implemented file object storage

numass-storage/numass-client/src/main/groovy/inr/numass/scripts/TestClient.groovy

@@ -26,8 +26,6 @@ import inr.numass.client.NumassClient
 
 new StorageManager().startGlobal();
 
-
-
 MetaStreamWriter parser = new JSONMetaWriter();
     
 println "Starting Numass test client..."
@@ -38,7 +36,7 @@ BufferedReader br = new BufferedReader(new InputStreamReader(System.in))
 while(line == null || !line.startsWith("exit")){
     //    print ">"
     line = br.readLine();
-    if(!line.startsWith("exit")){
+    if(line!= null && !line.startsWith("exit")){
         NumassClient.runComand("127.0.0.1", 8335, line.split(" "));
     }
 }

numass-storage/numass-client/src/main/groovy/inr/numass/scripts/TestNotes.groovy

@@ -0,0 +1,20 @@
+/*
+ * To change this license header, choose License Headers in Project Properties.
+ * To change this template file, choose Tools | Templates
+ * and open the template in the editor.
+ */
+
+package inr.numass.scripts
+
+import hep.dataforge.io.MetaStreamReader
+import hep.dataforge.io.MetaStreamWriter
+import hep.dataforge.meta.Meta
+import hep.dataforge.storage.commons.JSONMetaWriter
+import hep.dataforge.storage.commons.StorageManager
+import inr.numass.client.NumassClient
+
+new StorageManager().startGlobal();
+
+MetaStreamWriter parser = new JSONMetaWriter();
+
+NumassClient.runComand("127.0.0.1", 8336, "addNote", "This is my note with <strong>html</strong>");

numass-storage/numass-client/src/main/java/inr/numass/client/NumassClient.java

@@ -36,6 +36,7 @@ import java.net.Socket;
 import java.nio.ByteBuffer;
 import java.nio.channels.FileChannel;
 import java.nio.file.StandardOpenOption;
+import java.time.Instant;
 import java.util.Arrays;
 import java.util.HashMap;
 import java.util.Map;
@@ -203,6 +204,23 @@ public class NumassClient extends MessageFactory implements Closeable {
         return sendAndRecieve(env.build()).meta();
     }
 
+    public Meta addNote(String text, Instant time) {
+        EnvelopeBuilder env = requestActionBase("numass.notes", "push");
+        env.putMetaValue("note.text", text);
+        if (time != null) {
+            env.putMetaValue("note.time", time);
+        }
+        return sendAndRecieve(env.build()).meta();
+    }
+
+    public Meta getNotes(int limit) {
+        EnvelopeBuilder env = requestActionBase("numass.notes", "pull");
+        if (limit > 0) {
+            env.putMetaValue("limit", limit);
+        }
+        return sendAndRecieve(env.build()).meta();
+    }
+
     public static void main(String[] args) {
         new StorageManager().startGlobal();
 
@@ -224,8 +242,8 @@ public class NumassClient extends MessageFactory implements Closeable {
 
     }
 
-    public static void runComand(String ip, int port, String[] args) {
+    public static void runComand(String ip, int port, String... args) {
-        checkArgLength(args, 1);
+        checkArgLength(1, args);
         try (NumassClient client = new NumassClient(ip, port)) {
             switch (args[0]) {
                 case "getRun":
@@ -237,7 +255,7 @@ public class NumassClient extends MessageFactory implements Closeable {
                     }
                     return;
                 case "setRun":
-                    checkArgLength(args, 2);
+                    checkArgLength(2, args);
                     Meta setRun = client.startRun(args[1]);
                     if (setRun.getBoolean("success", true)) {
                         System.out.println(setRun.getString("run.path"));
@@ -246,7 +264,7 @@ public class NumassClient extends MessageFactory implements Closeable {
                     }
                     return;
                 case "getState":
-                    checkArgLength(args, 2);
+                    checkArgLength(2, args);
                     String stateName = args[1];
                     Map<String, Value> states = client.getStates(stateName);
                     if (states != null) {
@@ -256,7 +274,7 @@ public class NumassClient extends MessageFactory implements Closeable {
                     }
                     return;
                 case "setState":
-                    checkArgLength(args, 3);
+                    checkArgLength(3, args);
                     String setStateName = args[1];
                     String setStateValue = args[2];
                     Meta setStateMeta = client.setState(setStateName, setStateValue);
@@ -267,7 +285,7 @@ public class NumassClient extends MessageFactory implements Closeable {
                     }
                     return;
                 case "pushPoint":
-                    checkArgLength(args, 2);
+                    checkArgLength(2, args);
                     String path;
                     String fileName;
                     if (args.length == 2) {
@@ -285,6 +303,16 @@ public class NumassClient extends MessageFactory implements Closeable {
                     } else {
                         System.out.println("Error: operaton failed");
                     }
+                    return;
+                case "addNote":
+                    checkArgLength(2, args);
+                    String note = args[1];
+                    Meta addNote = client.addNote(note, null);
+                    if (addNote.getBoolean("success", true)) {
+                        System.out.println("OK");
+                    } else {
+                        System.out.println("Error: operaton failed");
+                    }
             }
 
         } catch (IOException ex) {
@@ -294,7 +322,7 @@ public class NumassClient extends MessageFactory implements Closeable {
         }
     }
 
-    private static void checkArgLength(String[] args, int length) {
+    private static void checkArgLength(int length, String... args) {
         if (args.length < length) {
             LoggerFactory.getLogger("NumassClient").error("Command line to short");
             System.exit(1);

numass-storage/numass-server/src/main/groovy/inr/numass/scripts/TestServer.groovy

@@ -18,7 +18,7 @@ package inr.numass.scripts
 import hep.dataforge.storage.filestorage.FileStorage
 import inr.numass.server.NumassServer
 
-String path = "D:\\temp\\test\\numass\\"
+String path = "D:\\temp\\test\\numass-server\\"
 
 FileStorage storage = FileStorage.in(new File(path), null);
 

numass-storage/numass-server/src/main/java/inr/numass/server/NumassNote.java

@@ -0,0 +1,77 @@
+/*
+ * To change this license header, choose License Headers in Project Properties.
+ * To change this template file, choose Tools | Templates
+ * and open the template in the editor.
+ */
+package inr.numass.server;
+
+import hep.dataforge.meta.Meta;
+import hep.dataforge.meta.MetaBuilder;
+import java.io.Serializable;
+import java.time.Instant;
+
+/**
+ * A progress note for numass run
+ *
+ * @author Alexander Nozik
+ */
+public class NumassNote implements Serializable {
+
+    public static NumassNote buildFrom(Meta meta) {
+        String text = meta.getString("text", "");
+        if (meta.hasValue("time")) {
+            Instant time = meta.getValue("time").timeValue();
+            return new NumassNote(text, time);
+        } else {
+            return new NumassNote(text);
+        }
+    }
+
+    private final String content;
+    private final String ref;
+    private final Instant time;
+
+    public NumassNote(String content, Instant time) {
+        this.content = content;
+        this.time = time;
+        this.ref = "#" + time.hashCode();
+    }
+
+    public NumassNote(String content) {
+        this.content = content;
+        this.time = Instant.now();
+        this.ref = "#" + time.hashCode();
+    }
+
+    /**
+     * Text content
+     *
+     * @return
+     */
+    public String content() {
+        return content;
+    }
+
+    /**
+     *
+     * @return
+     */
+    public Instant time() {
+        return time;
+    }
+
+    /**
+     * Unique note name for references
+     *
+     * @return
+     */
+    public String ref() {
+        return ref;
+    }
+
+    public Meta toMeta() {
+        return new MetaBuilder("note").putValue("time", time)
+                .putValue("ref", ref)
+                .putValue("text", content);
+    }
+}

numass-storage/numass-server/src/main/java/inr/numass/server/NumassRun.java

@@ -18,6 +18,7 @@ package inr.numass.server;
 import hep.dataforge.data.binary.Binary;
 import hep.dataforge.exceptions.StorageException;
 import hep.dataforge.io.envelopes.Envelope;
+import hep.dataforge.io.envelopes.EnvelopeBuilder;
 import hep.dataforge.io.envelopes.Responder;
 import hep.dataforge.meta.Annotated;
 import hep.dataforge.meta.Meta;
@@ -25,8 +26,15 @@ import hep.dataforge.storage.api.StateLoader;
 import hep.dataforge.storage.commons.LoaderFactory;
 import hep.dataforge.storage.commons.MessageFactory;
 import hep.dataforge.values.Value;
-import inr.numass.storage.NumassStorage;
 import java.io.IOException;
+import java.time.Instant;
+import java.util.stream.Stream;
+import hep.dataforge.storage.api.ObjectLoader;
+import inr.numass.storage.NumassStorage;
+import java.util.Comparator;
+import java.util.function.Function;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 /**
  * This object governs remote access to numass storage and performs reading and
@@ -37,6 +45,7 @@ import java.io.IOException;
 public class NumassRun implements Annotated, Responder {
 
     public static final String RUN_STATE = "@run";
+    public static final String RUN_NOTES = "@notes";
 
     private final String runPath;
     /**
@@ -48,13 +57,23 @@ public class NumassRun implements Annotated, Responder {
      * Default state loader for this run
      */
     private final StateLoader states;
+
+    private final ObjectLoader noteLoader;
     private final MessageFactory factory;
 
+    private final Logger logger;
+
+//    /**
+//     * A set with inverted order of elements (last note first)
+//     */
+//    private final Set<NumassNote> notes = new TreeSet<>((NumassNote o1, NumassNote o2) -> -o1.time().compareTo(o2.time()));
     public NumassRun(String path, NumassStorage workStorage, MessageFactory factory) throws StorageException {
         this.storage = workStorage;
         this.states = LoaderFactory.buildStateLoder(storage, RUN_STATE, null);
+        this.noteLoader = LoaderFactory.buildObjectLoder(storage, RUN_NOTES, null);
         this.factory = factory;
         this.runPath = path;
+        logger = LoggerFactory.getLogger("CURRENT_RUN");
     }
 
     public Value getState(String name) {
@@ -88,12 +107,85 @@ public class NumassRun implements Annotated, Responder {
                     default:
                         throw new UnknownNumassActionException(action, UnknownNumassActionException.Cause.NOT_SUPPORTED);
                 }
+            case "numass.notes":
+                switch (action) {
+                    case "push":
+                        return pushNote(message);
+                    case "pull":
+                        return pullNotes(message);
+                    default:
+                        throw new UnknownNumassActionException(action, UnknownNumassActionException.Cause.NOT_SUPPORTED);
+                }
+
             default:
                 throw new RuntimeException("Wrong message type");
         }
     }
 
-    public Envelope pushNumassPoint(Envelope message) {
+    public synchronized void addNote(String text, Instant time) throws StorageException {
+        NumassNote note = new NumassNote(text, time);
+        addNote(note);
+    }
+
+    @SuppressWarnings("unchecked")
+    public synchronized void addNote(NumassNote note) throws StorageException {
+        noteLoader.push(note.ref(), note);
+    }
+
+    /**
+     * Stream of notes in the last to first order
+     *
+     * @return
+     */
+    @SuppressWarnings("unchecked")
+    public Stream<NumassNote> getNotes() {
+        return noteLoader.fragmentNames().stream().<NumassNote>map(new Function<String, NumassNote>() {
+            @Override
+            public NumassNote apply(String name) {
+                try {
+                    return (NumassNote) noteLoader.pull(name);
+                } catch (StorageException ex) {
+                    return (NumassNote) null;
+                }
+            }
+        }).sorted(new Comparator<NumassNote>() {
+            @Override
+            public int compare(NumassNote o1, NumassNote o2) {
+                return -o1.time().compareTo(o2.time());
+            }
+        });
+    }
+
+    private synchronized Envelope pushNote(Envelope message) {
+        try {
+            if (message.meta().hasNode("note")) {
+                for (Meta node : message.meta().getNodes("note")) {
+                    addNote(NumassNote.buildFrom(node));
+                }
+            } else {
+                addNote(NumassNote.buildFrom(message.meta()));
+            }
+            return factory.okResponseBase(message, false, false).build();
+        } catch (Exception ex) {
+            logger.error("Failed to push note", ex);
+            return factory.errorResponseBase(message, ex).build();
+        }
+    }
+
+    private Envelope pullNotes(Envelope message) {
+        EnvelopeBuilder envelope = factory.okResponseBase(message, true, false);
+        int limit = message.meta().getInt("limit", -1);
+        //TODO add time window and search conditions here
+        Stream<NumassNote> stream = getNotes();
+        if (limit > 0) {
+            stream = stream.limit(limit);
+        }
+        stream.forEach((NumassNote note) -> envelope.putMetaNode(note.toMeta()));
+
+        return envelope.build();
+    }
+
+    private Envelope pushNumassPoint(Envelope message) {
         try {
             String filePath = message.meta().getString("path", "");
             String fileName = message.meta().getString("name")
@@ -102,6 +194,7 @@ public class NumassRun implements Annotated, Responder {
             //TODO add checksum here
             return factory.okResponseBase("numass.data.push.response", false, false).build();
         } catch (StorageException | IOException ex) {
+            logger.error("Failed to push point", ex);
             return factory.errorResponseBase("numass.data.push.response", ex).build();
         }
     }

numass-storage/numass-server/src/main/java/inr/numass/server/NumassServer.java

@@ -24,7 +24,7 @@ import hep.dataforge.storage.commons.AbstractNetworkListener;
 import hep.dataforge.storage.commons.LoaderFactory;
 import hep.dataforge.storage.commons.StorageManager;
 import hep.dataforge.storage.filestorage.FileStorage;
-import hep.dataforge.storage.servlet.SorageRatpackHandler;
+import hep.dataforge.storage.servlet.StorageRatpackHandler;
 import inr.numass.storage.NumassStorage;
 import java.io.File;
 import java.io.IOException;
@@ -84,7 +84,7 @@ public class NumassServer extends AbstractNetworkListener {
                 .serverConfig((ServerConfigBuilder config) -> config.port(port))
                 .handlers((Chain chain) -> chain
                         .get(new NumassRootHandler(this))
-                        .get("storage", new SorageRatpackHandler(root))
+                        .get("storage", new NumassStorageHandler(root))
                 )
         );
     }
@@ -114,6 +114,7 @@ public class NumassServer extends AbstractNetworkListener {
             case "numass.state":
                 return getRootState().respond(message);
             case "numass.data":
+            case "numass.notes":
             case "numass.run.state":
                 return getRun().respond(message);
             case "numass.control":
@@ -282,13 +283,13 @@ public class NumassServer extends AbstractNetworkListener {
 //            }
 //            b.append("<div class=\"shifted\">\n");
 //            for (Loader loader : storage.loaders().values()) {
-//                renderLoader(ctx, b, loader);
+//                defaultRenderLoader(ctx, b, loader);
 //            }
 //            b.append("</div>\n");
 //            b.append("</div>\n");
 //        }
 //
-//        private void renderLoader(Context ctx, StringBuilder b, Loader loader) {
+//        private void defaultRenderLoader(Context ctx, StringBuilder b, Loader loader) {
 //            String href = "/storage?path="+loader.getFullPath();
 //            b.append(String.format("<p><a href=\"%s\">%s</a> (%s)</p>", href, loader.getName(), loader.getType()));
 //        }

numass-storage/numass-server/src/main/java/inr/numass/server/NumassStorageHandler.java

@@ -0,0 +1,89 @@
+/*
+ * To change this license header, choose License Headers in Project Properties.
+ * To change this template file, choose Tools | Templates
+ * and open the template in the editor.
+ */
+package inr.numass.server;
+
+import freemarker.template.Template;
+import hep.dataforge.exceptions.StorageException;
+import hep.dataforge.storage.api.ObjectLoader;
+import hep.dataforge.storage.api.Storage;
+import hep.dataforge.storage.servlet.StorageRatpackHandler;
+import hep.dataforge.storage.servlet.Utils;
+import java.io.StringWriter;
+import java.util.Comparator;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.function.Function;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
+import org.slf4j.LoggerFactory;
+import ratpack.handling.Context;
+
+/**
+ *
+ * @author Alexander Nozik
+ */
+public class NumassStorageHandler extends StorageRatpackHandler {
+
+    public NumassStorageHandler(Storage root) {
+        super(root);
+    }
+
+    @Override
+    @SuppressWarnings("unchecked")
+    protected void renderObjects(Context ctx, ObjectLoader loader) {
+        if (NumassRun.RUN_NOTES.equals(loader.getName())) {
+            try {
+                ctx.getResponse().contentType("text/html");
+                Template template = Utils.freemarkerConfig().getTemplate("NoteLoader.ftl");
+
+                List<String> notes = getNotes(loader).limit(100).map(note->render(note)).collect(Collectors.toList());
+
+                Map data = new HashMap(2);
+                data.put("notes", notes);
+
+                StringWriter writer = new StringWriter();
+                template.process(data, writer);
+
+                ctx.render(writer.toString());
+            } catch (Exception ex) {
+                LoggerFactory.getLogger(getClass()).error("Failed to render template", ex);
+                ctx.render(ex.toString());
+            }
+        } else {
+            super.renderObjects(ctx, loader);
+        }
+    }
+    
+    private String render(NumassNote note){
+        return String.format("%s: <strong>%s</strong> %s", note.ref(), note.time(), note.content());
+    }
+    
+    /**
+     * Stream of notes in the last to first order
+     *
+     * @return
+     */
+    @SuppressWarnings("unchecked")
+    private Stream<NumassNote> getNotes(ObjectLoader noteLoader) {
+        return noteLoader.fragmentNames().stream().<NumassNote>map(new Function<String, NumassNote>() {
+            @Override
+            public NumassNote apply(String name) {
+                try {
+                    return (NumassNote) noteLoader.pull(name);
+                } catch (StorageException ex) {
+                    return (NumassNote) null;
+                }
+            }
+        }).sorted(new Comparator<NumassNote>() {
+            @Override
+            public int compare(NumassNote o1, NumassNote o2) {
+                return -o1.time().compareTo(o2.time());
+            }
+        });
+    }    
+
+}

numass-storage/numass-server/src/main/java/inr/numass/server/UnknownNumassActionException.java

@@ -13,35 +13,35 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-package inr.numass.server;
+package inr.numass.server;
-
+
-/**
+/**
- *
+ *
- * @author Alexander Nozik
+ * @author Alexander Nozik
- */
+ */
-public class UnknownNumassActionException extends RuntimeException {
+public class UnknownNumassActionException extends RuntimeException {
-
+
-    public enum Cause {
+    public enum Cause {
-        IN_DEVELOPMENT,
+        IN_DEVELOPMENT,
-        NOT_SUPPORTED,
+        NOT_SUPPORTED,
-        DEPRECATED
+        DEPRECATED
-    }
+    }
-
+
-    private final String command;
+    private final String command;
-    private final Cause cause;
+    private final Cause cause;
-
+
-    /**
+    /**
-     * Creates a new instance of <code>UnknownCommandException</code> without
+     * Creates a new instance of <code>UnknownCommandException</code> without
-     * detail message.
+     * detail message.
-     */
+     */
-    public UnknownNumassActionException(String command, Cause cause) {
+    public UnknownNumassActionException(String command, Cause cause) {
-        this.command = command;
+        this.command = command;
-        this.cause = cause;
+        this.cause = cause;
-    }
+    }
-
+
-    @Override
+    @Override
-    public String getMessage() {
+    public String getMessage() {
-        return String.format("Can't run the action '%s' because it is %s", command, cause.name());
+        return String.format("Can't run the action '%s' because it is %s", command, cause.name());
-    }
+    }
-
+
-}
+}

numass-storage/numass-server/src/main/resources/templates/NoteLoader.ftl

@@ -0,0 +1,14 @@
+<!DOCTYPE html>
+<html>
+    <head>
+        <title>Numass run notes</title>
+        <meta charset="UTF-8">
+        <meta http-equiv="refresh" content="30">
+    </head>
+    <body>
+        <h1> Numass experiment run notes:</h1>
+        <#list notes as note>
+            <p>${note};</p> 
+        </#list>
+    </body>
+</html>

numass-storage/src/main/java/inr/numass/storage/NumassDataLoader.java

@@ -21,7 +21,6 @@ import hep.dataforge.io.envelopes.DefaultEnvelopeReader;
 import hep.dataforge.io.envelopes.Envelope;
 import hep.dataforge.meta.Meta;
 import hep.dataforge.meta.MetaBuilder;
-import hep.dataforge.storage.api.BinaryLoader;
 import hep.dataforge.storage.api.Storage;
 import hep.dataforge.storage.loaders.AbstractLoader;
 import inr.numass.data.NMEvent;
@@ -54,13 +53,14 @@ import static org.apache.commons.vfs2.FileType.FOLDER;
 import org.apache.commons.vfs2.VFS;
 import org.apache.commons.vfs2.provider.local.DefaultLocalFileProvider;
 import org.slf4j.LoggerFactory;
+import hep.dataforge.storage.api.ObjectLoader;
 
 /**
  * The reader for numass main detector data directory or zip format;
  *
  * @author darksnake
  */
-public class NumassDataLoader extends AbstractLoader implements BinaryLoader<Envelope>, NumassData {
+public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Envelope>, NumassData {
     //FIXME administer resource release
 
     /**