[no commit message]

numass-main/src/main/groovy/inr/numass/scripts/SystTransmission.groovy

@@ -54,7 +54,8 @@ new MINUITPlugin().startGlobal();
 FitManager fm = new FitManager();
 
 ResolutionFunction resolution = new ResolutionFunction(8.3e-5);
-resolution.setTailFunction(ResolutionFunction.getRealTail());
+//resolution.setTailFunction(ResolutionFunction.getRealTail());
+resolution.setTailFunction(ResolutionFunction.getAngledTail(0.00325));
 ModularTritiumSpectrum beta = new ModularTritiumSpectrum(resolution, 18395d, 18580d, null);
 beta.setCaching(false);
 
@@ -64,9 +65,9 @@ XYModel model = new XYModel("tritium", spectrum, new SpectrumDataAdapter());
 ParamSet allPars = new ParamSet();
 
 
-allPars.setPar("N", 6e7, 1e5, 0, Double.POSITIVE_INFINITY);
+allPars.setPar("N", 6e9, 1e5, 0, Double.POSITIVE_INFINITY);
 
-allPars.setPar("bkg", 2, 0.1 );
+allPars.setPar("bkg", 0.002, 0.005 );
 
 allPars.setPar("E0", 18575.0, 0.1 );
 
@@ -85,18 +86,18 @@ allPars.setPar("trap", 1, 0.01, 0d, Double.POSITIVE_INFINITY);
 int seed = 12316
 SpectrumGenerator generator = new SpectrumGenerator(model, allPars, seed);
 
-def config = DataModelUtils.getUniformSpectrumConfiguration(18400d, 18580, 1e7, 60)
+def config = DataModelUtils.getUniformSpectrumConfiguration(18530d, 18580, 1e7, 60)
 //def config = DataModelUtils.getSpectrumConfigurationFromResource("/data/run23.cfg")
 
 ListPointSet data = generator.generateExactData(config);
 
 FitState state = new FitState(data, model, allPars);
 
-println("Simulating data with real tail. Seed = ${seed}")
+println("Simulating data with real tail")
 
 println("Fitting data with real parameters")
 
-FitState res = fm.runTask(state, "QOW", FitTask.TASK_RUN, "N", "bkg","E0", "mnu2");
+FitState res = fm.runTask(state, "QOW", FitTask.TASK_RUN, "N", "bkg", "E0", "mnu2");
 res.print(out());
 
 def mnu2 = res.getParameters().getValue("mnu2");
@@ -104,7 +105,7 @@ def mnu2 = res.getParameters().getValue("mnu2");
 println("Setting constant tail and fitting")
 resolution.setTailFunction(ResolutionFunction.getConstantTail());
 
-res = fm.runTask(state, "QOW", FitTask.TASK_RUN, "N", "bkg","E0", "mnu2");
+res = fm.runTask(state, "QOW", FitTask.TASK_RUN, "N", "bkg","E0","mnu2");
 res.print(out());
 
 def diff = res.getParameters().getValue("mnu2") - mnu2;

numass-main/src/main/java/hep/dataforge/plotfit/PlotFitResultAction.java

@@ -25,6 +25,7 @@ import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.description.ValueDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import hep.dataforge.plots.PlotsPlugin;
 import hep.dataforge.plots.XYPlotFrame;
@@ -42,12 +43,8 @@ import hep.dataforge.points.PointSet;
 @ValueDef(name = "plotTitle", def = "", info = "The title of the plot.")
 public class PlotFitResultAction extends OneToOneAction<FitState, FitState> {
 
-    public PlotFitResultAction(Context context, Meta annotation) {
-        super(context, annotation);
-    }
-
     @Override
-    protected FitState execute(Logable log, String name, Meta metaData, FitState input) {
+    protected FitState execute(Context context,Logable log, String name, Laminate metaData, FitState input) {
 
         PointSet data = input.getDataSet();
         if (!(input.getModel() instanceof XYModel)) {
@@ -68,7 +65,7 @@ public class PlotFitResultAction extends OneToOneAction<FitState, FitState> {
         UnivariateFunction function = (double x) -> model.getSpectrum().value(x, input.getParameters());
 
         XYPlotFrame frame = (XYPlotFrame) PlotsPlugin
-                .buildFrom(getContext()).buildPlotFrame(getName(), name,
+                .buildFrom(context).buildPlotFrame(getName(), name,
                 metaData.getNode("plot", null));
         //JFreeChartFrame.drawFrame(reader.getString("plotTitle", "Fit result plot for "+input.getName()), null);
 

numass-main/src/main/java/inr/numass/Main.java

@@ -15,7 +15,7 @@
  */
 package inr.numass;
 
-import hep.dataforge.actions.RunManager;
+import hep.dataforge.actions.ActionUtils;
 import hep.dataforge.context.Context;
 import static hep.dataforge.context.GlobalContext.out;
 import hep.dataforge.data.DataNode;
@@ -42,6 +42,13 @@ import org.apache.commons.cli.ParseException;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
+import static java.util.Locale.setDefault;
 
 /**
  *
@@ -107,7 +114,7 @@ public class Main {
 
             applyCLItoContext(line, context);
 
-            return RunManager.executeAction(context, config);
+            return ActionUtils.runConfig(context, config);
         } else {
             Workbench.main(args);
             return null;

numass-main/src/main/java/inr/numass/actions/AdjustErrorsAction.java

@@ -12,6 +12,7 @@ import hep.dataforge.points.ListPointSet;
 import hep.dataforge.points.MapPoint;
 import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import java.util.ArrayList;
 import java.util.List;
@@ -25,12 +26,8 @@ import hep.dataforge.points.PointSet;
 @TypedActionDef(name = "adjustErrors", inputType = PointSet.class, outputType = PointSet.class)
 public class AdjustErrorsAction extends OneToOneAction<PointSet, PointSet> {
 
-    public AdjustErrorsAction(Context context, Meta annotation) {
-        super(context, annotation);
-    }
-
     @Override
-    protected PointSet execute(Logable log, String name,Meta meta, PointSet input) {
+    protected PointSet execute(Context context, Logable log, String name, Laminate meta, PointSet input) {
         List<DataPoint> points = new ArrayList<>();
         for (DataPoint dp : input) {
             points.add(evalPoint(meta, dp));

numass-main/src/main/java/inr/numass/actions/DebunchAction.java

@@ -21,7 +21,7 @@ import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.description.ValueDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.log.Logable;
-import hep.dataforge.meta.Meta;
+import hep.dataforge.meta.Laminate;
 import inr.numass.data.RawNMFile;
 import inr.numass.data.RawNMPoint;
 import inr.numass.debunch.DebunchReport;
@@ -40,19 +40,15 @@ import java.io.PrintWriter;
 @ValueDef(name = "maxcr", type = "NUMBER", def = "100", info = "Maximum count rate for debunching")
 public class DebunchAction extends OneToOneAction<RawNMFile, RawNMFile> {
 
-    public DebunchAction(Context context, Meta an) {
-        super(context, an);
-    }
-
     @Override
-    protected RawNMFile execute(Logable log, String name, Meta reader, RawNMFile source) throws ContentException {
+    protected RawNMFile execute(Context context, Logable log, String name, Laminate meta, RawNMFile source) throws ContentException {
         log.log("File {} started", source.getName());
 
-        int upper = source.meta().getInt("upperchanel", this.meta().getInt("upperchanel", RawNMPoint.MAX_CHANEL));
+        int upper = meta.getInt("upperchanel", RawNMPoint.MAX_CHANEL);
-        int lower = source.meta().getInt("lowerchanel", this.meta().getInt("lowerchanel", 0));
+        int lower = meta.getInt("lowerchanel", 0);
-        double rejectionprob = source.meta().getDouble("rejectprob", this.meta().getDouble("rejectprob", 1e-5));
+        double rejectionprob = meta.getDouble("rejectprob", 1e-5);
-        double framelength = source.meta().getDouble("framelength", this.meta().getDouble("framelength", 5));
+        double framelength = meta.getDouble("framelength", 5);
-        double maxCR = source.meta().getDouble("maxcr", this.meta().getDouble("maxcr", 100d));
+        double maxCR = meta.getDouble("maxcr", 100d);
 
         RawNMFile res = new RawNMFile(source.getName());
         res.setHead(source.getHead());
@@ -71,7 +67,7 @@ public class DebunchAction extends OneToOneAction<RawNMFile, RawNMFile> {
         });
         log.log("File {} completed", source.getName());
 
-        log.getLog().print(new PrintWriter(buildActionOutput(name)));
+        log.getLog().print(new PrintWriter(buildActionOutput(context, name)));
 
 //        res.configure(source.meta());
         return res;

numass-main/src/main/java/inr/numass/actions/FindBorderAction.java

@@ -21,6 +21,7 @@ import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.ColumnedDataWriter;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import inr.numass.data.NMFile;
 import inr.numass.data.NMPoint;
@@ -33,17 +34,13 @@ import java.io.OutputStream;
 @TypedActionDef(name = "findBorder", inputType = NMFile.class, outputType = NMFile.class)
 public class FindBorderAction extends OneToOneAction<NMFile, NMFile> {
 
-    public FindBorderAction(Context context, Meta an) {
-        super(context, an);
-    }
-
     @Override
-    protected NMFile execute(Logable log, String name, Meta reader, NMFile source) throws ContentException {
+    protected NMFile execute(Context context, Logable log, String name, Laminate meta, NMFile source) throws ContentException {
         log.log("File {} started", source.getName());
 
-        int upperBorder = meta().getInt("upper", 4096);
+        int upperBorder = meta.getInt("upper", 4096);
-        int lowerBorder = meta().getInt("lower", 0);
+        int lowerBorder = meta.getInt("lower", 0);
-        double substractReference = meta().getDouble("reference", 0);
+        double substractReference = meta.getDouble("reference", 0);
 
         NMPoint referencePoint = null;
         if (substractReference > 0) {
@@ -55,7 +52,7 @@ public class FindBorderAction extends OneToOneAction<NMFile, NMFile> {
 
         BorderData bData = new BorderData(source, upperBorder, lowerBorder, referencePoint);
 
-        OutputStream stream = buildActionOutput(name);
+        OutputStream stream = buildActionOutput(context, name);
 
         ColumnedDataWriter.writeDataSet(stream, bData, String.format("%s : lower = %d upper = %d", source.getName(), lowerBorder, upperBorder));
 

numass-main/src/main/java/inr/numass/actions/MergeDataAction.java

@@ -35,7 +35,6 @@ import java.util.Collection;
 import java.util.LinkedHashMap;
 import java.util.List;
 import java.util.Map;
-import java.util.stream.Collectors;
 
 /**
  *
@@ -48,17 +47,13 @@ public class MergeDataAction extends ManyToOneAction<PointSet, PointSet> {
     public static final String MERGE_NAME = "mergeName";
     public static String[] parnames = {"Uset", "Uread", "Length", "Total", "Window", "Corrected", "CR", "CRerr"};
 
-    public MergeDataAction(Context context, Meta an) {
-        super(context, an);
-    }
-
     @Override
     @SuppressWarnings("unchecked")
-    protected List<DataNode<PointSet>> buildGroups(DataNode input) {
+    protected List<DataNode<PointSet>> buildGroups(Context context, DataNode input, Meta actionMeta) {
-        Meta meta = inputMeta(input.meta());
+        Meta meta = inputMeta(context, input.meta(), actionMeta);
         List<DataNode<PointSet>> groups;
         if (meta.hasValue("grouping.byValue")) {
-            groups = super.buildGroups(input);
+            groups = super.buildGroups(context, input, actionMeta);
         } else {
             groups = GroupBuilder.byValue(MERGE_NAME, meta.getString(MERGE_NAME, "merge")).group(input);
         }
@@ -66,19 +61,14 @@ public class MergeDataAction extends ManyToOneAction<PointSet, PointSet> {
     }
 
     @Override
-    protected PointSet execute(Logable log, DataNode<PointSet> input) {
+    protected PointSet execute(Context context, Logable log, String nodeName, Map<String, PointSet> data, Meta meta) {
-        return mergeOne(log, input);
+        PointSet res = mergeDataSets(nodeName, data.values());
-    }
-
-    private PointSet mergeOne(Logable log, DataNode<PointSet> input) {
-        List<PointSet> data = input.stream().<PointSet>map(item -> item.getValue().get()).collect(Collectors.toList());
-        PointSet res = mergeDataSets(input.getName(), data);
         return res.sort("Uset", true);
     }
 
     @Override
-    protected void afterGroup(Logable log, String groupName, Meta outputMeta, PointSet output) {
+    protected void afterGroup(Context context, Logable log, String groupName, Meta outputMeta, PointSet output) {
-        OutputStream stream = buildActionOutput(groupName);
+        OutputStream stream = buildActionOutput(context, groupName);
         ColumnedDataWriter.writeDataSet(stream, output, outputMeta.toString());
     }
 
@@ -96,7 +86,7 @@ public class MergeDataAction extends ManyToOneAction<PointSet, PointSet> {
                     } else {
                         return newPath;
                     }
-        });
+                });
 
         MetaBuilder builder = super.outputMeta(input);
         /*

numass-main/src/main/java/inr/numass/actions/MonitorCorrectAction.java

@@ -15,7 +15,6 @@
  */
 package inr.numass.actions;
 
-import hep.dataforge.actions.ActionResult;
 import hep.dataforge.actions.OneToOneAction;
 import hep.dataforge.context.Context;
 import hep.dataforge.points.DataPoint;
@@ -26,6 +25,7 @@ import hep.dataforge.description.ValueDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.ColumnedDataWriter;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import hep.dataforge.values.Value;
 import java.io.OutputStream;
@@ -51,15 +51,12 @@ public class MonitorCorrectAction extends OneToOneAction<PointSet, PointSet> {
     private static final String[] monitorNames = {"Timestamp", "Total", "CR", "CRerr"};
 
     CopyOnWriteArrayList<DataPoint> monitorPoints = new CopyOnWriteArrayList<>();
-
+    //FIXME remove from state
-    public MonitorCorrectAction(Context context, Meta an) {
-        super(context, an);
-    }
 
     @Override
-    protected PointSet execute(Logable log, String name, Meta reader, PointSet sourceData) throws ContentException {
+    protected PointSet execute(Context context, Logable log, String name, Laminate meta, PointSet sourceData) throws ContentException {
 
-        double monitor = reader.getDouble("monitorPoint", Double.NaN);
+        double monitor = meta.getDouble("monitorPoint", Double.NaN);
 
         TreeMap<LocalDateTime, DataPoint> index = getMonitorIndex(monitor, sourceData);
         if (index.isEmpty()) {
@@ -116,7 +113,7 @@ public class MonitorCorrectAction extends OneToOneAction<PointSet, PointSet> {
                 point.putValue("Corrected", Value.of(dp.getValue("Corrected").doubleValue() / corrFactor));
                 point.putValue("CRerr", Value.of(err));
             }
-            if (meta().getBoolean("calculateRelative", false)) {
+            if (meta.getBoolean("calculateRelative", false)) {
                 point.putValue("relCR", point.getValue("CR").doubleValue() / norm);
                 point.putValue("relCRerr", point.getValue("CRerr").doubleValue() / norm);
             }
@@ -133,7 +130,7 @@ public class MonitorCorrectAction extends OneToOneAction<PointSet, PointSet> {
 //        }
         PointSet data = new ListPointSet(dataList);
 
-        OutputStream stream = buildActionOutput(name);
+        OutputStream stream = buildActionOutput(context, name);
 
         ColumnedDataWriter.writeDataSet(stream, data, head);
 
@@ -141,14 +138,14 @@ public class MonitorCorrectAction extends OneToOneAction<PointSet, PointSet> {
     }
 
     @Override
-    protected void afterAction(String name, PointSet res) {
+    protected void afterAction(Context context, String name, PointSet res, Laminate meta) {
-        printMonitorData();
+        printMonitorData(context, meta);
-        super.afterAction(name, res); //To change body of generated methods, choose Tools | Templates.
+        super.afterAction(context, name, res, meta);
     }
 
-    private void printMonitorData() {
+    private void printMonitorData(Context context, Meta meta) {
-        String monitorFileName = meta().getString("monitorFile", "monitor");
+        String monitorFileName = meta.getString("monitorFile", "monitor");
-        OutputStream stream = buildActionOutput(monitorFileName);
+        OutputStream stream = buildActionOutput(context, monitorFileName);
         ListPointSet data = new ListPointSet(monitorPoints);
         ColumnedDataWriter.writeDataSet(stream, data.sort("Timestamp", true), "Monitor points", monitorNames);
     }

numass-main/src/main/java/inr/numass/actions/PrepareDataAction.java

@@ -27,6 +27,7 @@ import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.ColumnedDataWriter;
 import hep.dataforge.io.XMLMetaWriter;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import inr.numass.data.NMFile;
 import inr.numass.data.NMPoint;
@@ -50,24 +51,20 @@ public class PrepareDataAction extends OneToOneAction<NMFile, PointSet> {
 
     public static String[] parnames = {"Uset", "Uread", "Length", "Total", "Window", "Corrected", "CR", "CRerr", "Timestamp"};
 
-    public PrepareDataAction(Context context, Meta an) {
+    private int getLowerBorder(Meta meta, double Uset) throws ContentException {
-        super(context, an);
+        double b = meta.getDouble("lowerWindow", 0);
-    }
+        double a = meta.getDouble("lowerWindowSlope", 0);
-
-    private int getLowerBorder(Meta source, double Uset) throws ContentException {
-        double b = source.getDouble("lowerWindow", this.meta().getDouble("lowerWindow", 0));
-        double a = source.getDouble("lowerWindowSlope", this.meta().getDouble("lowerWindowSlope", 0));
 
         return (int) (b + Uset * a);
     }
 
     @Override
-    protected ListPointSet execute(Logable log, String name, Meta reader, NMFile dataFile) {
+    protected ListPointSet execute(Context context, Logable log, String name, Laminate meta, NMFile dataFile) {
 //        log.logString("File %s started", dataFile.getName());
 
-        int upper = dataFile.meta().getInt("upperWindow", this.meta().getInt("upperWindow", RawNMPoint.MAX_CHANEL - 1));
+        int upper = meta.getInt("upperWindow", RawNMPoint.MAX_CHANEL - 1);
 
-        double deadTime = dataFile.meta().getDouble("deadTime", this.meta().getDouble("deadTime", 0));
+        double deadTime = meta.getDouble("deadTime", 0);
 //        double bkg = source.meta().getDouble("background", this.meta().getDouble("background", 0));
 
         List<DataPoint> dataList = new ArrayList<>();
@@ -77,7 +74,7 @@ public class PrepareDataAction extends OneToOneAction<NMFile, PointSet> {
             double Uset = point.getUset();
             double Uread = point.getUread();
             double time = point.getLength();
-            int a = getLowerBorder(dataFile.meta(), Uset);
+            int a = getLowerBorder(meta, Uset);
             int b = Math.min(upper, RawNMPoint.MAX_CHANEL);
 
 //            analyzer.setMonitorCorrector(corrector);
@@ -110,11 +107,11 @@ public class PrepareDataAction extends OneToOneAction<NMFile, PointSet> {
         } else {
             head = dataFile.getName();
         }
-        head = head + "\n" + new XMLMetaWriter().writeString(meta(), null) + "\n";
+        head = head + "\n" + new XMLMetaWriter().writeString(meta, null) + "\n";
 
         ListPointSet data = new ListPointSet(dataList, format);
 
-        OutputStream stream = buildActionOutput(name);
+        OutputStream stream = buildActionOutput(context, name);
 
         ColumnedDataWriter.writeDataSet(stream, data, head);
 //        log.logString("File %s completed", dataFile.getName());

numass-main/src/main/java/inr/numass/actions/ReadNumassDataAction.java

@@ -22,7 +22,7 @@ import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.description.ValueDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.log.Logable;
-import hep.dataforge.meta.Meta;
+import hep.dataforge.meta.Laminate;
 import static inr.numass.NumassIO.getNumassData;
 import inr.numass.data.NMFile;
 import inr.numass.data.RawNMFile;
@@ -41,21 +41,20 @@ import java.io.File;
 @NodeDef(name = "debunch", target = "class::inr.numass.actions.DebunchAction", info = "If given, governs debunching")
 public class ReadNumassDataAction extends OneToOneAction<File, NMFile> {
 
-    public ReadNumassDataAction(Context context, Meta an) {
-        super(context, an);
-    }
-
     @Override
-    protected NMFile execute(Logable log, String name, Meta reader, File source) throws ContentException {
+    protected NMFile execute(Context context, Logable log, String name, Laminate meta, File source) throws ContentException {
 //        log.logString("File '%s' started", source.getName());
-        RawNMFile raw = getNumassData(source, meta());
+        RawNMFile raw = getNumassData(source, meta);
-        if (meta().getBoolean("paw", false)) {
+        if (meta.getBoolean("paw", false)) {
-            raw.generatePAW(buildActionOutput(name + ".paw"));
+            raw.generatePAW(buildActionOutput(context, name + ".paw"));
         }
 
-        if (meta().hasNode("debunch")) {
+        if (meta.getNodeNames(false).contains("debunch")) {
-            DebunchAction debunch = new DebunchAction(getContext(), meta().getNode("debunch"));
+            DebunchAction debunch = new DebunchAction();
-            raw = debunch.execute(log, name, null, raw);
+            Laminate laminate = new Laminate(meta.getNode("debunch"))
+                    .setValueContext(context)
+                    .setDescriptor(debunch.getDescriptor());
+            raw = debunch.execute(context, log, name, laminate, raw);
         }
 
         NMFile result = new NMFile(raw);

numass-main/src/main/java/inr/numass/actions/ShowLossSpectrumAction.java

@@ -33,6 +33,7 @@ import hep.dataforge.maths.GridCalculator;
 import hep.dataforge.maths.NamedDoubleSet;
 import hep.dataforge.maths.NamedMatrix;
 import hep.dataforge.maths.integration.UnivariateIntegrator;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import hep.dataforge.meta.MetaBuilder;
 import hep.dataforge.plots.PlotsPlugin;
@@ -65,12 +66,8 @@ public class ShowLossSpectrumAction extends OneToOneAction<FitState, FitState> {
 
     private static final String[] names = {"X", "exPos", "ionPos", "exW", "ionW", "exIonRatio"};
 
-    public ShowLossSpectrumAction(Context context, Meta annotation) {
-        super(context, annotation);
-    }
-
     @Override
-    protected FitState execute(Logable log, String name, Meta reader, FitState input) {
+    protected FitState execute(Context context, Logable log, String name, Laminate meta, FitState input) {
         ParamSet pars = input.getParameters();
         if (!pars.names().contains(names)) {
             LoggerFactory.getLogger(getClass()).error("Wrong input FitState. Must be loss spectrum fit.");
@@ -79,7 +76,7 @@ public class ShowLossSpectrumAction extends OneToOneAction<FitState, FitState> {
 
         UnivariateFunction scatterFunction;
         boolean calculateRatio = false;
-        XYPlotFrame frame = (XYPlotFrame) PlotsPlugin.buildFrom(getContext())
+        XYPlotFrame frame = (XYPlotFrame) PlotsPlugin.buildFrom(context)
                 .buildPlotFrame(getName(), name + ".loss",
                         new MetaBuilder("plot")
                         .setValue("plotTitle", "Differential scattering crossection for " + name)
@@ -104,15 +101,15 @@ public class ShowLossSpectrumAction extends OneToOneAction<FitState, FitState> {
         double ionRatio = -1;
         double ionRatioError = -1;
         if (calculateRatio) {
-            threshold = reader.getDouble("ionThreshold", 17);
+            threshold = meta.getDouble("ionThreshold", 17);
             ionRatio = calcultateIonRatio(pars, threshold);
             log.log("The ionization ratio (using threshold {}) is {}", threshold, ionRatio);
-            ionRatioError = calultateIonRatioError(name, input, threshold);
+            ionRatioError = calultateIonRatioError(context, name, input, threshold);
             log.log("the ionization ration standard deviation (using threshold {}) is {}", threshold, ionRatioError);
         }
 
-        if (reader.getBoolean("printResult", false)) {
+        if (meta.getBoolean("printResult", false)) {
-            PrintWriter writer = new PrintWriter(new OutputStreamWriter(buildActionOutput(name), Charset.forName("UTF-8")));
+            PrintWriter writer = new PrintWriter(new OutputStreamWriter(buildActionOutput(context, name), Charset.forName("UTF-8")));
 //            writer.println("*** FIT PARAMETERS ***");
             input.print(writer);
 //            for (Param param : pars.getSubSet(names).getParams()) {
@@ -168,7 +165,7 @@ public class ShowLossSpectrumAction extends OneToOneAction<FitState, FitState> {
             writer.println();
             PrintFunction.printFunctionSimple(writer, scatterFunction, 0, 100, 500);
 
-            if (meta().getBoolean("showSpread", false)) {
+            if (meta.getBoolean("showSpread", false)) {
                 writer.println("***SPECTRUM SPREAD***");
                 writer.println();
 
@@ -208,14 +205,14 @@ public class ShowLossSpectrumAction extends OneToOneAction<FitState, FitState> {
         return exProb / ionProb;
     }
 
-    public double calultateIonRatioError(String dataNeme, FitState state, double threshold) {
+    public double calultateIonRatioError(Context context, String dataNeme, FitState state, double threshold) {
         ParamSet parameters = state.getParameters().getSubSet(new String[]{"exPos", "ionPos", "exW", "ionW", "exIonRatio"});
         NamedMatrix covariance = state.getCovariance();
-        return calultateIonRatioError(dataNeme, parameters, covariance, threshold);
+        return calultateIonRatioError(context, dataNeme, parameters, covariance, threshold);
     }
 
     @SuppressWarnings("Unchecked")
-    public double calultateIonRatioError(String name, NamedDoubleSet parameters, NamedMatrix covariance, double threshold) {
+    public double calultateIonRatioError(Context context, String name, NamedDoubleSet parameters, NamedMatrix covariance, double threshold) {
         int number = 10000;
 
         double[] res = new GaussianParameterGenerator(parameters, covariance)
@@ -227,7 +224,7 @@ public class ShowLossSpectrumAction extends OneToOneAction<FitState, FitState> {
 
         Histogram hist = new Histogram(0.3, 0.5, 0.002);
         hist.fill(res);
-        XYPlotFrame frame = (XYPlotFrame) PlotsPlugin.buildFrom(getContext())
+        XYPlotFrame frame = (XYPlotFrame) PlotsPlugin.buildFrom(context)
                 .buildPlotFrame(getName(), name + ".ionRatio",
                         new MetaBuilder("plot").setValue("plotTitle", "Ion ratio Distribution for " + name)
                 );

numass-main/src/main/java/inr/numass/actions/ShowSpectrumAction.java

@@ -21,6 +21,7 @@ import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.ColumnedDataWriter;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import hep.dataforge.plots.fx.FXPlotUtils;
 import hep.dataforge.plots.jfreechart.JFreeChartFrame;
@@ -45,28 +46,24 @@ import org.jfree.ui.RectangleEdge;
 @TypedActionDef(name = "showSpectrum", inputType = NMFile.class, outputType = NMFile.class)
 public class ShowSpectrumAction extends OneToOneAction<NMFile, NMFile> {
 
-    public ShowSpectrumAction(Context context, Meta an) {
-        super(context, an);
-    }
-
     @Override
-    protected NMFile execute(Logable log, String name, Meta reader, NMFile source) throws ContentException {
+    protected NMFile execute(Context context, Logable log, String name, Laminate meta, NMFile source) throws ContentException {
         log.log("File {} started", source.getName());
 
         List<NMPoint> printPoints = new ArrayList<>();
         List<NMPoint> showPoints = new ArrayList<>();
 
         for (NMPoint point : source.getNMPoints()) {
-            if (toPrint(point)) {
+            if (toPrint(point, meta)) {
                 printPoints.add(point);
             }
-            if (toShow(point)) {
+            if (toShow(point, meta)) {
                 showPoints.add(point);
             }
         }
 
-        int chanelsPerBin = meta().getInt("binning", 1); // биннинг
+        int chanelsPerBin = meta.getInt("binning", 1); // биннинг
-        boolean normalize = meta().getBoolean("normalize", false); // нормировка на время набора точки
+        boolean normalize = meta.getBoolean("normalize", false); // нормировка на время набора точки
 
         if (showPoints.size() > 0) {
             showSpectra(showPoints, source.getName(), chanelsPerBin, normalize);
@@ -75,7 +72,7 @@ public class ShowSpectrumAction extends OneToOneAction<NMFile, NMFile> {
         if (printPoints.size() > 0) {
             ESpectrum data = new ESpectrum(printPoints, chanelsPerBin, normalize);
 
-            OutputStream stream = buildActionOutput(name);
+            OutputStream stream = buildActionOutput(context, name);
 
             ColumnedDataWriter.writeDataSet(stream, data, source.getName());
 
@@ -85,11 +82,9 @@ public class ShowSpectrumAction extends OneToOneAction<NMFile, NMFile> {
         return source;
     }
 
-    private boolean toPrint(NMPoint point) throws ContentException {
+    private boolean toPrint(NMPoint point, Meta meta) throws ContentException {
-        Meta root = this.meta();
+        if (meta.hasNode("print")) {
-
+            List<? extends Meta> cfg = meta.getNodes("print");
-        if (root.hasNode("print")) {
-            List<? extends Meta> cfg = meta().getNodes("print");
             boolean res = false;
             for (Meta e : cfg) {
                 double from = e.getDouble("from", 0);
@@ -98,15 +93,13 @@ public class ShowSpectrumAction extends OneToOneAction<NMFile, NMFile> {
             }
             return res;
         } else {
-            return root.getBoolean("print", false);
+            return meta.getBoolean("print", false);
         }
     }
 
-    private boolean toShow(NMPoint point) throws ContentException {
+    private boolean toShow(NMPoint point, Meta meta) throws ContentException {
-        Meta root = this.meta();
+        if (meta.hasNode("show")) {
-
+            List<? extends Meta> cfg = meta.getNodes("show");
-        if (root.hasNode("show")) {
-            List<? extends Meta> cfg = meta().getNodes("show");
             boolean res = false;
             for (Meta e : cfg) {
                 double from = e.getDouble("from", 0);
@@ -115,7 +108,7 @@ public class ShowSpectrumAction extends OneToOneAction<NMFile, NMFile> {
             }
             return res;
         } else {
-            return root.getBoolean("show", false);
+            return meta.getBoolean("show", false);
         }
     }
 

numass-main/src/main/java/inr/numass/actions/SlicingAction.java

@@ -21,6 +21,7 @@ import hep.dataforge.description.TypedActionDef;
 import hep.dataforge.exceptions.ContentException;
 import hep.dataforge.io.ColumnedDataWriter;
 import hep.dataforge.io.log.Logable;
+import hep.dataforge.meta.Laminate;
 import hep.dataforge.meta.Meta;
 import inr.numass.data.NMFile;
 import inr.numass.data.RawNMPoint;
@@ -39,22 +40,18 @@ public class SlicingAction extends OneToOneAction<NMFile, NMFile> {
 
     public static final String name = "slicing";
 
-    public SlicingAction(Context context, Meta an) {
-        super(context, an);
-    }
-
     @Override
     public String getName() {
         return name;
     }
 
     @Override
-    protected NMFile execute(Logable log, String name, Meta reader, NMFile source) throws ContentException {
+    protected NMFile execute(Context context, Logable log, String name, Laminate meta, NMFile source) throws ContentException {
         boolean normalize;
         Map<String, Pair<Integer, Integer>> slicingConfig;
 
         LinkedHashMap<String, Pair<Integer, Integer>> res = new LinkedHashMap<>();
-        List<? extends Meta> list = meta().getNode("sliceconfig").getNodes("slicepoint");
+        List<? extends Meta> list = meta.getNode("sliceconfig").getNodes("slicepoint");
 
         for (Meta slice : list) {
             String title = slice.getString("title", slice.getName());
@@ -64,7 +61,7 @@ public class SlicingAction extends OneToOneAction<NMFile, NMFile> {
         }
         slicingConfig = res;
 
-        normalize = meta().getBoolean("normalize", false);
+        normalize = meta.getBoolean("normalize", false);
 
         if (slicingConfig == null) {
             throw new RuntimeException("Slice configuration not defined");
@@ -73,7 +70,7 @@ public class SlicingAction extends OneToOneAction<NMFile, NMFile> {
 
         SlicedData sData = new SlicedData(source, slicingConfig, normalize);
 
-        OutputStream stream = buildActionOutput(name);
+        OutputStream stream = buildActionOutput(context, name);
 
         ColumnedDataWriter.writeDataSet(stream, sData, null);
 

numass-main/src/main/java/inr/numass/actions/SummaryAction.java

@@ -18,7 +18,6 @@ package inr.numass.actions;
 import hep.dataforge.actions.ManyToOneAction;
 import hep.dataforge.actions.GroupBuilder;
 import hep.dataforge.context.Context;
-import hep.dataforge.data.Data;
 import hep.dataforge.data.DataNode;
 import hep.dataforge.points.Format;
 import hep.dataforge.points.DataPoint;
@@ -34,8 +33,7 @@ import java.io.OutputStream;
 import java.util.Arrays;
 import java.util.List;
 import hep.dataforge.points.PointSet;
-import java.util.function.Consumer;
+import java.util.Map;
-import javafx.util.Pair;
 
 /**
  *
@@ -46,17 +44,13 @@ public class SummaryAction extends ManyToOneAction<FitState, PointSet> {
 
     public static final String SUMMARY_NAME = "sumName";
 
-    public SummaryAction(Context context, Meta annotation) {
-        super(context, annotation);
-    }
-
     @Override
     @SuppressWarnings("unchecked")
-    protected List<DataNode<PointSet>> buildGroups(DataNode input) {
+    protected List<DataNode<PointSet>> buildGroups(Context context, DataNode input, Meta actionMeta) {
-        Meta meta = inputMeta(input.meta());
+        Meta meta = inputMeta(context, input.meta(), actionMeta);
         List<DataNode<PointSet>> groups;
         if (meta.hasValue("grouping.byValue")) {
-            groups = super.buildGroups(input);
+            groups = super.buildGroups(context, input, actionMeta);
         } else {
             groups = GroupBuilder.byValue(SUMMARY_NAME, meta.getString(SUMMARY_NAME, "summary")).group(input);
         }
@@ -64,8 +58,8 @@ public class SummaryAction extends ManyToOneAction<FitState, PointSet> {
     }
 
     @Override
-    protected PointSet execute(Logable log, DataNode<FitState> input) {
+    protected PointSet execute(Context context, Logable log, String nodeName, Map<String, FitState> input, Meta meta) {
-        String[] parNames = meta().getStringArray("parnames");
+        String[] parNames = meta.getStringArray("parnames");
         String[] names = new String[2 * parNames.length + 2];
         names[0] = "file";
         for (int i = 0; i < parNames.length; i++) {
@@ -81,25 +75,22 @@ public class SummaryAction extends ManyToOneAction<FitState, PointSet> {
         double[] av = new double[parNames.length];
         Arrays.fill(av, 0);
 
-        input.stream().forEach(new Consumer<Pair<String, Data<? extends FitState>>>() {
+        input.forEach((String key, FitState value) -> {
-            @Override
+            FitState state = value;
-            public void accept(Pair<String, Data<? extends FitState>> item) {
+            Value[] values = new Value[names.length];
-                FitState state = item.getValue().get();
+            values[0] = Value.of(key);
-                Value[] values = new Value[names.length];
+            for (int i = 0; i < parNames.length; i++) {
-                values[0] = Value.of(item.getKey());
+                Value val = Value.of(state.getParameters().getValue(parNames[i]));
-                for (int i = 0; i < parNames.length; i++) {
+                values[2 * i + 1] = val;
-                    Value val = Value.of(state.getParameters().getValue(parNames[i]));
+                Value err = Value.of(state.getParameters().getError(parNames[i]));
-                    values[2 * i + 1] = val;
+                values[2 * i + 2] = err;
-                    Value err = Value.of(state.getParameters().getError(parNames[i]));
+                double weight = 1 / err.doubleValue() / err.doubleValue();
-                    values[2 * i + 2] = err;
+                av[i] += val.doubleValue() * weight;
-                    double weight = 1 / err.doubleValue() / err.doubleValue();
+                weights[i] += weight;
-                    av[i] += val.doubleValue() * weight;
-                    weights[i] += weight;
-                }
-                values[values.length - 1] = Value.of(state.getChi2());
-                DataPoint point = new MapPoint(names, values);
-                res.add(point);
             }
+            values[values.length - 1] = Value.of(state.getChi2());
+            DataPoint point = new MapPoint(names, values);
+            res.add(point);
         });
 
         Value[] averageValues = new Value[names.length];
@@ -117,11 +108,11 @@ public class SummaryAction extends ManyToOneAction<FitState, PointSet> {
     }
 
     @Override
-    protected void afterGroup(Logable log, String groupName, Meta outputMeta, PointSet output) {
+    protected void afterGroup(Context context, Logable log, String groupName, Meta outputMeta, PointSet output) {
-        OutputStream stream = buildActionOutput(groupName);
+        OutputStream stream = buildActionOutput(context, groupName);
         ColumnedDataWriter.writeDataSet(stream, output, groupName);
 
-        super.afterGroup(log, groupName, outputMeta, output);
+        super.afterGroup(context, log, groupName, outputMeta, output);
     }
 
 }

numass-main/src/main/java/inr/numass/models/ResolutionFunction.java

@@ -104,7 +104,11 @@ public class ResolutionFunction implements BivariateFunction {
         return (double x, double y) -> f.value(x - y);
     }
 
-    public static BivariateFunction getConstantTail(){
+    public static BivariateFunction getAngledTail(double dropPerKv) {
+        return (double E, double U) -> 1 - (E - U) * dropPerKv/1000d;
+    }
+
+    public static BivariateFunction getConstantTail() {
         return new ConstantTailFunction();
     }
 

numass-main/src/main/java/inr/numass/models/TransmissionInterpolator.java

@@ -15,7 +15,7 @@
  */
 package inr.numass.models;
 
-import hep.dataforge.actions.RunManager;
+import hep.dataforge.actions.ActionUtils;
 import hep.dataforge.context.Context;
 import hep.dataforge.data.DataNode;
 import hep.dataforge.io.ColumnedDataReader;
@@ -48,7 +48,7 @@ public class TransmissionInterpolator implements UnivariateFunction {
     @SuppressWarnings("unchecked")
     public static TransmissionInterpolator fromAction(Context context, Meta actionAnnotation, 
             String xName, String yName, int nSmooth, double w, double border) throws InterruptedException {
-        DataNode<PointSet> node = RunManager.executeAction(context, actionAnnotation);
+        DataNode<PointSet> node = ActionUtils.runConfig(context, actionAnnotation);
         PointSet data = node.getData().get();
         return new TransmissionInterpolator(data, xName, yName, nSmooth, w, border);
     }

numass-main/src/main/java/inr/numass/workbench/NumassWorkbenchController.java

@@ -10,7 +10,7 @@ import de.jensd.shichimifx.utils.ConsoleDude;
 import hep.dataforge.actions.Action;
 import hep.dataforge.actions.ActionManager;
 import hep.dataforge.actions.ActionStateListener;
-import hep.dataforge.actions.RunManager;
+import hep.dataforge.actions.ActionUtils;
 import hep.dataforge.context.Context;
 import hep.dataforge.context.GlobalContext;
 import hep.dataforge.data.DataNode;
@@ -147,7 +147,7 @@ public class NumassWorkbenchController implements Initializable, StagePaneHolder
      * @return
      */
     @Override
-    public StagePane getStagePane(String stage) {
+    public synchronized StagePane getStagePane(String stage) {
         if (!stages.containsKey(stage)) {
             Tab stageTab = new Tab(stage);
             StagePane stageTabPane = new StagePane();
@@ -171,9 +171,9 @@ public class NumassWorkbenchController implements Initializable, StagePaneHolder
     private void buildContextPane() {
         Configuration contextValues = new Configuration("context");
         //TODO add asMeta method to Context and replace map here
-        for (Map.Entry<String, Value> item : context.getProperties().entrySet()) {
+        context.getProperties().entrySet().stream().forEach((item) -> {
             contextValues.setValue(item.getKey(), item.getValue());
-        }
+        });
 
         contextValues.addObserver(new ConfigChangeListener() {
             @Override
@@ -310,9 +310,7 @@ public class NumassWorkbenchController implements Initializable, StagePaneHolder
                 //FIXME evaluate error here
                 throw new Error("Empty data");
             }
-            Action action = RunManager.readAction(getContext(), getActionConfiguration());
+            ActionUtils.runAction(getContext(), data, getActionConfiguration()).compute();
-//            action.addListener(this);
-            action.run(data).compute();
             Platform.runLater(() -> statusBar.setText("Execution complete"));
         }, "actions").start();
     }

numass-main/src/main/java/inr/numass/workbench/StagePane.java

@@ -28,18 +28,20 @@ public class StagePane extends TabPane implements Named {
     }
 
     public void closeAll() {
-        for (OutputTab tab : tabs.values()) {
+        tabs.values().stream().map((tab) -> {
             tab.close();
+            return tab;
+        }).forEach((tab) -> {
             Platform.runLater(() -> getTabs().remove(tab));
-        }
+        });
     }
 
-    public void closeTab(String name) {
+    public synchronized void closeTab(String name) {
         tabs.get(name).close();
         Platform.runLater(() -> getTabs().remove(tabs.get(name)));
     }
 
-    public TextOutputTab buildTextOutput(String name) {
+    public synchronized TextOutputTab buildTextOutput(String name) {
         if (tabs.containsKey(name)) {
             closeTab(name);
         }
@@ -49,7 +51,7 @@ public class StagePane extends TabPane implements Named {
         return out;
     }
 
-    public PlotFrame buildPlotOutput(String name, Meta meta) {
+    public synchronized PlotFrame buildPlotOutput(String name, Meta meta) {
         if (tabs.containsKey(name)) {
             closeTab(name);
         }

numass-main/src/main/java/inr/numass/workbench/TextOutputTab.java

@@ -5,17 +5,18 @@
  */
 package inr.numass.workbench;
 
-import hep.dataforge.fx.DataOutputPane;
+import hep.dataforge.fx.FXDataOutputPane;
 import java.io.OutputStream;
 import javafx.event.Event;
 
 /**
  * A text output tab. Basically it is attached to IOManager::out
+ *
  * @author Alexander Nozik <altavir@gmail.com>
  */
 public class TextOutputTab extends OutputTab {
 
-    private final DataOutputPane out;
+    private final FXDataOutputPane out;
 
     /**
      * Create new stream output tab
@@ -26,7 +27,8 @@ public class TextOutputTab extends OutputTab {
      */
     public TextOutputTab(String name) {
         super(name);
-        out = new DataOutputPane();
+//        out = new DataOutputPane();
+        out = new FXDataOutputPane();
         setContent(out);
         setOnClosed((Event event) -> close());
     }