Plots refactoring

numass-main/build.gradle

@@ -8,16 +8,16 @@ mainClassName = mainClass
 description = """The main head of all numass projects"""
 
 dependencies {
-    compile group: 'commons-cli', name: 'commons-cli', version:'1.+'
+    compile group: 'commons-cli', name: 'commons-cli', version: '1.+'
-    compile group: 'commons-io', name: 'commons-io', version:'2.+'
+    compile group: 'commons-io', name: 'commons-io', version: '2.+'
     compile project(':dataforge-stat:dataforge-minuit')
     compile project(':dataforge-fx')
-    compile project(':dataforge-plots')
+    compile project(':dataforge-plots:plots-jfc')
     compile project(':numass-storage')
     compile project(':dataforge-grind')
 }
 
-task workbench(dependsOn: classes, type: JavaExec){
+task workbench(dependsOn: classes, type: JavaExec) {
     main 'inr.numass.workbench.Workbench'
     classpath = sourceSets.main.runtimeClasspath
     description "start visual numass workbench"

numass-main/src/main/groovy/inr/numass/LaunchGrindShell.groovy

@@ -8,7 +8,11 @@ import hep.dataforge.workspace.Workspace
  * Created by darksnake on 29-Aug-16.
  */
 
-GrindShell shell = new GrindShell()
+new GrindShell().start {
-Workspace numass = new GrindLauncher().withSpec(NumassWorkspaceSpec).from(new File("D:\\Work\\Numass\\sterile2016\\workspace.groovy")).buildWorkspace()
+    Workspace numass = new GrindLauncher()
-shell.bind("numass", numass)
+            .withSpec(NumassWorkspaceSpec)
-shell.start()
+            .from(new File("D:\\Work\\Numass\\sterile2016\\workspace.groovy"))
+            .buildWorkspace()
+    setContext(numass.getContext())
+    bind("numass", numass)
+}

numass-main/src/main/java/inr/numass/NumassPlugin.java

@@ -23,6 +23,9 @@ import hep.dataforge.maths.MathPlugin;
 import hep.dataforge.meta.Meta;
 import hep.dataforge.plotfit.PlotFitResultAction;
 import hep.dataforge.plots.PlotDataAction;
+import hep.dataforge.plots.fx.FXPlotUtils;
+import hep.dataforge.plots.fx.PlotContainer;
+import hep.dataforge.plots.jfreechart.JFreeChartFrame;
 import hep.dataforge.stat.fit.FitManager;
 import hep.dataforge.stat.fit.FitPlugin;
 import hep.dataforge.stat.models.ModelManager;
@@ -41,10 +44,31 @@ import org.apache.commons.math3.util.FastMath;
  * @author Alexander Nozik
  */
 @PluginDef(group = "inr.numass", name = "numass",
-        dependsOn = {"hep.dataforge:actions", "hep.dataforge:math", "hep.dataforge:MINUIT", "hep.dataforge:plots"},
+        dependsOn = {"hep.dataforge:actions", "hep.dataforge:math", "hep.dataforge:MINUIT", "hep.dataforge:plots-jfc"},
         description = "Numass data analysis tools")
 public class NumassPlugin extends BasicPlugin {
 
+    /**
+     * Display a JFreeChart plot frame in a separate stage window
+     *
+     * @param title
+     * @param width
+     * @param height
+     * @return
+     */
+    public static JFreeChartFrame displayJFreeChart(String title, double width, double height, Meta meta) {
+        PlotContainer container = FXPlotUtils.displayContainer(title, width, height);
+        JFreeChartFrame frame = new JFreeChartFrame(meta);
+        frame.configureValue("title", title);
+        container.setPlot(frame);
+        return frame;
+    }
+
+    public static JFreeChartFrame displayJFreeChart(String title, Meta meta) {
+        return displayJFreeChart(title, 800, 600, meta);
+    }
+
+
     @Override
     public void attach(Context context) {
 //        StorageManager.buildFrom(context);

numass-main/src/main/java/inr/numass/workbench/NumassWorkbenchController.java

@@ -30,9 +30,22 @@ import hep.dataforge.meta.MetaBuilder;
 import hep.dataforge.plots.PlotFrame;
 import hep.dataforge.plots.PlotHolder;
 import hep.dataforge.plots.PlotsPlugin;
+import hep.dataforge.utils.ContextMetaFactory;
 import hep.dataforge.values.Value;
 import inr.numass.NumassIO;
 import inr.numass.NumassProperties;
+import javafx.application.Platform;
+import javafx.beans.property.BooleanProperty;
+import javafx.beans.property.SimpleBooleanProperty;
+import javafx.beans.value.ObservableValue;
+import javafx.event.ActionEvent;
+import javafx.fxml.FXML;
+import javafx.fxml.Initializable;
+import javafx.scene.Node;
+import javafx.scene.control.*;
+import javafx.stage.FileChooser;
+import org.controlsfx.control.StatusBar;
+
 import java.io.File;
 import java.io.IOException;
 import java.net.URL;
@@ -43,23 +56,6 @@ import java.util.Map;
 import java.util.ResourceBundle;
 import java.util.concurrent.ConcurrentHashMap;
 import java.util.stream.Collectors;
-import javafx.application.Platform;
-import javafx.beans.property.BooleanProperty;
-import javafx.beans.property.SimpleBooleanProperty;
-import javafx.beans.value.ObservableValue;
-import javafx.event.ActionEvent;
-import javafx.fxml.FXML;
-import javafx.fxml.Initializable;
-import javafx.scene.Node;
-import javafx.scene.control.Accordion;
-import javafx.scene.control.Alert;
-import javafx.scene.control.Tab;
-import javafx.scene.control.TabPane;
-import javafx.scene.control.TitledPane;
-import javafx.scene.control.ToggleButton;
-import javafx.stage.FileChooser;
-import org.controlsfx.control.StatusBar;
-import hep.dataforge.utils.ContextMetaFactory;
 
 /**
  * FXML Controller class
@@ -165,7 +161,7 @@ public class NumassWorkbenchController implements Initializable, StagePaneHolder
         this.context = this.contextFactory.build(parentContext, config);
 
         // attachig visual process manager
-        processWindow.setManager(context.workManager());
+        processWindow.setManager(context.taskManager());
 
         // setting io manager
         context.setIO(new WorkbenchIOManager(new NumassIO(), this));
@@ -340,7 +336,7 @@ public class NumassWorkbenchController implements Initializable, StagePaneHolder
                 runActions();
             }
         } else {
-            this.context.workManager().shutdown();
+            this.context.taskManager().shutdown();
         }
     }
 

numass-main/src/main/java/inr/numass/workbench/Workbench.java

@@ -7,8 +7,6 @@ package inr.numass.workbench;
 
 import hep.dataforge.context.GlobalContext;
 import inr.numass.Numass;
-import java.io.IOException;
-import java.text.ParseException;
 import javafx.application.Application;
 import javafx.fxml.FXMLLoader;
 import javafx.scene.Parent;
@@ -16,12 +14,22 @@ import javafx.scene.Scene;
 import javafx.stage.Stage;
 import javafx.stage.WindowEvent;
 
+import java.io.IOException;
+import java.text.ParseException;
+
 /**
  *
  * @author Alexander Nozik
  */
 public class Workbench extends Application {
 
+    /**
+     * @param args the command line arguments
+     */
+    public static void main(String[] args) {
+        launch(args);
+    }
+
     @Override
     public void start(Stage primaryStage) throws IOException, ParseException {
         FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/NumassWorkbench.fxml"));
@@ -38,7 +46,7 @@ public class Workbench extends Application {
 
         scene.getWindow().setOnCloseRequest((WindowEvent event) -> {
             try {
-                controller.getContext().workManager().getRoot().cancel(true);
+                controller.getContext().taskManager().getRoot().cancel(true);
             } catch (Exception e) {
 
             }
@@ -51,11 +59,4 @@ public class Workbench extends Application {
         super.stop();
     }
 
-    /**
-     * @param args the command line arguments
-     */
-    public static void main(String[] args) {
-        launch(args);
-    }
-
 }

numass-main/src/test/java/inr/numass/models/PlotScatter.java

@@ -16,7 +16,7 @@
 package inr.numass.models;
 
 import hep.dataforge.stat.fit.ParamSet;
-import hep.dataforge.plots.fx.FXPlotUtils;
+import inr.numass.NumassPlugin;
 
 /**
  *
@@ -36,6 +36,6 @@ public class PlotScatter {
                 + "'ionW'	= 11.33 ± 0.43\n"
                 + "'exIonRatio'	= 4.83 ± 0.36"
         );
-        LossCalculator.plotScatter(FXPlotUtils.displayJFreeChart("Loss function", null),pars);
+        LossCalculator.plotScatter(NumassPlugin.displayJFreeChart("Loss function", null), pars);
     }
 }

numass-main/src/test/java/inr/numass/models/TestNeLossParametrisation.java

@@ -18,7 +18,7 @@ package inr.numass.models;
 import hep.dataforge.maths.integration.GaussRuleIntegrator;
 import hep.dataforge.plots.PlotFrame;
 import hep.dataforge.plots.data.PlottableXYFunction;
-import hep.dataforge.plots.fx.FXPlotUtils;
+import inr.numass.NumassPlugin;
 import org.apache.commons.math3.analysis.UnivariateFunction;
 
 /**
@@ -31,7 +31,7 @@ public class TestNeLossParametrisation {
      * @param args the command line arguments
      */
     public static void main(String[] args) {
-        PlotFrame frame = FXPlotUtils.displayJFreeChart("Loss parametrisation test", null);
+        PlotFrame frame = NumassPlugin.displayJFreeChart("Loss parametrisation test", null);
     //JFreeChartFrame.drawFrame("Loss parametrisation test", null);
         UnivariateFunction oldFunction = LossCalculator.getSingleScatterFunction();
         UnivariateFunction newFunction = getSingleScatterFunction(12.86, 16.78, 1.65, 12.38, 4.79);

numass-main/src/test/java/inr/numass/models/TransmissionInterpolatorTest.java

@@ -18,8 +18,8 @@ package inr.numass.models;
 import hep.dataforge.context.GlobalContext;
 import hep.dataforge.plots.data.PlottableData;
 import hep.dataforge.plots.data.PlottableXYFunction;
-import hep.dataforge.plots.fx.FXPlotUtils;
 import hep.dataforge.plots.jfreechart.JFreeChartFrame;
+import inr.numass.NumassPlugin;
 
 /**
  *
@@ -28,7 +28,7 @@ import hep.dataforge.plots.jfreechart.JFreeChartFrame;
 public class TransmissionInterpolatorTest {
 
     public static void main(String[] args) {
-        JFreeChartFrame frame = FXPlotUtils.displayJFreeChart("TransmissionInterpolatorTest", null);
+        JFreeChartFrame frame = NumassPlugin.displayJFreeChart("TransmissionInterpolatorTest", null);
 //JFreeChartFrame.drawFrame("TransmissionInterpolatorTest", null);
         TransmissionInterpolator interpolator = TransmissionInterpolator.fromFile(GlobalContext.instance(),
                 "d:\\sterile-new\\loss2014-11\\.dataforge\\merge\\empty_sum.onComplete", "Uset", "CR", 15, 0.8, 19002d);

numass-viewer/src/main/java/inr/numass/viewer/MainViewerController.java

@@ -129,7 +129,7 @@ public class MainViewerController implements Initializable {
     }
 
     private void loadDirectory(String path) {
-        getContext().workManager().submit("viewer.loadDirectory", (ProgressCallback callback) -> {
+        getContext().taskManager().submit("viewer.loadDirectory", (ProgressCallback callback) -> {
             callback.updateTitle("Load storage (" + path + ")");
             callback.setProgress(-1);
             callback.updateMessage("Building numass storage tree...");
@@ -151,8 +151,8 @@ public class MainViewerController implements Initializable {
 
     public void setRootStorage(NumassStorage root) {
 
-        getContext().workManager().cleanup();
+        getContext().taskManager().cleanup();
-        getContext().workManager().submit("viewer.storage.load", (ProgressCallback callback) -> {
+        getContext().taskManager().submit("viewer.storage.load", (ProgressCallback callback) -> {
             callback.updateTitle("Fill data to UI (" + root.getName() + ")");
             callback.setProgress(-1);
             Platform.runLater(() -> statusBar.setProgress(-1));

numass-viewer/src/main/java/inr/numass/viewer/MspViewController.java

@@ -87,7 +87,7 @@ public class MspViewController {
 
     public void fillMspData(Storage rootStorage) {
         if (rootStorage != null) {
-            context.workManager().submit("viewer.msp.fill", (ProgressCallback callback) -> {
+            context.taskManager().submit("viewer.msp.fill", (ProgressCallback callback) -> {
                 try {
 //                    callback.updateTitle("Fill msp data (" + rootStorage.getName() + ")");
 

numass-viewer/src/main/java/inr/numass/viewer/NumassLoaderViewComponent.java

@@ -214,7 +214,7 @@ public class NumassLoaderViewComponent extends AnchorPane implements Initializab
     public void loadData(NumassData data) {
         this.data = data;
         if (data != null) {
-            context.workManager().<List<NMPoint>>submit("viewer.numass.load", (ProgressCallback callback) -> {
+            context.taskManager().<List<NMPoint>>submit("viewer.numass.load", (ProgressCallback callback) -> {
                 callback.updateTitle("Load numass data (" + data.getName() + ")");
                 points = data.getNMPoints();
 
@@ -239,7 +239,7 @@ public class NumassLoaderViewComponent extends AnchorPane implements Initializab
     }
 
     private void setupHVPane(Supplier<Table> hvData) {
-        context.workManager().submit("viewer.numass.hv", (ProgressCallback callback) -> {
+        context.taskManager().submit("viewer.numass.hv", (ProgressCallback callback) -> {
             Table t = hvData.get();
             Platform.runLater(() -> {
                 if (t != null) {
@@ -343,7 +343,7 @@ public class NumassLoaderViewComponent extends AnchorPane implements Initializab
             detectorPlot.removePlot();
         }
 
-        context.workManager().submit("viewer.numass.load.detector", (ProgressCallback callback) -> {
+        context.taskManager().submit("viewer.numass.load.detector", (ProgressCallback callback) -> {
             Meta plottableConfig = new MetaBuilder("plot")
                     .setValue("connectionType", "step")
                     .setValue("thickness", 2)