Numass server update

numass-main/build.gradle

@@ -1,9 +1,9 @@
-apply plugin: 'application'
+apply plugin: 'groovy'
 
-if (!hasProperty('mainClass')) {
+//if (!hasProperty('mainClass')) {
-    ext.mainClass = 'inr.numass.LaunchGrindShell'
+//    ext.mainClass = 'inr.numass.LaunchGrindShell'
-}
+//}
-mainClassName = mainClass
+//mainClassName = mainClass
 
 description = "Main numass project"
 
@@ -15,28 +15,35 @@ dependencies {
     compile "hep.dataforge:grind-terminal" //project(':dataforge-grind:grind-terminal')
 }
 
-task listActions(dependsOn: classes, type: JavaExec) {
+//task listActions(dependsOn: classes, type: JavaExec) {
-    main mainClass
+//    main "inr.numass.LaunchGrindShell"
-    args "-lc"
+//    args "-lc"
-    classpath = sourceSets.main.runtimeClasspath
+//    classpath = sourceSets.main.runtimeClasspath
-    description "print a list of available actions as via -lc command line parameter"
+//    description "print a list of available actions as via -lc command line parameter"
-    group "numass"
+//    group "numass"
-}
+//}
-
-task workspace(dependsOn: classes, type: JavaExec) {
-    main 'inr.numass.workspace.NumassGrindLauncher'
-    classpath = sourceSets.main.runtimeClasspath
-    args "-c \"D:\\Work\\Numass\\sterile2016\\workspace.groovy\" numass.fitsum sum_down".split()
-    description "Run workspace task"
-    group "numass"
-}
 
 task repl(dependsOn: classes, type: JavaExec) {
+    group "numass"
     main 'inr.numass.LaunchGrindShell'
     classpath = sourceSets.main.runtimeClasspath
     description "Start Grind repl"
     standardInput = System.in
     standardOutput = System.out
-    args["--config",]
+    if (project.hasProperty("cmd")) {
+        args = cmd.split().toList()
+    }
+}
+
+task simulate(dependsOn: classes, type: JavaExec) {
     group "numass"
+    main 'inr.numass.scripts.Simulate'
+    classpath = sourceSets.main.runtimeClasspath
+    description "Simulate spectrum"
+}
+
+task underflow(dependsOn: classes, type: JavaExec) {
+    group "numass"
+    main 'inr.numass.scripts.Underflow'
+    classpath = sourceSets.main.runtimeClasspath
 }

numass-main/src/main/groovy/inr/numass/scripts/Simulate.groovy

@@ -18,7 +18,10 @@ package inr.numass.scripts
 import hep.dataforge.context.Global
 import hep.dataforge.io.ColumnedDataWriter
 import hep.dataforge.meta.Meta
-import hep.dataforge.stat.fit.*
+import hep.dataforge.stat.fit.FitManager
+import hep.dataforge.stat.fit.FitStage
+import hep.dataforge.stat.fit.FitState
+import hep.dataforge.stat.fit.ParamSet
 import hep.dataforge.stat.models.XYModel
 import hep.dataforge.tables.ListTable
 import inr.numass.NumassPlugin
@@ -38,10 +41,9 @@ import static java.util.Locale.setDefault
  */
 
 setDefault(Locale.US);
-new MINUITPlugin().startGlobal();
 new NumassPlugin().startGlobal()
+FitManager fm = Global.instance().getFeature(FitManager)
 
-FitManager fm = new FitManager();
 
 SterileNeutrinoSpectrum sp = new SterileNeutrinoSpectrum(Global.instance(), Meta.empty());
 //beta.setCaching(false);
@@ -79,7 +81,7 @@ allPars.setParDomain("trap", 0d, Double.POSITIVE_INFINITY);
 //        ListTable config = OldDataReader.readConfig(configName);
 SpectrumGenerator generator = new SpectrumGenerator(model, allPars, 12316);
 
-ListTable data = generator.generateData(DataModelUtils.getUniformSpectrumConfiguration(5000d, 18500, 604800/100*100, 100));
+ListTable data = generator.generateData(DataModelUtils.getUniformSpectrumConfiguration(14000, 18500, 604800 / 100 * 100, 100));
 
 data = TritiumUtils.correctForDeadTime(data, new SpectrumDataAdapter(), 10e-9);
 //        data = data.filter("X", Value.of(15510.0), Value.of(18610.0));

numass-main/src/main/groovy/inr/numass/scripts/Underflow.groovy

@@ -14,15 +14,15 @@ import inr.numass.storage.NumassDataUtils
 import inr.numass.storage.NumassStorage
 import inr.numass.utils.UnderflowCorrection
 
-File rootDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_1")
+//File rootDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_1")
 //File rootDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_2_wide")
-//File rootDir = new File("D:\\Work\\Numass\\data\\2017_01\\Fill_2_wide")
+File rootDir = new File("D:\\Work\\Numass\\data\\2017_01\\Fill_2_wide")
 
 NumassStorage storage = NumassStorage.buildLocalNumassRoot(rootDir, true);
 
 Collection<NMPoint> data = NumassDataUtils.joinSpectra(
         StorageUtils.loaderStream(storage)
-                .filter { it.key.matches("set_.{2,3}") }
+                .filter { it.key.matches("set_.{1,3}") }
                 .map {
             println "loading ${it.key}"
             it.value
@@ -60,12 +60,10 @@ def printPoint(Iterable<NMPoint> data, List us, int binning = 20, normalize = tr
     };
 
     points.eachWithIndex { it, index ->
-        if (index > 0) {
             print "\t${it.uset}"
             it.getMapWithBinning(binning, normalize).each { k, v ->
                 spectra[k].add(v)
             }
-        }
     }
 
     println()
@@ -81,7 +79,8 @@ def printPoint(Iterable<NMPoint> data, List us, int binning = 20, normalize = tr
 
 println "\n# spectra\n"
 
-printPoint(data, [16200d, 16400d, 16800d, 17000d, 17200d, 17700d])
+//printPoint(data, [16200d, 16400d, 16800d, 17000d, 17200d, 17700d])
+printPoint(data, [14000d, 14500d, 15000d, 15500d, 16500d])
 
 println()
 

numass-main/src/main/java/inr/numass/NumassPlugin.java

@@ -43,7 +43,7 @@ import org.apache.commons.math3.util.FastMath;
  * @author Alexander Nozik
  */
 @PluginDef(group = "inr.numass", name = "numass",
-        dependsOn = {"hep.dataforge:actions", "hep.dataforge:math", "hep.dataforge:MINUIT"},
+        dependsOn = {"hep.dataforge:math", "hep.dataforge:MINUIT"},
         description = "Numass data analysis tools")
 public class NumassPlugin extends BasicPlugin {
 

numass-storage/numass-server/build.gradle

@@ -11,3 +11,12 @@ dependencies {
 //}
 
 
+task runServer(dependsOn: classes, type: JavaExec){
+    group "numass"
+    description "Run numass server in current directory"
+    main 'inr.numass.server.ServerRunner'
+    classpath = sourceSets.main.runtimeClasspath
+    workingDir "D:\\Temp\\test\\"
+    standardInput = System.in
+    standardOutput = System.out
+}

numass-storage/numass-server/src/main/java/inr/numass/server/NumassServer.java

@@ -82,6 +82,7 @@ public class NumassServer extends AbstractNetworkListener {
         int port = meta().getInt("ratpack.port", 8336);
         ratpack = RatpackServer.start((RatpackServerSpec server) -> server
                 .serverConfig((ServerConfigBuilder config) -> config
+//                        .baseDir(Paths.get(getClass().getResource("/ratpack/.ratpack").toURI()))
                         .findBaseDir()
                         .address(InetAddress.getLocalHost())
                         .port(port))

numass-storage/numass-server/src/main/java/inr/numass/server/NumassServerDaemon.java

@@ -15,102 +15,36 @@
  */
 package inr.numass.server;
 
-import hep.dataforge.io.MetaFileReader;
-import hep.dataforge.meta.Annotated;
-import hep.dataforge.meta.Meta;
-import hep.dataforge.storage.commons.StorageManager;
-import hep.dataforge.storage.filestorage.FileStorage;
 import org.apache.commons.daemon.Daemon;
 import org.apache.commons.daemon.DaemonContext;
-import org.slf4j.Logger;
+import org.apache.commons.daemon.DaemonInitException;
-import org.slf4j.LoggerFactory;
-
-import java.io.File;
 
 /**
  * A daemon wrapper for numass server
  *
  * @author darksnake
  */
-public class NumassServerDaemon implements Daemon, Annotated {
+public class NumassServerDaemon implements Daemon {
+    private ServerRunner server;
 
-    private final Logger logger = LoggerFactory.getLogger("NUMASS-SERVER");
-
-    public static final String SERVER_CONFIG_PATH = "numass-server.xml";
-    private static final String NUMASS_REPO_ELEMENT = "numass.repository";
-    private static final String LISTENER_ELEMENT = "listener";
-    private static final String NUMASS_REPO_PATH_PROPERTY = "numass.repository.path";
-
-    Meta serverConfig;
-    FileStorage root;
-    NumassServer listener;
 
     @Override
-    public void destroy() {
+    public void init(DaemonContext context) throws DaemonInitException, Exception {
-        if (root != null) {
+        server = new ServerRunner();
-            try {
-                root.close();
-            } catch (Exception ex) {
-                logger.error("Error while closing storage", ex);
-            }
-        }
-    }
-
-    @Override
-    public Meta meta() {
-        if (serverConfig != null) {
-            return serverConfig;
-        } else {
-            return Meta.buildEmpty("numass-server");
-        }
-    }
-
-    @Override
-    public void init(DaemonContext dc) throws Exception {
-        logger.info("Starting numass server daemon");
-        logger.info("Starting storage plugin");
-        new StorageManager().startGlobal();
-
-        File configFile = new File(SERVER_CONFIG_PATH);
-        if (configFile.exists()) {
-            logger.info("Trying to read server configuration from {}", SERVER_CONFIG_PATH);
-            serverConfig = MetaFileReader.read(configFile);
-        }
-
-        String repoPath = meta().getString(NUMASS_REPO_PATH_PROPERTY, "/home/numass-storage/");
-        Meta repoConfig = null;
-        if (meta().hasMeta(NUMASS_REPO_ELEMENT)) {
-            repoConfig = meta().getMeta(NUMASS_REPO_ELEMENT);
-        }
-        logger.info("Initializing file storage in {}", repoPath);
-        root = FileStorage.in(new File(repoPath), repoConfig);
-//        root.toggleMonitor(true);
     }
 
     @Override
     public void start() throws Exception {
-        logger.info("Starting numass server daemon");
+        server.start();
-        if (root != null) {
-            root.open();
-            Meta listenerConfig = null;
-            if (meta().hasMeta(LISTENER_ELEMENT)) {
-                listenerConfig = meta().getMeta(LISTENER_ELEMENT);
-            }
-
-            listener = new NumassServer(root, listenerConfig);
-            listener.open();
-            logger.info("Sucessfully started numass server");
-        } else {
-            logger.error("Root storage not initialized");
-        }
     }
 
     @Override
     public void stop() throws Exception {
-        logger.info("Stoping numass server daemon");
+        server.close();
-        if (listener != null) {
-            listener.close();
-        }
     }
 
+    @Override
+    public void destroy() {
+        server.close();
+    }
 }

numass-storage/numass-server/src/main/java/inr/numass/server/ServerRunner.java

@@ -0,0 +1,99 @@
+package inr.numass.server;
+
+import hep.dataforge.io.MetaFileReader;
+import hep.dataforge.meta.Meta;
+import hep.dataforge.meta.SimpleConfigurable;
+import hep.dataforge.storage.filestorage.FileStorage;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStreamReader;
+import java.text.ParseException;
+import java.util.Objects;
+
+/**
+ * Created by darksnake on 11-Apr-17.
+ */
+public class ServerRunner extends SimpleConfigurable implements AutoCloseable {
+    public static final String SERVER_CONFIG_PATH = "numass-server.xml";
+    private static final String NUMASS_REPO_ELEMENT = "numass.repository";
+    private static final String LISTENER_ELEMENT = "listener";
+    private static final String NUMASS_REPO_PATH_PROPERTY = "numass.repository.path";
+    private final Logger logger = LoggerFactory.getLogger("NUMASS-SERVER");
+    FileStorage root;
+    NumassServer listener;
+
+    public ServerRunner() throws IOException, ParseException {
+//        Global.instance().pluginManager().load(StorageManager.class);
+
+        File configFile = new File(SERVER_CONFIG_PATH);
+        if (configFile.exists()) {
+            logger.info("Trying to read server configuration from {}", SERVER_CONFIG_PATH);
+            configure(MetaFileReader.read(configFile));
+        }
+    }
+
+    public static void main(String[] args) {
+        try (ServerRunner r = new ServerRunner()) {
+            r.start();
+            BufferedReader reader = new BufferedReader(new InputStreamReader(System.in));
+            String in = null;
+            while (!Objects.equals(in, "exit")) {
+                in = reader.readLine();
+            }
+        } catch (Exception e) {
+            e.printStackTrace();
+        }
+    }
+
+    public ServerRunner start() throws Exception {
+        String repoPath = meta().getString(NUMASS_REPO_PATH_PROPERTY, ".");
+        Meta repoConfig = null;
+        if (meta().hasMeta(NUMASS_REPO_ELEMENT)) {
+            repoConfig = meta().getMeta(NUMASS_REPO_ELEMENT);
+        }
+        logger.info("Initializing file storage in {}", repoPath);
+        root = FileStorage.in(new File(repoPath), repoConfig);
+
+        logger.info("Starting numass server");
+        if (root != null) {
+            root.open();
+            Meta listenerConfig = null;
+            if (meta().hasMeta(LISTENER_ELEMENT)) {
+                listenerConfig = meta().getMeta(LISTENER_ELEMENT);
+            }
+
+            listener = new NumassServer(root, listenerConfig);
+            listener.open();
+            logger.info("Successfully started numass server");
+        } else {
+            logger.error("Root storage not initialized");
+        }
+
+        return this;
+    }
+
+    @Override
+    public void close() {
+        logger.info("Stopping numass server");
+        if (listener != null) {
+            try {
+                listener.close();
+            } catch (Exception e) {
+                logger.error("Failed to close listener", e);
+            }
+        }
+
+
+        if (root != null) {
+            try {
+                root.close();
+            } catch (Exception ex) {
+                logger.error("Error while closing storage", ex);
+            }
+        }
+    }
+}