Minor fixes. Trying to use data factories instead of uri
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@ -14,25 +14,41 @@ import inr.numass.storage.NumassDataUtils
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import inr.numass.storage.NumassStorage
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import inr.numass.utils.UnderflowCorrection
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//File dataDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_1\\set_28")
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//File dataDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_2_wide\\set_31")
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File rootDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_2_wide")
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File rootDir = new File("D:\\Work\\Numass\\data\\2016_10\\Fill_1")
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NumassStorage storage = NumassStorage.buildLocalNumassRoot(rootDir, true);
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Collection<NMPoint> data = NumassDataUtils.joinSpectra(
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StorageUtils.loaderStream(storage).map { it.value }.filter { it.name.matches("set_.{2,3}") }
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StorageUtils.loaderStream(storage).filter { it.key.matches("set_.{2,3}") }.map {
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println "loading ${it.key}"
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it.value
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}
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)
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data = NumassDataUtils.substractReferencePoint(data, 18600d);
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//if(!dataDir.exists()){
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// println "dataDir directory does not exist"
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//}
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//NumassData data = NumassDataLoader.fromLocalDir(null, dataDir)
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////NumassData data = NMFile.readFile(new File("D:\\Work\\Numass\\sterilie2013-2014\\dat\\2013\\SCAN06.DAT" ))
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//println "Empty files:"
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//Collection<NMPoint> emptySpectra = NumassDataUtils.joinSpectra(
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// StorageUtils.loaderStream(storage).filter{ it.key.matches("Empty.*")}.map {
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// println it.key
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// it.value
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// }
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//)
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Table t = new UnderflowCorrection().fitAllPoints(data, 400, 650, 3100, 20);
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//emptySpectra = NumassDataUtils.substractReferencePoint(emptySpectra,18600);
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//
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//data = data.collect { point ->
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// NMPoint ref = emptySpectra.find { it.uset == point.uset }
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// if (ref) {
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// println "substracting tritium background for point ${point.uset}"
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// NumassDataUtils.substractPoint(point, ref)
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// } else {
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// println "point ${point.uset} skipped"
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// point
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// }
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//}
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Table t = new UnderflowCorrection().fitAllPoints(data, 400, 750, 3100, 20);
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ColumnedDataWriter.writeDataSet(System.out, t, "underflow parameters")
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@ -58,7 +58,7 @@ public class NumassFitScanSummaryTask extends AbstractTask<Table> {
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@Override
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protected Table execute(Context context, String nodeName, Map<String, FitState> input, Laminate meta) {
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ListTable.Builder builder = new ListTable.Builder("msterile2", "U2", "U2err", "U2limit", "E0", "trap");
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ListTable.Builder builder = new ListTable.Builder("m", "U2", "U2err", "U2limit", "E0", "trap");
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input.forEach((key, fitRes) -> {
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ParamSet pars = fitRes.getParameters();
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@ -71,14 +71,15 @@ public class NumassFitScanSummaryTask extends AbstractTask<Table> {
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limit = Double.NaN;
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}
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builder.row(pars.getValue("msterile2"),
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builder.row(
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Math.sqrt(pars.getValue("msterile2").doubleValue()),
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pars.getValue("U2"),
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pars.getError("U2"),
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limit,
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pars.getValue("E0"),
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pars.getValue("trap"));
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});
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Table res = TableTransform.sort(builder.build(), "msterile2", true);
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Table res = TableTransform.sort(builder.build(), "m", true);
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try (OutputStream stream = buildActionOutput(context, nodeName)) {
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@ -360,7 +360,7 @@ public class NumassWorkbenchController implements Initializable, StagePaneHolder
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statusBar.setProgress(-1);
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});
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DataNode data = new FileDataFactory().build(getContext(), getDataConfiguration());
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DataNode data = new FileDataFactory().load(getContext(), getDataConfiguration());
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try {
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ActionUtils.runAction(getContext(), data, getActionConfiguration()).computeAll();
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Platform.runLater(() -> statusBar.setText("Execution complete"));
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