassDirectory
-import inr.numass.viewer.AmplitudeView
-import inr.numass.viewer.HVView
-import inr.numass.viewer.SpectrumView
-import javafx.application.Application
-import javafx.scene.image.ImageView
-import kotlinx.coroutines.launch
-import tornadofx.*
-import java.io.File
-import java.util.concurrent.ConcurrentHashMap
-
-class ViewerComponentsTestApp : App(ViewerComponentsTest::class)
-
-class ViewerComponentsTest : View(title = "Numass viewer test", icon = ImageView(dfIcon)) {
-
-    //val rootDir = File("D:\\Work\\Numass\\data\\2017_05\\Fill_2")
-
-    //val set: NumassSet = NumassStorageFactory.buildLocal(rootDir).provide("loader::set_8", NumassSet::class.java).orElseThrow { RuntimeException("err") }
-
-
-    private val cache: MutableMap<NumassPoint, Table> = ConcurrentHashMap()
-    val context = Global
-
-    val amp: AmplitudeView by inject(params = mapOf("cache" to cache))//= AmplitudeView(immutable = immutable)
-    val sp: SpectrumView by inject(params = mapOf("cache" to cache))
-    val hv: HVView by inject()
-
-    override val root = borderpane {
-        top {
-            button("Click me!") {
-                action {
-                    context.launch {
-                        val set: NumassSet = NumassDirectory.INSTANCE.read(Global, File("D:\\Work\\Numass\\data\\2017_05\\Fill_2").toPath())
-                                ?.provide("loader::set_2", NumassSet::class.java).nullable
-                                ?: kotlin.error("Error")
-                        update(set)
-                    }
-                }
-            }
-        }
-        center {
-            tabpane {
-                tab("amplitude", amp.root)
-                tab("spectrum", sp.root)
-                tab("hv", hv.root)
-            }
-        }
-    }
-
-    fun update(set: NumassSet) {
-        amp.setAll(set.points.filter { it.voltage != 16000.0 }.associateBy { "point_${it.voltage}" })
-        sp["test"] = set
-        hv[set.name] = set
-    }
-}
-
-
-fun main(args: Array<String>) {
-    Application.launch(ViewerComponentsTestApp::class.java, *args)
-}