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Numass statistical count rate

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This commit is contained in:
darksnake 2017-06-27 16:24:02 +03:00
parent 36db0c3811
commit c08e52a398
27 changed files with 247 additions and 204 deletions
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4
numass-control/build.gradle
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@ -1,5 +1,5 @@
buildscript {
ext.kotlin_version = '1.1.2-5'
ext.kotlin_version = '1.1.3'
repositories {
mavenCentral()
@ -29,7 +29,7 @@ dependencies {
//graphics
compile 'org.controlsfx:controlsfx:8.40.12'
compile "no.tornado:tornadofx:1.7.5"
compile "no.tornado:tornadofx:1.7.8"
}
task installAll(type: Copy) {

16
numass-control/cryotemp/src/main/kotlin/inr/numass/control/cryotemp/PKT8ViewConnection.kt
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@ -65,13 +65,13 @@ class PKT8ViewConnection : DeviceViewConnection<PKT8Device>(), MeasurementListen
private var plotButton: ToggleButton by singleAssign()
private var logButton: ToggleButton by singleAssign()
private val logWindow = FragmentWindow(LogFragment().apply {
addLogHandler(device.logger)
})
// private val logWindow = FragmentWindow(LogFragment().apply {
// addLogHandler(device.logger)
// })
// need those to have strong references to listeners
private val plotView = CryoPlotView();
private val plotWindow = FragmentWindow(FXFragment.buildFromNode(plotView.title) { plotView.root })
// private val plotWindow = FragmentWindow(FXFragment.buildFromNode(plotView.title) { plotView.root })
override val root = borderpane {
top {
@ -92,12 +92,16 @@ class PKT8ViewConnection : DeviceViewConnection<PKT8Device>(), MeasurementListen
plotButton = togglebutton("Plot") {
isSelected = false
plotWindow.bindTo(this)
FragmentWindow.build(this) { FXFragment.buildFromNode(plotView.title) { plotView.root } }
}
logButton = togglebutton("Log") {
isSelected = false
logWindow.bindTo(this)
FragmentWindow.build(this) {
LogFragment().apply {
addLogHandler(device.logger)
}
}
}
}
}

10
numass-control/msp/src/main/kotlin/inr/numass/control/msp/MspViewConnection.kt
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@ -109,9 +109,9 @@ class MspViewConnection() : DeviceViewConnection<MspDevice>(), DeviceListener, N
}
}
private val logWindow = FragmentWindow(LogFragment().apply {
addLogHandler(device.logger)
})
// private val logWindow = FragmentWindow(LogFragment().apply {
// addLogHandler(device.logger)
// })
val filamentProperty = SimpleObjectProperty<Int>(this, "filament", 1).apply {
addListener { _, oldValue, newValue ->
@ -173,7 +173,9 @@ class MspViewConnection() : DeviceViewConnection<MspDevice>(), DeviceListener, N
togglebutton("Log") {
isSelected = false
logWindow.bindTo(this)
FragmentWindow.build(this){LogFragment().apply {
addLogHandler(device.logger)
}}
}
}
}

2
numass-control/src/main/kotlin/inr/numass/control/DeviceViewConnection.kt
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@ -141,7 +141,7 @@ abstract class DeviceViewConnection<D : Device> : Component(), Connection, Devic
}
togglebutton("View") {
isSelected = false
FragmentWindow(FXFragment.buildFromNode(device.name) { fxNode }).bindTo(this)
FragmentWindow.build(this){FXFragment.buildFromNode(device.name) { fxNode }}
}
}
}

10
numass-control/vac/src/main/kotlin/inr/numass/control/readvac/VacCollectorViewConnection.kt
View File

@ -74,9 +74,9 @@ class VacCollectorViewConnection : DeviceViewConnection<VacCollectorDevice>() {
setValue("thickness", 3)
}
private val logWindow = FragmentWindow(LogFragment().apply {
addLogHandler(device.logger)
})
// private val logWindow = FragmentWindow(LogFragment().apply {
// addLogHandler(device.logger)
// })
override val root = borderpane {
top {
@ -89,7 +89,9 @@ class VacCollectorViewConnection : DeviceViewConnection<VacCollectorDevice>() {
separator(Orientation.VERTICAL)
togglebutton("Log") {
isSelected = false
logWindow.bindTo(this)
FragmentWindow.build(this){LogFragment().apply {
addLogHandler(device.logger)
}}
}
}
}

26
numass-core/src/main/java/inr/numass/data/NumassDataReader.java → numass-core/src/main/java/inr/numass/data/LegacyDataReader.java
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@ -23,35 +23,37 @@ import java.io.*;
import java.time.LocalDateTime;
import java.time.ZoneOffset;
import java.time.format.DateTimeFormatter;
import java.util.ArrayList;
import java.util.List;
import java.util.Scanner;
/**
*
* @author Darksnake, based on program by S.V.Zadorozhny, 1996
*/
public class NumassDataReader {
public class LegacyDataReader {
private final InputStream stream;
private String name;
private double HVdev = 2.468555393226049;
private boolean noUset = false;
public NumassDataReader(Binary file, Meta config) throws IOException {
public LegacyDataReader(Binary file, Meta config) throws IOException {
this(file.getStream(), config.getString(FileDataFactory.FILE_NAME_KEY), config);
}
public NumassDataReader(File file) throws IOException {
public LegacyDataReader(File file) throws IOException {
this(new FileInputStream(file), file.getName(), Meta.empty());
}
public NumassDataReader(String file, String fname, Meta config) throws FileNotFoundException {
public LegacyDataReader(String file, String fname, Meta config) throws FileNotFoundException {
this(new FileInputStream(file), fname, config);
if ((fname == null) || (fname.isEmpty())) {
name = file;
}
}
public NumassDataReader(InputStream is, String fname, Meta config) {
public LegacyDataReader(InputStream is, String fname, Meta config) {
this.stream = new BufferedInputStream(is);
this.name = fname;
HVdev = config.getDouble("HVdev", 2.468555393226049);
@ -204,12 +206,14 @@ public class NumassDataReader {
}
lab = readByte();
List<NMEvent> events = new ArrayList<>();
while (lab == 0xBF) {
skip(4);//badHV
lab = readByte();
}
do {
point.putEvent(readEvent(lab, timeDiv));
events.add(readEvent(lab, timeDiv));
lab = readByte();
} while (lab != 0xAF);
@ -226,7 +230,6 @@ public class NumassDataReader {
absoluteTime = absoluteTime.plusDays(1);
}
point.setStartTime(absoluteTime.toInstant(ZoneOffset.UTC));
rx = readBlock(4);
int Uread = rx[2] + 256 * rx[3];
@ -234,15 +237,14 @@ public class NumassDataReader {
skip(21);
point.setLength(time_out);
point.setUread(Uread / 10d / HVdev);
double uset;
if (noUset) {
point.setUset(Uread / 10d / HVdev);
uset = Uread / 10d / HVdev;
} else {
point.setUset(voltage / 10d);
uset = voltage / 10d;
}
return point;
return new RawNMPoint(uset, Uread / 10d / HVdev, events, time_out, absoluteTime.toInstant(ZoneOffset.UTC));
}
private long readTime() throws IOException {

4
numass-core/src/main/java/inr/numass/data/NMFile.java
View File

@ -47,11 +47,11 @@ public class NMFile extends NamedMetaHolder implements NumassData {
}
public static NMFile readStream(InputStream is, String fname, Meta config) throws IOException {
return new NMFile(new NumassDataReader(is, fname, config).read());
return new NMFile(new LegacyDataReader(is, fname, config).read());
}
public static NMFile readFile(File file) throws IOException {
return new NMFile(new NumassDataReader(file).read());
return new NMFile(new LegacyDataReader(file).read());
}
@Override

2
numass-core/src/main/java/inr/numass/data/NumassData.java
View File

@ -10,6 +10,7 @@ import hep.dataforge.meta.Meta;
import hep.dataforge.meta.Metoid;
import hep.dataforge.names.Named;
import hep.dataforge.tables.Table;
import org.jetbrains.annotations.NotNull;
import java.time.Instant;
import java.util.Iterator;
@ -29,6 +30,7 @@ public interface NumassData extends Named, Metoid, Iterable<NumassPoint> {
Stream<NumassPoint> stream();
@NotNull
@Override
default Iterator<NumassPoint> iterator() {
return stream().iterator();

4
numass-core/src/main/java/inr/numass/data/NumassDataUtils.java
View File

@ -45,7 +45,7 @@ public class NumassDataUtils {
}
int[] newArray = new int[first.getSpectrum().length];
Arrays.setAll(newArray, i -> first.getSpectrum()[i] + second.getSpectrum()[i]);
return new NMPoint(
return new NumassPointImpl(
first.getVoltage(),
Instant.EPOCH,
first.getLength() + second.getLength(),
@ -56,7 +56,7 @@ public class NumassDataUtils {
public static NumassPoint substractPoint(NumassPoint point, NumassPoint reference) {
int[] array = new int[point.getSpectrum().length];
Arrays.setAll(array, i -> Math.max(0, point.getSpectrum()[i] - reference.getSpectrum()[i]));
return new NMPoint(
return new NumassPointImpl(
point.getVoltage(),
point.getStartTime(),
point.getLength(),

4
numass-core/src/main/java/inr/numass/data/NMPoint.java → numass-core/src/main/java/inr/numass/data/NumassPointImpl.java
View File

@ -26,7 +26,7 @@ import java.util.stream.IntStream;
/**
* @author Darksnake
*/
public class NMPoint implements NumassPoint {
public class NumassPointImpl implements NumassPoint {
//TODO andThen to annotated and move some parameters to meta
private final int[] spectrum;
private Instant startTime;
@ -34,7 +34,7 @@ public class NMPoint implements NumassPoint {
private double pointLength;
private double u;
public NMPoint(double u, Instant startTime, double pointLength, int[] spectrum) {
public NumassPointImpl(double u, Instant startTime, double pointLength, int[] spectrum) {
this.startTime = startTime;
this.pointLength = pointLength;
this.spectrum = spectrum;

4
numass-core/src/main/java/inr/numass/data/PointBuilders.java
View File

@ -27,7 +27,7 @@ public class PointBuilders {
)),0
);
return new NMPoint(u, startTime, pointLength, spectrum);
return new NumassPointImpl(u, startTime, pointLength, spectrum);
}
private static int[] calculateSpectrum(RawNMPoint point) {
@ -37,7 +37,7 @@ public class PointBuilders {
@NotNull
public static NumassPoint readRawPoint(@NotNull RawNMPoint point) {
return new NMPoint(point.getUset(), point.getStartTime(), point.getLength(), calculateSpectrum(point));
return new NumassPointImpl(point.getUset(), point.getStartTime(), point.getLength(), calculateSpectrum(point));
}
private static int[] count(IntStream stream, int maxChannel) {

26
numass-core/src/main/java/inr/numass/data/RawNMFile.java
View File

@ -82,7 +82,7 @@ public class RawNMFile extends NamedMetaHolder {
for (RawNMPoint point : points) {
if (point.getUset() == U) {
if (res == null) {
res = point.clone();
res = point;
} else {
res = res.merge(point);
}
@ -104,7 +104,7 @@ public class RawNMFile extends NamedMetaHolder {
for (RawNMPoint point : points) {
if (point.getUread() == U) {
if (res == null) {
res = point.clone();
res = point;
} else {
res = res.merge(point);
}
@ -120,17 +120,17 @@ public class RawNMFile extends NamedMetaHolder {
return points;
}
public void putEvent(double U, short chanel, double time) {
for (RawNMPoint point : this.getData()) {
if (U == point.getUread()) {
point.putEvent(new NMEvent(chanel, time));
return;
}
}
RawNMPoint newpoint = new RawNMPoint();
newpoint.putEvent(new NMEvent(chanel, time));
this.putPoint(newpoint);
}
// public void putEvent(double U, short chanel, double time) {
// for (RawNMPoint point : this.getData()) {
// if (U == point.getUread()) {
// point.putEvent(new NMEvent(chanel, time));
// return;
// }
// }
// RawNMPoint newpoint = new RawNMPoint();
// newpoint.putEvent(new NMEvent(chanel, time));
// this.putPoint(newpoint);
// }
public void putPoint(RawNMPoint point) {
points.add(point);

85
numass-core/src/main/java/inr/numass/data/RawNMPoint.java
View File

@ -24,7 +24,7 @@ import java.util.List;
*
* @author Darksnake
*/
public class RawNMPoint implements Cloneable {
public class RawNMPoint {
public static final int MAX_EVENTS_PER_POINT = 260000;
public static int MAX_CHANEL = 4095;
@ -65,24 +65,22 @@ public class RawNMPoint implements Cloneable {
length = Double.NaN;
}
@Override
public RawNMPoint clone() {
ArrayList<NMEvent> newevents = new ArrayList<>();
for (NMEvent event : this.getEvents()) {
newevents.add(event);
}
return new RawNMPoint(getUset(), getUread(), newevents, getLength());
}
// @Override
// public RawNMPoint clone() {
// ArrayList<NMEvent> newevents = new ArrayList<>();
// newevents.addAll(this.getEvents());
// return new RawNMPoint(getUset(), getUread(), newevents, getLength());
// }
public Instant getStartTime() {
return startTime;
}
public double getCR() {
public double getCr() {
return getEventsCount() / getLength();
}
public double getCRError() {
public double getCrError() {
return Math.sqrt(getEventsCount()) / getLength();
}
@ -99,6 +97,7 @@ public class RawNMPoint implements Cloneable {
/**
* Measurement time
*
* @return the tset
*/
public double getLength() {
@ -131,18 +130,18 @@ public class RawNMPoint implements Cloneable {
}
public RawNMPoint merge(RawNMPoint point) {
RawNMPoint res = this.clone();
List<NMEvent> events = new ArrayList<>(this.events);
for (NMEvent newEvent : point.getEvents()) {
res.putEvent(new NMEvent(newEvent.getChanel(), newEvent.getTime() + this.getLength()));
events.add(new NMEvent(newEvent.getChanel(), newEvent.getTime() + this.getLength()));
}
res.length += point.getLength();
res.uread = (this.uread + point.uread) / 2;
return res;
double length = this.length + point.length;
double uread = (this.uread + point.uread) / 2;
return new RawNMPoint(this.uset, uread, events, length, this.startTime);
}
void putEvent(NMEvent event) {
events.add(event);
}
// void putEvent(NMEvent event) {
// events.add(event);
// }
public RawNMPoint selectChanels(int from, int to) {
assert to > from;
@ -156,30 +155,30 @@ public class RawNMPoint implements Cloneable {
return new RawNMPoint(getUset(), getUread(), res, getLength());
}
void setStartTime(Instant absouteTime) {
this.startTime = absouteTime;
}
// void setStartTime(Instant absouteTime) {
// this.startTime = absouteTime;
// }
//
// /**
// * @param tset the tset to set
// */
// void setLength(double tset) {
// this.length = tset;
// }
/**
* @param tset the tset to set
*/
void setLength(double tset) {
this.length = tset;
}
/**
* @param Uread the Uread to set
*/
void setUread(double Uread) {
assert Uread >= 0;
this.uread = Uread;
}
/**
* @param Uset the Uset to set
*/
void setUset(double Uset) {
this.uset = Uset;
}
// /**
// * @param Uread the Uread to set
// */
// void setUread(double Uread) {
// assert Uread >= 0;
// this.uread = Uread;
// }
//
// /**
// * @param Uset the Uset to set
// */
// void setUset(double Uset) {
// this.uset = Uset;
// }
}

42
numass-core/src/main/java/inr/numass/storage/NumassDataLoader.java
View File

@ -21,6 +21,9 @@ import hep.dataforge.io.ColumnedDataReader;
import hep.dataforge.io.envelopes.Envelope;
import hep.dataforge.meta.Meta;
import hep.dataforge.meta.MetaBuilder;
import hep.dataforge.providers.Provider;
import hep.dataforge.providers.Provides;
import hep.dataforge.providers.ProvidesNames;
import hep.dataforge.storage.api.ObjectLoader;
import hep.dataforge.storage.api.Storage;
import hep.dataforge.storage.filestorage.FileEnvelope;
@ -49,13 +52,11 @@ import java.util.stream.Stream;
*
* @author darksnake
*/
public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Envelope>, NumassData {
public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Envelope>, NumassData, Provider {
public static NumassDataLoader fromFile(Storage storage, Path zipFile) throws IOException {
throw new UnsupportedOperationException("TODO");
// FileObject zipRoot = VFS.getManager().createFileSystem(zipFile);
// return fromDir(storage, zipRoot, zipFile.getName().getBaseName());
}
@ -101,19 +102,6 @@ public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Env
return new NumassDataLoader(storage, name, annotation, items);
}
// private static Envelope readFile(Path file) {
// String fileName = file.getFileName().toString();
// if (fileName.equals(META_FRAGMENT_NAME)
// || fileName.equals(HV_FRAGMENT_NAME)
// || fileName.startsWith(POINT_FRAGMENT_NAME)) {
// return FileEnvelope.open(file, true);
// } else {
// return null;
// }
// //}
// }
/**
* "start_time": "2016-04-20T04:08:50",
*
@ -226,7 +214,7 @@ public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Env
* @param envelope
* @return
*/
public NumassPoint readPoint(Envelope envelope) {
private NumassPoint readPoint(Envelope envelope) {
return readPoint(envelope, PointBuilders::readRawPoint);
}
@ -347,6 +335,26 @@ public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Env
}
@Override
public String defaultTarget() {
return "nmPoint";
}
@Provides("nmPoint")
public Optional<NumassPoint> optPoint(String u) {
return stream().filter(it -> it.getVoltage() == Double.parseDouble(u)).findFirst();
}
@ProvidesNames("nmPoint")
public Stream<String> listHV() {
return stream().map(it -> Double.toString(it.getVoltage()));
}
@Provides("rawPoint")
public Optional<RawNMPoint> optRawPoint(String u) {
return this.getPoints().map(this::readRawPoint).filter(it -> it.getUset() == Double.parseDouble(u)).findFirst();
}
/**
* Return new NumassData using given transformation for each point
*

38
numass-main/src/main/groovy/inr/numass/data/PointAnalyzer.groovy Normal file
View File

@ -0,0 +1,38 @@
package inr.numass.data
import groovy.transform.CompileStatic
/**
* Created by darksnake on 27-Jun-17.
*/
@CompileStatic
class PointAnalyzer {
static Result analyzePoint(RawNMPoint point, double t0 = 0, int loChannel = 0, int upChannel = 4000) {
int totalN = 0
double totalT = 0;
NMEvent lastEvent = point.events[0];
for (int i = 1; i < point.events.size(); i++) {
NMEvent event = point.events[i];
double t = event.time - lastEvent.time;
if (t >= t0 && event.chanel <= upChannel && event.chanel >= loChannel) {
totalN++
totalT += t
}
lastEvent = event
}
double cr = 1d/(totalT/totalN - t0);
return new Result(cr: cr, crErr: cr / Math.sqrt(totalN), num: totalN, t0: t0, loChannel: loChannel, upChannel: upChannel)
}
static class Result {
double cr;
double crErr;
long num;
double t0;
int loChannel;
int upChannel;
}
}

20
numass-main/src/main/groovy/inr/numass/scripts/SimulatePileup.groovy
View File

@ -8,7 +8,7 @@ package inr.numass.scripts
import hep.dataforge.grind.Grind
import hep.dataforge.tables.DataPoint
import inr.numass.data.NMPoint
import inr.numass.data.NumassPointImpl
import inr.numass.data.RawNMPoint
import inr.numass.storage.NumassDataLoader
import inr.numass.utils.NMEventGeneratorWithPulser
@ -43,18 +43,18 @@ def data = NumassDataLoader.fromLocalDir(null, dataDir).getNMPoints()
//)
//Simulation process
Map<String, List<NMPoint>> res = [:]
Map<String, List<NumassPointImpl>> res = [:]
List<NMPoint> generated = new ArrayList<>();
List<NMPoint> registered = new ArrayList<>();
List<NMPoint> firstIteration = new ArrayList<>();
List<NMPoint> secondIteration = new ArrayList<>();
List<NMPoint> pileup = new ArrayList<>();
List<NumassPointImpl> generated = new ArrayList<>();
List<NumassPointImpl> registered = new ArrayList<>();
List<NumassPointImpl> firstIteration = new ArrayList<>();
List<NumassPointImpl> secondIteration = new ArrayList<>();
List<NumassPointImpl> pileup = new ArrayList<>();
lowerChannel = 400;
upperChannel = 1800;
PileUpSimulator buildSimulator(NMPoint point, double cr, NMPoint reference = null, boolean extrapolate = true, double scale = 1d) {
PileUpSimulator buildSimulator(NumassPointImpl point, double cr, NumassPointImpl reference = null, boolean extrapolate = true, double scale = 1d) {
def cfg = Grind.buildMeta(cr: cr) {
pulser(mean: 3450, sigma: 86.45, freq: 66.43)
}
@ -88,7 +88,7 @@ PileUpSimulator buildSimulator(NMPoint point, double cr, NMPoint reference = nul
return new PileUpSimulator(point.length * scale, rnd, generator).withUset(point.voltage).generate();
}
double adjustCountRate(PileUpSimulator simulator, NMPoint point) {
double adjustCountRate(PileUpSimulator simulator, NumassPointImpl point) {
double generatedInChannel = simulator.generated().getCountInWindow(lowerChannel, upperChannel);
double registeredInChannel = simulator.registered().getCountInWindow(lowerChannel, upperChannel);
return (generatedInChannel / registeredInChannel) * (point.getCountInWindow(lowerChannel, upperChannel) / point.getLength());
@ -100,7 +100,7 @@ data.forEach { point ->
PileUpSimulator simulator = buildSimulator(point, cr);
//second iteration to exclude pileup overlap
NMPoint pileupPoint = simulator.pileup();
NumassPointImpl pileupPoint = simulator.pileup();
firstIteration.add(simulator.registered());
//updating count rate

49
numass-main/src/main/groovy/inr/numass/scripts/TestPointAnalyzer.groovy Normal file
View File

@ -0,0 +1,49 @@
package inr.numass.scripts
import hep.dataforge.context.Context
import hep.dataforge.context.Global
import hep.dataforge.grind.GrindShell
import hep.dataforge.grind.helpers.PlotHelper
import hep.dataforge.plots.fx.FXPlotManager
import hep.dataforge.tables.MapPoint
import inr.numass.NumassPlugin
import inr.numass.data.PointAnalyzer
import inr.numass.data.RawNMPoint
import inr.numass.storage.NumassStorage
import inr.numass.storage.NumassStorageFactory
/**
* Created by darksnake on 27-Jun-17.
*/
Context ctx = Global.instance()
ctx.pluginManager().load(FXPlotManager)
ctx.pluginManager().load(NumassPlugin.class)
GrindShell shell = new GrindShell(ctx)
shell.eval {
PlotHelper plot = plots
File rootDir = new File("D:\\Work\\Numass\\data\\2017_05\\Fill_1")
NumassStorage storage = NumassStorageFactory.buildLocal(rootDir);
def hv = 15000;
def point = storage.provide("loader::set_2/rawPoint::$hv", RawNMPoint.class).get();
def t0 = (1..150).collect { 5.5e-6 + 2e-7 * it }
def plotPoints = t0.collect {
def result = PointAnalyzer.analyzePoint(point, it,500,3100)
MapPoint.fromMap("x.value": it, "y.value": result.cr, "y.err": result.crErr);
}
//def cr = t0.collect { PointAnalyzer.analyzePoint(point, it).cr }
plot.plot(plotPoints, ["name": hv])
plot.plot(title: "dead time", from: 5.5e-6, to: 2e-5) { point.cr * 1d / (1d - 6.55e-6 * point.cr) }
storage.close()
}

8
numass-main/src/main/groovy/inr/numass/scripts/Underflow.groovy
View File

@ -9,9 +9,9 @@ package inr.numass.scripts
import hep.dataforge.io.ColumnedDataWriter
import hep.dataforge.storage.commons.StorageUtils
import hep.dataforge.tables.Table
import inr.numass.data.NMPoint
import inr.numass.data.NumassData
import inr.numass.data.NumassDataUtils
import inr.numass.data.NumassPointImpl
import inr.numass.storage.NumassStorage
import inr.numass.storage.NumassStorageFactory
import inr.numass.utils.UnderflowCorrection
@ -23,7 +23,7 @@ File rootDir = new File("D:\\Work\\Numass\\data\\2017_05\\Fill_1")
NumassStorage storage = NumassStorageFactory.buildLocal(rootDir);
Collection<NMPoint> data = NumassDataUtils.joinSpectra(
Collection<NumassPointImpl> data = NumassDataUtils.joinSpectra(
StorageUtils.loaderStream(storage)
.filter { it.key.matches("set_.{1,3}") }
.map {
@ -55,8 +55,8 @@ data = NumassDataUtils.substractReferencePoint(data, 18600d);
// }
//}
def printPoint(Iterable<NMPoint> data, List<Double> us, int binning = 20, normalize = true) {
List<NMPoint> points = data.findAll { it.voltage in us }.sort { it.voltage }
def printPoint(Iterable<NumassPointImpl> data, List<Double> us, int binning = 20, normalize = true) {
List<NumassPointImpl> points = data.findAll { it.voltage in us }.sort { it.voltage }
Map spectra = points.first().getMap(binning, normalize).collectEntries { key, value ->
[key, [value]]

14
numass-main/src/main/java/inr/numass/NumassIO.java
View File

@ -20,8 +20,7 @@ import hep.dataforge.data.binary.Binary;
import hep.dataforge.io.BasicIOManager;
import hep.dataforge.meta.Meta;
import hep.dataforge.names.Name;
import inr.numass.data.NumassDataReader;
import inr.numass.data.NumassPawReader;
import inr.numass.data.LegacyDataReader;
import inr.numass.data.RawNMFile;
import org.apache.commons.io.FilenameUtils;
import org.apache.commons.io.output.TeeOutputStream;
@ -40,7 +39,7 @@ public class NumassIO extends BasicIOManager {
public static final String NUMASS_OUTPUT_CONTEXT_KEY = "numass.outputDir";
public static RawNMFile readAsDat(Binary source, Meta config) throws IOException {
return new NumassDataReader(source, config).read();
return new LegacyDataReader(source, config).read();
}
// private File getOutputDir() {
@ -53,18 +52,15 @@ public class NumassIO extends BasicIOManager {
//
// }
public static RawNMFile readAsPaw(Binary source, Meta config) throws IOException {
return new NumassPawReader().readPaw(source, config.getString(FileDataFactory.FILE_NAME_KEY));
}
// public static RawNMFile readAsPaw(Binary source, Meta config) throws IOException {
// return new NumassPawReader().readPaw(source, config.getString(FileDataFactory.FILE_NAME_KEY));
// }
public static RawNMFile getNumassData(Binary binary, Meta config) {
try {
RawNMFile dataFile;
String extension = FilenameUtils.getExtension(config.getString(FileDataFactory.FILE_NAME_KEY)).toLowerCase();
switch (extension) {
case "paw":
dataFile = readAsPaw(binary, config);
break;
case "dat":
dataFile = readAsDat(binary, config);
break;

2
numass-main/src/main/java/inr/numass/actions/DebunchAction.java
View File

@ -53,7 +53,7 @@ public class DebunchAction extends OneToOneAction<RawNMFile, RawNMFile> {
RawNMFile res = new RawNMFile(source.getName(), source.getHead());
source.getData().stream().map((point) -> {
double cr = point.selectChanels(lower, upper).getCR();
double cr = point.selectChanels(lower, upper).getCr();
if (cr < maxCR) {
DebunchReport report = new FrameAnalizer(rejectionprob, framelength, lower, upper).debunchPoint(point);

4
numass-main/src/main/java/inr/numass/actions/JoinNumassDataAction.java
View File

@ -4,9 +4,9 @@ import hep.dataforge.actions.ManyToOneAction;
import hep.dataforge.context.Context;
import hep.dataforge.description.TypedActionDef;
import hep.dataforge.meta.Laminate;
import inr.numass.data.NMPoint;
import inr.numass.data.NumassData;
import inr.numass.data.NumassPoint;
import inr.numass.data.NumassPointImpl;
import java.util.Collection;
import java.util.Map;
@ -29,7 +29,7 @@ public class JoinNumassDataAction extends ManyToOneAction<NumassData, NumassData
if (p1.getVoltage() != p2.getVoltage()) {
throw new RuntimeException("Can't sum points with different Uset");
}
return new NMPoint(
return new NumassPointImpl(
(p1.getVoltage() + p2.getVoltage()) / 2,
p1.getStartTime(),
p1.getLength() + p2.getLength(),

2
numass-main/src/main/java/inr/numass/actions/PrepareDataAction.java
View File

@ -204,7 +204,7 @@ public class PrepareDataAction extends OneToOneAction<NumassData, Table> {
double framelength = meta.getDouble("framelength", 1);
double maxCR = meta.getDouble("maxcr", 500d);
double cr = point.selectChanels(lower, upper).getCR();
double cr = point.selectChanels(lower, upper).getCr();
if (cr < maxCR) {
DebunchReport report = new FrameAnalizer(rejectionprob, framelength, lower, upper).debunchPoint(point);
return PointBuilders.readRawPoint(report.getPoint());

60
numass-main/src/main/java/inr/numass/data/NumassPawReader.java
View File

@ -1,60 +0,0 @@
/*
* Copyright 2015 Alexander Nozik.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package inr.numass.data;
import hep.dataforge.data.binary.Binary;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.InputStream;
import java.util.Locale;
import java.util.Scanner;
/**
*
* @author Darksnake
*/
public class NumassPawReader {
public RawNMFile readPaw(Binary file, String name) throws IOException{
Locale.setDefault(Locale.US);
return readPaw(file.getStream(), name);
}
public RawNMFile readPaw(String filePath) throws FileNotFoundException{
return readPaw(new FileInputStream(filePath), filePath);
}
private RawNMFile readPaw(InputStream stream, String fileName) {
Scanner s = new Scanner(stream);
RawNMFile result = new RawNMFile(fileName);
while (s.hasNext()) {
long eventNum = s.nextLong();
double time = s.nextDouble();
short chanel = s.nextShort();
short timeTotal = s.nextShort();
double U = s.nextDouble();
// NumassEvent event = new NumassEvent(chanel, time);
result.putEvent(U, chanel, time);
}
return result;
}
}

2
numass-main/src/main/java/inr/numass/debunch/FrameAnalizer.java
View File

@ -87,7 +87,7 @@ public class FrameAnalizer implements Debuncher {
}
private DebunchReport debunch(RawNMPoint point, double prob, double frameShift, double frameLength) {
double cr = point.selectChanels(lowerChanel, upperChanel).getCR();
double cr = point.selectChanels(lowerChanel, upperChanel).getCr();
return debunch(point, cr, prob, frameShift, frameLength);
}

2
numass-main/src/main/java/inr/numass/tasks/NumassPrepareTask.java
View File

@ -145,7 +145,7 @@ public class NumassPrepareTask extends AbstractTask<Table> {
// double framelength = meta.getDouble("framelength", 1);
// double maxCR = meta.getDouble("maxcr", 500d);
//
// double cr = point.selectChanels(lower, upper).getCR();
// double cr = point.selectChanels(lower, upper).getCr();
// if (cr < maxCR) {
// DebunchReport report = new FrameAnalizer(rejectionprob, framelength, lower, upper).debunchPoint(point);
// return new NMPoint(report.getPoint());

3
numass-server/src/main/java/inr/numass/server/TestServer.java
View File

@ -14,6 +14,7 @@ import hep.dataforge.storage.filestorage.FileStorageFactory;
import inr.numass.storage.NumassStorage;
import java.io.BufferedReader;
import java.io.File;
import java.io.InputStreamReader;
/**
@ -32,7 +33,7 @@ public class TestServer {
ServerManager serverManager = context.pluginManager().load(ServerManager.class);
String path = "D:/temp/test";
File path = new File("/D:/temp/test");
context.getLogger().info("Starting test numass storage servlet in '{}'", path);
NumassStorage storage = new NumassStorage(context, FileStorageFactory.buildStorageMeta(path, true, true));

4
numass-viewer/build.gradle
View File

@ -1,5 +1,5 @@
plugins{
id "org.jetbrains.kotlin.jvm" version '1.1.2-5'
id "org.jetbrains.kotlin.jvm" version '1.1.3'
id "application"
}
@ -27,7 +27,7 @@ dependencies {
compile 'com.jcraft:jsch:0.1.54'
compile 'org.controlsfx:controlsfx:8.40.12'
compile "no.tornado:tornadofx:1.7.5"
compile "no.tornado:tornadofx:1.7.8"
}
apply plugin: 'kotlin'