working on numass viewer improvement
This commit is contained in:
darksnake
parent
1177bdfa6c
commit
92ff3b5215
@ -100,7 +100,7 @@ public class NumassRootHandler implements Handler {
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}
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private void renderLoader(Context ctx, StringBuilder b, Loader loader) {
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String href = "/storage?path=" + loader.getPath();
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String href = "/storage?path=" + loader.getFullPath();
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b.append(String.format("<p><a href=\"%s\">%s</a> (%s)</p>", href, loader.getName(), loader.getType()));
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}
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}
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@ -311,7 +311,7 @@ public class NumassDataLoader extends AbstractLoader implements ObjectLoader<Env
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public boolean isReversed() {
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//TODO replace by meta tag in later revisions
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return SetDirectionUtility.isReversed(getPath(), n -> {
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return SetDirectionUtility.isReversed(getFullPath(), n -> {
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List<Envelope> points = getPoints();
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if (getPoints().size() >= 2) {
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return readTime(points.get(0).meta()).isAfter(readTime(points.get(1).meta()));
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@ -59,8 +59,8 @@ public class MainViewerController implements Initializable {
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@FXML
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private Button loadDirectoryButton;
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private MspViewController mspController;
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@FXML
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private AnchorPane mspPlotPane;
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// @FXML
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// private AnchorPane mspContainer;
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//main pane views
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@FXML
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private AnchorPane numassLoaderViewContainer;
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@ -181,7 +181,7 @@ public class MainViewerController implements Initializable {
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callback.setProgressToMax();
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});
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mspController = new MspViewController(getContext(), mspPlotPane);
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mspController = new MspViewController(getContext(), mspTab);
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mspController.fillMspData(root);
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pressuresTab.getContent().setVisible(false);
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@ -21,7 +21,6 @@ package inr.numass.viewer;
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* and open the template in the editor.
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*/
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import hep.dataforge.computation.ProgressCallback;
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import hep.dataforge.context.Context;
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import hep.dataforge.names.Name;
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import hep.dataforge.plots.PlotUtils;
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@ -36,11 +35,17 @@ import hep.dataforge.tables.DataPoint;
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import hep.dataforge.tables.MapPoint;
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import hep.dataforge.values.Value;
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import javafx.application.Platform;
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import javafx.fxml.FXML;
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import javafx.fxml.FXMLLoader;
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import javafx.scene.control.Tab;
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import javafx.scene.layout.AnchorPane;
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import org.slf4j.LoggerFactory;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.stream.Collectors;
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import java.util.stream.Stream;
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import java.util.stream.StreamSupport;
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/**
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@ -50,27 +55,27 @@ import java.util.stream.StreamSupport;
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*/
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public class MspViewController {
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private final AnchorPane mspPlotPane;
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private final Context context;
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@FXML
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private AnchorPane mspPlotPane;
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public MspViewController(Context context, AnchorPane mspPlotPane) {
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public MspViewController(Context context, Tab mspTab) {
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this.context = context;
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this.mspPlotPane = mspPlotPane;
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FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/MspView.fxml"));
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loader.setController(this);
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try {
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loader.load();
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} catch (IOException e) {
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throw new Error(e);
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}
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mspTab.setContent(loader.getRoot());
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// this.mspPlotPane = mspContainer;
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}
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/**
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* update detector pane with new data
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*/
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private void updateMspPane(DynamicPlottableSet mspData) {
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// MetaBuilder plotMeta = new MetaBuilder("plot")
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// .setNode(new MetaBuilder("xAxis")
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// .setValue("axisTitle", "time")
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// .setValue("type", "time"))
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// .setNode(new MetaBuilder("yAxis")
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// .setValue("axisTitle", "partial pressure")
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// .setValue("axisUnits", "mbar")
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// .setValue("type", "log")
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// );
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JFreeChartFrame frame = new JFreeChartFrame();
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PlotUtils.setYAxis(frame, "partial pressure", "mbar", "log");
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frame.getConfig().setValue("yAxis.range.lower", 1e-10);
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@ -81,50 +86,28 @@ public class MspViewController {
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.sorted((DynamicPlottable o1, DynamicPlottable o2)
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-> Integer.valueOf(o1.getName()).compareTo(Integer.valueOf(o2.getName()))).forEach((pl) -> frame.add(pl));
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Platform.runLater(() -> {
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mspPlotPane.getChildren().clear();
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PlotContainer container = PlotContainer.anchorTo(mspPlotPane);
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container.setPlot(frame);
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});
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}
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public void fillMspData(Storage rootStorage) {
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if (rootStorage != null) {
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context.taskManager().submit("viewer.msp.fill", (ProgressCallback callback) -> {
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// callback.updateTitle("Fill msp data (" + rootStorage.getName() + ")");
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callback.updateTitle("Load msp data (" + rootStorage.getName() + ")");
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List<DataPoint> mspData = new ArrayList<>();
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StorageUtils.loaderStream(rootStorage)
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.filter(pair -> pair.getValue() instanceof PointLoader)
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public List<PointLoader> listMspLoaders(Storage rootStorage) {
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return StorageUtils.loaderStream(rootStorage)
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.filter(pair -> Name.of(pair.getKey()).getLast().toString().startsWith("msp"))
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.map(pair -> pair.getValue())
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.filter(loader -> PointLoader.POINT_LOADER_TYPE.equals(loader.getType()))
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.forEach(loader -> {
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try {
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PointLoader mspLoader = (PointLoader) loader;
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mspLoader.open();
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callback.updateMessage("Loading mass spectrometer data from " + mspLoader.getName());
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DataPoint last = null;
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for (DataPoint dp : mspLoader) {
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mspData.add(dp);
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last = dp;
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.map(loader -> (PointLoader) loader)
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.collect(Collectors.toList());
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}
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if (last != null) {
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mspData.add(terminatorPoint(last));
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}
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} catch (Exception ex) {
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LoggerFactory.getLogger(getClass()).error("Can't read msp loader data", ex);
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}
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});
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callback.updateMessage("Loading msp data finished");
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// return mspData;
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// List<DataPoint> mspData = (List<DataPoint>) loadProcess.getTask().get();
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if (!mspData.isEmpty()) {
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public void plotData(List<PointLoader> loaders) {
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DynamicPlottableSet plottables = new DynamicPlottableSet();
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for (DataPoint point : mspData) {
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loaders.stream()
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.flatMap(loader -> getLoaderData(loader))
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.distinct()
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.forEach(point -> {
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for (String name : point.names()) {
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if (!name.equals("timestamp")) {
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if (!plottables.hasPlottable(name)) {
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@ -134,13 +117,91 @@ public class MspViewController {
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}
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plottables.put(point);
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}
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);
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updateMspPane(plottables);
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}
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});
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private Stream<DataPoint> getLoaderData(PointLoader loader) {
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try {
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loader.open();
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List<DataPoint> points = new ArrayList<>();
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// callback.updateMessage("Loading mass spectrometer data from " + loader.getName());
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DataPoint last = null;
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for (DataPoint dp : loader) {
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points.add(dp);
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last = dp;
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}
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if (last != null) {
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points.add(terminatorPoint(last));
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}
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return points.stream();
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} catch (Exception ex) {
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LoggerFactory.getLogger(getClass()).error("Can't read msp loader data", ex);
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return Stream.empty();
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}
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}
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public void fillMspData(Storage rootStorage) {
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plotData(listMspLoaders(rootStorage));
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}
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// public void fillMspData(Storage rootStorage) {
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// if (rootStorage != null) {
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// context.taskManager().submit("viewer.msp.fill", (ProgressCallback callback) -> {
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// // callback.updateTitle("Fill msp data (" + rootStorage.getName() + ")");
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//
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// callback.updateTitle("Load msp data (" + rootStorage.getName() + ")");
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//
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// List<DataPoint> mspData = new ArrayList<>();
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//
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// StorageUtils.loaderStream(rootStorage)
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// .filter(pair -> pair.getValue() instanceof PointLoader)
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// .filter(pair -> Name.of(pair.getKey()).getLast().toString().startsWith("msp"))
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// .map(pair -> pair.getValue())
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// .filter(loader -> PointLoader.POINT_LOADER_TYPE.equals(loader.getType()))
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// .forEach(loader -> {
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// try {
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// PointLoader mspLoader = (PointLoader) loader;
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// mspLoader.open();
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// callback.updateMessage("Loading mass spectrometer data from " + mspLoader.getName());
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// DataPoint last = null;
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// for (DataPoint dp : mspLoader) {
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// mspData.add(dp);
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// last = dp;
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// }
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// if (last != null) {
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// mspData.add(terminatorPoint(last));
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// }
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// } catch (Exception ex) {
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// LoggerFactory.getLogger(getClass()).error("Can't read msp loader data", ex);
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// }
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// });
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// callback.updateMessage("Loading msp data finished");
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//// return mspData;
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//// List<DataPoint> mspData = (List<DataPoint>) loadProcess.getTask().get();
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//
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// if (!mspData.isEmpty()) {
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// DynamicPlottableSet plottables = new DynamicPlottableSet();
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//
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// for (DataPoint point : mspData) {
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// for (String name : point.names()) {
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// if (!name.equals("timestamp")) {
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// if (!plottables.hasPlottable(name)) {
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// plottables.addPlottable(new DynamicPlottable(name, name));
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// }
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// }
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// }
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// plottables.put(point);
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// }
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//
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// updateMspPane(plottables);
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// }
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// });
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// }
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// }
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/**
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* Create a null value point to terminate msp series
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*
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@ -73,7 +73,7 @@ limitations under the License.
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</Tab>
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<Tab fx:id="mspTab" closable="false" text="Mass-spectrum">
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<content>
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<AnchorPane fx:id="mspPlotPane" prefHeight="200.0" prefWidth="200.0" />
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<AnchorPane fx:id="mspContainer" prefHeight="200.0" prefWidth="200.0"/>
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</content>
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</Tab>
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<Tab fx:id="pressuresTab" closable="false" text="Pressures">
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@ -16,13 +16,10 @@ See the License for the specific language governing permissions and
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limitations under the License.
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-->
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<?import java.lang.*?>
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<?import java.util.*?>
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<?import javafx.scene.*?>
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<?import javafx.scene.control.*?>
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<?import javafx.scene.layout.*?>
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<AnchorPane id="AnchorPane" minHeight="0.0" minWidth="0.0" prefHeight="180.0" prefWidth="200.0" xmlns="http://javafx.com/javafx/8.0.40" xmlns:fx="http://javafx.com/fxml/1" fx:controller="inr.numass.viewer.MspViewController">
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<AnchorPane xmlns:fx="http://javafx.com/fxml/1" id="AnchorPane" minHeight="0.0" minWidth="0.0" prefHeight="180.0"
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prefWidth="200.0" xmlns="http://javafx.com/javafx/8.0.76-ea"
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fx:controller="inr.numass.viewer.MspViewController">
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<children>
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<BorderPane layoutX="401.0" layoutY="270.0" prefHeight="200.0" prefWidth="200.0" AnchorPane.bottomAnchor="0.0" AnchorPane.leftAnchor="0.0" AnchorPane.rightAnchor="0.0" AnchorPane.topAnchor="0.0">
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<center>
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